pycom10g18920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016642
Physical Location & Seq
Forward (+)
22155593 .. 22155980
388 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18920.2

Sequence Viewer

Length: 282 bp
ATGCCGATAACTTCAACGATGGTCGGAGCCCTATTGGGTTTGGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCTTACATGCGCCATCCTTGGGAGCACGTTCTGGGCATGGGATTAGGCGCAGTTTTTGTTAACCAGCTCGTCAAATGGGACGAACAGCTCAAAGTGGACCTCGATAAGATGCTCGACAAGGCCAAAGCCGCCAACGAACGCCGTTACATTGGTAAACATTTCCGACCCAATTTGACAATTGGTTCATTTCTCAATTTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

9.82

Isoelectric Point (pI)

23.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016642)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20150
fragaria_vesca FvH4_3g13280
malus_domestica MD05G1243500.v1.1 MD10G1225400.v1.1
prunus_persica Prupe.4G120200_v2.0.a1
pyrus_communis pycom10g18920
rosa_chinensis RchiOBHm_Chr5g0021751
rosa_multiflora Rmu_ssc0000233.1_g000007
rosa_roxburghii Rroxscaffold_1G00056970
rosa_samantha Rh5AG157500 Rh5BG157200 Rh5CG171400 Rh5DG157400
rosa_wichuraiana Rw5G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 2 cut(s) 70, 207
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 15
AluBI AGCT 3 cut(s) 76, 145, 166
AluI AGCT 3 cut(s) 76, 145, 166
Alw21I GWGCWC 1 cut(s) 105
AoxI GGCC 1 cut(s) 198
AspLEI GCGC 2 cut(s) 90, 128
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 2 cut(s) 13, 99
BceAI ACGGC 1 cut(s) 204
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 28, 46
BmsI GCATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 47
BshFI GGCC 1 cut(s) 200
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 31, 47, 105
BspACI CCGC 2 cut(s) 70, 207
BspANI GGCC 1 cut(s) 200
BspHI TCATGA 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 28, 46
BspT107I GGYRCC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 74
BstF5I GGATG 1 cut(s) 91
BstHHI GCGC 2 cut(s) 90, 128
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 278
CfoI GCGC 2 cut(s) 90, 128
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 55
CviAII CATG 3 cut(s) 85, 115, 279
CviJI RGCY 6 cut(s) 29, 76, 145, 166, 200, 206
CviKI_1 RGCY 6 cut(s) 29, 76, 145, 166, 200, 206
CviQI GTAC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 3 cut(s) 88, 118, 282
FaiI YATR 3 cut(s) 86, 116, 280
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 84, 114, 278
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 207
GlaI GCGC 2 cut(s) 89, 127
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 200
HhaI GCGC 2 cut(s) 90, 128
Hin1II CATG 3 cut(s) 88, 118, 282
Hin6I GCGC 2 cut(s) 88, 126
HinP1I GCGC 2 cut(s) 88, 126
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HpaI GTTAAC 1 cut(s) 139
Hpy166II GTNNAC 3 cut(s) 139, 175, 233
Hpy188I TCNGA 2 cut(s) 26, 242
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 3 cut(s) 139, 175, 233
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 88, 118, 282
HspAI GCGC 2 cut(s) 88, 126
KspAI GTTAAC 1 cut(s) 139
LmnI GCTCC 3 cut(s) 26, 81, 100
LpnPI CCDG 3 cut(s) 62, 95, 155
LweI GCATC 1 cut(s) 177
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 221
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 3 cut(s) 31, 47, 105
MluCI AATT 3 cut(s) 247, 255, 271
MmeI TCCRAC 3 cut(s) 4, 84, 265
MnlI CCTC 2 cut(s) 77, 188
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 50
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 3 cut(s) 88, 118, 282
NlaIV GGNNCC 2 cut(s) 28, 46
NspI RCATGY 1 cut(s) 88
PagI TCATGA 1 cut(s) 278
PkrI GCNGC 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 28, 46
PspPI GGNCC 1 cut(s) 175
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 3 cut(s) 31, 47, 105
SetI ASST 5 cut(s) 78, 108, 147, 168, 180
SfaNI GCATC 1 cut(s) 177
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 3 cut(s) 247, 255, 271
SsiI CCGC 2 cut(s) 70, 207
StyI CCWWGG 1 cut(s) 95
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 180, 192
TasI AATT 3 cut(s) 247, 255, 271
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.