Rh5BG157200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016642
Physical Location & Seq
Reverse (-)
16032525 .. 16034764
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG157200.1

Sequence Viewer

Length: 246 bp
ATGCCGATAAGCACGACGGCGATCGGAGCCCTATTGGGACTGGGCACCCAGATGTACTCCAACGCCCTCCGCAAGCTCCCTTACATGCGCCATCCATGGGAGCACGTGCTGGGCATGGGTTTGGGTGCACTGTTCGTAAACCAGCTCGTCAAATGGGACGACAAGCTCAAGGAGGACCTTGATAAGATGCTCGACAAGGCCAAGGCCGCCAACGAGCGCCGTTATTTTGATGAAGATGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.28

Weight (kDa)

5.62

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016642)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20150
fragaria_vesca FvH4_3g13280
malus_domestica MD05G1243500.v1.1 MD10G1225400.v1.1
prunus_persica Prupe.4G120200_v2.0.a1
pyrus_communis pycom10g18920
rosa_chinensis RchiOBHm_Chr5g0021751
rosa_multiflora Rmu_ssc0000233.1_g000007
rosa_roxburghii Rroxscaffold_1G00056970
rosa_samantha Rh5AG157500 Rh5BG157200 Rh5CG171400 Rh5DG157400
rosa_wichuraiana Rw5G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 2 cut(s) 70, 207
AcvI CACGTG 1 cut(s) 106
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 97
AluBI AGCT 3 cut(s) 76, 145, 166
AluI AGCT 3 cut(s) 76, 145, 166
Alw21I GWGCWC 2 cut(s) 105, 130
Alw44I GTGCAC 1 cut(s) 126
AoxI GGCC 2 cut(s) 198, 204
ApaLI GTGCAC 1 cut(s) 126
AspLEI GCGC 2 cut(s) 90, 219
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 2 cut(s) 47, 130
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 106
Bbv12I GWGCWC 2 cut(s) 105, 130
BccI CCATC 1 cut(s) 99
BceAI ACGGC 2 cut(s) 33, 204
BfoI RGCGCY 1 cut(s) 220
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 28, 46
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 95, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 95, 201
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 45
BseSI GKGCMC 2 cut(s) 47, 130
BseYI CCCAGC 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 200, 206
BshNI GGYRCC 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 105, 130
BslFI GGGAC 2 cut(s) 51, 170
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 2 cut(s) 51, 170
BsnI GGCC 2 cut(s) 200, 206
Bsp1286I GDGCHC 4 cut(s) 31, 47, 105, 130
Bsp143I GATC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 2 cut(s) 70, 207
BspANI GGCC 2 cut(s) 200, 206
BspLI GGNNCC 2 cut(s) 28, 46
BspT107I GGYRCC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 95, 201
BssMI GATC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 95, 201
Bst4CI ACNGT 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 2 cut(s) 90, 219
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 26, 206
BstNSI RCATGY 1 cut(s) 88
BstSLI GKGCMC 2 cut(s) 47, 130
BsuRI GGCC 2 cut(s) 200, 206
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 2 cut(s) 90, 219
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 55
CviAII CATG 3 cut(s) 85, 96, 115
CviJI RGCY 6 cut(s) 29, 76, 145, 166, 200, 206
CviKI_1 RGCY 6 cut(s) 29, 76, 145, 166, 200, 206
CviQI GTAC 1 cut(s) 55
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 95, 201
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 175
Eco72I CACGTG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 95, 201
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 2 cut(s) 95, 201
FaeI CATG 3 cut(s) 88, 99, 118
FaiI YATR 3 cut(s) 86, 97, 116
FaqI GGGAC 2 cut(s) 51, 170
FatI CATG 3 cut(s) 84, 95, 114
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 207
GlaI GCGC 2 cut(s) 89, 218
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 2 cut(s) 200, 206
HhaI GCGC 2 cut(s) 90, 219
Hin1II CATG 3 cut(s) 88, 99, 118
Hin6I GCGC 2 cut(s) 88, 217
HinP1I GCGC 2 cut(s) 88, 217
Hpy166II GTNNAC 2 cut(s) 128, 139
Hpy188I TCNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 128, 139
Hpy99I CGWCG 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 206
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 88, 99, 118
HspAI GCGC 2 cut(s) 88, 217
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 3 cut(s) 26, 81, 100
LpnPI CCDG 4 cut(s) 26, 62, 95, 155
LweI GCATC 1 cut(s) 177
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 245
MhlI GDGCHC 4 cut(s) 31, 47, 105, 130
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 77, 166
MslI CAYNNNNRTG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 26, 206
NcoI CCATGG 1 cut(s) 95
NdeII GATC 1 cut(s) 21
NlaIII CATG 3 cut(s) 88, 99, 118
NlaIV GGNNCC 2 cut(s) 28, 46
NspI RCATGY 1 cut(s) 88
PkrI GCNGC 1 cut(s) 208
Ple19I CGATCG 1 cut(s) 24
PmaCI CACGTG 1 cut(s) 106
PmlI CACGTG 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspCI CACGTG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 28, 46
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 4 cut(s) 31, 47, 105, 130
SetI ASST 5 cut(s) 78, 108, 147, 168, 180
SfaNI GCATC 1 cut(s) 177
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SsiI CCGC 2 cut(s) 70, 207
StyI CCWWGG 2 cut(s) 95, 201
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 192
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 209
TscAI CASTG 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 135
VneI GTGCAC 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.