AT4G23493

glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015950
Physical Location & Seq
Reverse (-)
12256050 .. 12257079
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23493.1

Sequence Viewer

Length: 264 bp
ATGCGACGTTTTCCTGCTCTTATAGAGAAGTTAAAACCGATCTTCACGGTCTCAGGATCAAACGGTAAAGTGGTAAGAACCATTGTACCGAAGAAACCTGTGAACGAGAACATTAGTGAAAGCGAAACAATGAAGAAGATGGAGGAAACGGTAGAGCCTATGGTTGCCTTAAGTAGACCACCACCATTTTCACCATTTGTCGGTCCAGTGCTCATGTATTCCCTGCTTCAATCATGGACGTCTAGCCGCGACGAAGACGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.77

Weight (kDa)

9.15

Isoelectric Point (pI)

77.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23493
fragaria_vesca FvH4_5g03010
malus_domestica MD06G1089100.v1.1
prunus_persica Prupe.5G105000_v2.0.a1 Prupe.5G105000_v2.0.a1
pyrus_communis pycom14g10470
rosa_chinensis RchiOBHm_Chr7g0196851
rosa_laevigata RLG00000003984
rosa_multiflora Rmu_sc0001083.1_g000019
rosa_roxburghii Rroxscaffold_3G00258910
rosa_rugosa Rorug07G0036200
rosa_samantha Rh7AG160600 Rh7CG169000 Rh7DG162100
rosa_wichuraiana Rw7G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 175
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 247
AclWI GGATC 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 200
AflII CTTAAG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 69, 102
Bbv12I GWGCWC 1 cut(s) 213
BccI CCATC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 243, 262
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 39, 56
BspACI CCGC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 65
BspFNI CGCG 1 cut(s) 249
BspPI GGATC 1 cut(s) 64
BspTI CTTAAG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 206
BssMI GATC 2 cut(s) 39, 56
BssNI GRCGYC 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 49, 65, 151
BstACI GRCGYC 1 cut(s) 239
BstAFI CTTAAG 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 2 cut(s) 42, 59
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 39, 56
BstUI CGCG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 86
CviAII CATG 2 cut(s) 214, 234
CviJI RGCY 3 cut(s) 157, 246, 261
CviKI_1 RGCY 3 cut(s) 157, 246, 261
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 41, 58
DpnII GATC 2 cut(s) 39, 56
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 203
FaeI CATG 2 cut(s) 217, 237
FaiI YATR 4 cut(s) 23, 161, 215, 235
FatI CATG 2 cut(s) 213, 233
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 2 cut(s) 243, 262
GluI GCNGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 2 cut(s) 217, 237
HphI GGTGA 1 cut(s) 183
Hpy166II GTNNAC 2 cut(s) 103, 176
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 103, 176
Hpy99I CGWCG 2 cut(s) 9, 254
HpyCH4III ACNGT 3 cut(s) 49, 65, 151
HpyCH4IV ACGT 2 cut(s) 7, 239
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 2 cut(s) 7, 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 217, 237
Kzo9I GATC 2 cut(s) 39, 56
LpnPI CCDG 5 cut(s) 27, 39, 111, 219, 236
MaeI CTAG 2 cut(s) 243, 262
MaeII ACGT 2 cut(s) 7, 239
MalI GATC 2 cut(s) 41, 58
MboI GATC 2 cut(s) 39, 56
MboII GAAGA 4 cut(s) 34, 103, 145, 148
MhlI GDGCHC 1 cut(s) 213
MnlI CCTC 1 cut(s) 136
MseI TTAA 2 cut(s) 32, 170
MspCI CTTAAG 1 cut(s) 169
MvnI CGCG 1 cut(s) 249
NdeII GATC 2 cut(s) 39, 56
NlaIII CATG 2 cut(s) 217, 237
PkrI GCNGC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 32, 170
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 2 cut(s) 39, 56
Sau96I GGNCC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 213
SetI ASST 3 cut(s) 10, 100, 242
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SsiI CCGC 1 cut(s) 247
SspMI CTAG 2 cut(s) 243, 262
TaaI ACNGT 3 cut(s) 49, 65, 151
TaiI ACGT 2 cut(s) 10, 242
TaqII GACCGA 1 cut(s) 191
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 32, 170
Tru9I TTAA 2 cut(s) 32, 170
TscAI CASTG 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 213
Vha464I CTTAAG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 2 cut(s) 243, 262
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.