Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015950

Physical Location & Seq

Genomic Coordinates Reverse (-)

54995778 .. 54998035

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTCAGCAATAATGCTACCAAACTGGTTTGGGCAATTTATGAAGGCAATTCTCTATCTGTACTTGATATTGATTGGGTTGGCATTATATCTGACCAAGCACCGCATCAGTTTGCTCGAGGAATTGTTTTCTTTGTTAGTTTCAACTACCGGATTGTGAAGAATAGACAAAATAGAGCTAATATGCGTGGAGTAGCTGCATTATCACCTGTTAAGAACAGATTCAAACAGATCCACCCCATCAAAGGGTCATGGGGTACTGTGGTCACTTCGACATCAAACAAACAAGGGAACAGCAATTATGGGGAAGCAGGGCTTGTTACAAAAGGGAAAACTGATCCAATTGTCCTCTTCAGTAGGCCTCCGCCCCCTCCACCTGTTATTGGACCGCTGCTTGTTCTCTCATTGTTAGAAGCCTCGTGGAGTCGCAACACCGATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.29

Weight (kDa)

9.91

Isoelectric Point (pI)

16.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23493
fragaria_vesca	FvH4_5g03010
malus_domestica	MD06G1089100.v1.1
prunus_persica	Prupe.5G105000_v2.0.a1 Prupe.5G105000_v2.0.a1
pyrus_communis	pycom14g10470
rosa_chinensis	RchiOBHm_Chr7g0196851
rosa_laevigata	RLG00000003984
rosa_multiflora	Rmu_sc0001083.1_g000019
rosa_roxburghii	Rroxscaffold_3G00258910
rosa_rugosa	Rorug07G0036200
rosa_samantha	Rh7AG160600 Rh7CG169000 Rh7DG162100
rosa_wichuraiana	Rw7G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	104, 365, 389
AclWI	GGATC	2 cut(s)	226, 332
AcuI	CTGAAG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	63, 259
AfiI	CCNNNNNNNGG	3 cut(s)	245, 246, 383
AgsI	TTSAA	2 cut(s)	145, 226
AluBI	AGCT	2 cut(s)	179, 197
AluI	AGCT	2 cut(s)	179, 197
AlwI	GGATC	2 cut(s)	226, 332
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	197, 391
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BauI	CACGAG	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	184, 378
BccI	CCATC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	198, 392
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	199, 393
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	386
BmsI	GCATC	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 246, 383
Bse1I	ACTGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	245, 246, 383
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	184, 378
BshFI	GGCC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	245, 246, 383
BsnI	GGCC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	231, 337
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	3 cut(s)	104, 365, 389
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	18
BspPI	GGATC	2 cut(s)	226, 332
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	231, 337
BssSI	CACGAG	1 cut(s)	418
Bst2BI	CACGAG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	5
BstKTI	GATC	2 cut(s)	234, 340
BstMBI	GATC	2 cut(s)	231, 337
BstV1I	GCAGC	2 cut(s)	184, 378
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	62, 258
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	5 cut(s)	179, 197, 316, 361, 416
CviKI_1	RGCY	5 cut(s)	179, 197, 316, 361, 416
CviQI	GTAC	2 cut(s)	62, 258
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	2 cut(s)	233, 339
DpnII	GATC	2 cut(s)	231, 337
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	117
FaeI	CATG	1 cut(s)	255
FaiI	YATR	5 cut(s)	42, 89, 185, 253, 303
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	251
Fnu4HI	GCNGC	2 cut(s)	198, 392
Fsp4HI	GCNGC	2 cut(s)	198, 392
GluI	GCNGC	2 cut(s)	198, 392
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	255
HinfI	GANTC	2 cut(s)	222, 424
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	231, 337
LpnPI	CCDG	5 cut(s)	11, 164, 222, 297, 390
Lsp1109I	GCAGC	2 cut(s)	184, 378
LweI	GCATC	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	265, 319
MalI	GATC	2 cut(s)	233, 339
MboI	GATC	2 cut(s)	231, 337
MboII	GAAGA	2 cut(s)	172, 343
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	5 cut(s)	36, 49, 123, 298, 342
MlyI	GAGTC	1 cut(s)	433
MnlI	CCTC	5 cut(s)	113, 359, 372, 381, 427
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	342
NdeII	GATC	2 cut(s)	231, 337
NlaIII	CATG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	199, 393
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	386
PspXI	VCTCGAGB	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	2 cut(s)	63, 259
RsaNI	GTAC	2 cut(s)	62, 258
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	198, 392
Sau3AI	GATC	2 cut(s)	231, 337
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	433
SetI	ASST	4 cut(s)	181, 199, 211, 379
SfaNI	GCATC	1 cut(s)	115
Sfr274I	CTCGAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	5 cut(s)	36, 49, 123, 298, 342
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	3 cut(s)	104, 365, 389
StuI	AGGCCT	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	118, 272
TasI	AATT	5 cut(s)	36, 49, 123, 298, 342
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	197, 391
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	386
XhoI	CTCGAG	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.