Prupe.5G105000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015950
Physical Location & Seq
Reverse (-)
11156591 .. 11157289
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G105000.2

Sequence Viewer

Length: 270 bp
ATGCGTGGATTAGCTGCGTTGTCCCCTGCAAAGATCAAGTTGTTCAAACAAGCCTACCCTATGAAAGGGTCATGGGGTACTGTGGCCACTTCAACACCAAAGAGACAAGGGAACAATATTGATCCTGGCGAAGGAGGACTTGTTGCGAAACAGAAAACCGAACCAATTGTTGCCTTCAGCAGGCCTCCGCCCCTTCCACCGGTTTTCGGACCATTGGTTCTTCTCTCTCTGCTAGAAACGTGGTGGAATCGCGATAACAATGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.7

Weight (kDa)

9.77

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23493
fragaria_vesca FvH4_5g03010
malus_domestica MD06G1089100.v1.1
prunus_persica Prupe.5G105000_v2.0.a1 Prupe.5G105000_v2.0.a1
pyrus_communis pycom14g10470
rosa_chinensis RchiOBHm_Chr7g0196851
rosa_laevigata RLG00000003984
rosa_multiflora Rmu_sc0001083.1_g000019
rosa_roxburghii Rroxscaffold_3G00258910
rosa_rugosa Rorug07G0036200
rosa_samantha Rh7AG160600 Rh7CG169000 Rh7DG162100
rosa_wichuraiana Rw7G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AciI CCGC 1 cut(s) 188
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 160
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 5 cut(s) 65, 131, 180, 199, 206
AgeI ACCGGT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 46, 93
AjnI CCWGG 1 cut(s) 124
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 84, 182
ApeKI GCWGC 1 cut(s) 14
AsiGI ACCGGT 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 131, 180, 199, 206
Bse118I RCCGGY 1 cut(s) 199
BseBI CCWGG 1 cut(s) 126
BseLI CCNNNNNNNGG 5 cut(s) 65, 131, 180, 199, 206
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 86, 184
BshTI ACCGGT 1 cut(s) 199
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 5 cut(s) 65, 131, 180, 199, 206
BsmAI GTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 7
BsnI GGCC 2 cut(s) 86, 184
Bsp143I GATC 2 cut(s) 33, 121
Bsp68I TCGCGA 1 cut(s) 252
BspACI CCGC 1 cut(s) 188
BspANI GGCC 2 cut(s) 86, 184
BspFNI CGCG 1 cut(s) 252
BspPI GGATC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssMI GATC 2 cut(s) 33, 121
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 182
BstENI CCTNNNNNAGG 3 cut(s) 63, 129, 178
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 2 cut(s) 36, 124
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 33, 121
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstUI CGCG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 86, 184
BtuMI TCGCGA 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 78
CspAI ACCGGT 1 cut(s) 199
CviAII CATG 1 cut(s) 72
CviJI RGCY 4 cut(s) 14, 53, 86, 184
CviKI_1 RGCY 4 cut(s) 14, 53, 86, 184
CviQI GTAC 1 cut(s) 78
DpnI GATC 2 cut(s) 35, 123
DpnII GATC 2 cut(s) 33, 121
EaeI YGGCCR 1 cut(s) 84
EciI GGCGGA 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 160
EcoNI CCTNNNNNAGG 3 cut(s) 63, 129, 178
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 1 cut(s) 75
FaiI YATR 2 cut(s) 62, 73
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 86, 184
HapII CCGG 1 cut(s) 200
Hin1II CATG 1 cut(s) 75
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 125, 184, 203
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 1 cut(s) 75
Kzo9I GATC 2 cut(s) 33, 121
LpnPI CCDG 5 cut(s) 39, 111, 138, 166, 213
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 239
MalI GATC 2 cut(s) 35, 123
MboI GATC 2 cut(s) 33, 121
MboII GAAGA 1 cut(s) 212
MfeI CAATTG 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 86
MnlI CCTC 2 cut(s) 128, 195
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 86
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 252
NdeII GATC 2 cut(s) 33, 121
NlaIII CATG 1 cut(s) 75
NruI TCGCGA 1 cut(s) 252
PceI AGGCCT 1 cut(s) 184
PfeI GAWTC 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 209
RruI TCGCGA 1 cut(s) 252
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 33, 121
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 126
SetI ASST 2 cut(s) 16, 242
SinI GGWCC 1 cut(s) 209
Sse9I AATT 1 cut(s) 165
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 1 cut(s) 188
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 233
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 242
TasI AATT 1 cut(s) 165
TfiI GAWTC 1 cut(s) 247
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 209
XagI CCTNNNNNAGG 3 cut(s) 63, 129, 178
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.