MD06G1089100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015950
Physical Location & Seq
Reverse (-)
21707385 .. 21708398
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1089100.v1.1.491

Sequence Viewer

Length: 264 bp
ATGCGTGGAATAGCTGTGTTATCACCCGCAAAGATCAAATTCAAACAACTATACCCTATGAAAGGGTCATGGGGTACTTTGGTCAGTTCAACACCAAAGAAACTAGGGAACAACGATAATGGGGAAGGAGGAATTGTTACAAAAGAGAAAACCGAACCAATGGTCGCCTTCAGCAGGCCTCCACCACTTCCACCAGTTTTCGGCCCATTGCTTCTTCTCTCGCTGCTAGAAACGTGGTCAAGTCGTGATAGCAATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.45

Weight (kDa)

9.45

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23493
fragaria_vesca FvH4_5g03010
malus_domestica MD06G1089100.v1.1
prunus_persica Prupe.5G105000_v2.0.a1 Prupe.5G105000_v2.0.a1
pyrus_communis pycom14g10470
rosa_chinensis RchiOBHm_Chr7g0196851
rosa_laevigata RLG00000003984
rosa_multiflora Rmu_sc0001083.1_g000019
rosa_roxburghii Rroxscaffold_3G00258910
rosa_rugosa Rorug07G0036200
rosa_samantha Rh7AG160600 Rh7CG169000 Rh7DG162100
rosa_wichuraiana Rw7G014050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 154
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 62, 174, 200
AgsI TTSAA 2 cut(s) 43, 90
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AoxI GGCC 2 cut(s) 176, 202
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 38
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 15
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BbvI GCAGC 1 cut(s) 210
BfaI CTAG 2 cut(s) 104, 227
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 174, 200
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 2 cut(s) 206, 259
BseLI CCNNNNNNNGG 3 cut(s) 62, 174, 200
BseMI GCAATG 2 cut(s) 206, 259
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 2 cut(s) 178, 204
BslI CCNNNNNNNGG 3 cut(s) 62, 174, 200
BsnI GGCC 2 cut(s) 178, 204
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 178, 204
BsrDI GCAATG 2 cut(s) 206, 259
BsrI ACTGG 1 cut(s) 194
BssMI GATC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 176
BstENI CCTNNNNNAGG 2 cut(s) 60, 172
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 210
BsuRI GGCC 2 cut(s) 178, 204
Cac8I GCNNGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 75
CviAII CATG 1 cut(s) 69
CviJI RGCY 3 cut(s) 14, 178, 204
CviKI_1 RGCY 3 cut(s) 14, 178, 204
CviQI GTAC 1 cut(s) 75
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 154
EcoNI CCTNNNNNAGG 2 cut(s) 60, 172
FaeI CATG 1 cut(s) 72
FaiI YATR 3 cut(s) 52, 59, 70
FatI CATG 1 cut(s) 68
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 104, 227
GluI GCNGC 1 cut(s) 224
HaeIII GGCC 2 cut(s) 178, 204
Hin1II CATG 1 cut(s) 72
HphI GGTGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 119, 178
HpyCH4IV ACGT 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 1 cut(s) 72
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 2 cut(s) 160, 207
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 2 cut(s) 104, 227
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 206
MluCI AATT 2 cut(s) 38, 132
MnlI CCTC 2 cut(s) 122, 189
NdeII GATC 1 cut(s) 33
NlaIII CATG 1 cut(s) 72
PceI AGGCCT 1 cut(s) 178
PkrI GCNGC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 203
SetI ASST 2 cut(s) 16, 236
Sse9I AATT 2 cut(s) 38, 132
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 1 cut(s) 27
SspMI CTAG 2 cut(s) 104, 227
StuI AGGCCT 1 cut(s) 178
TaiI ACGT 1 cut(s) 236
TasI AATT 2 cut(s) 38, 132
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 74
XagI CCTNNNNNAGG 2 cut(s) 60, 172
XapI RAATTY 1 cut(s) 38
XspI CTAG 2 cut(s) 104, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.