AT4G23880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016626
Physical Location & Seq
Reverse (-)
12415585 .. 12416691
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23880.1

Sequence Viewer

Length: 600 bp
ATGATGGATTCTCTAGCTAAATGCTTCAACAGGCTTCAAGAAAGGTACGACAACGTTCTAGAAGCAAAACCTATCTACAGAGACGACTTAGACATAACGTTGCCTCTGAACGAATCAAAGGAGGTTTCAGTAGAATCGACCAAAAAGTCTCGGTGCTTGCAGAGAGCCAAGAGGATTGACAAATCGCTGAGGTTTGAAGAAGGCGAAGAGGAAGAAGATGAACAGAATAAAAAGCCTCTGGCTAAGCCACGTAAGGTTGTGAGGTTTCAGTTAGAGAATAATAAGATCTTCGAGCCAAAGAAGACGGTGAGTTTTGATGATGATCACGAACTCAAACCAAAGGAGAATCCTCTGGAAGAAAAAGAGAGTTTGAAAATGGTTGAAGGGAAGGAAGAGGTCGTGAGGGTTAAGATCAAGATGACAAAGCATGAAGCTCAACGGTTGTTGTCGAAATGCAAAAACGACAGCGTTTTAAAGTTGGAGCATCTTATGGACCAGATCGCACACGTCCCTGTTCATCAGCTTCAAGTCGCTATGGTGATGGTTGGTTGTAATAATGAGCGACAAGGAAATGGCTGCTGGTTATCCCAGCTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

23.3

Weight (kDa)

6.56

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7890 PF25418 132 - 177 2.7e-20 Domain of unknown function (DUF7890)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23880
fragaria_vesca FvH4_5g04620
prunus_persica Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1
rosa_laevigata RLG00000004171
rosa_multiflora Rmu_sc0004154.1_g000015
rosa_roxburghii Rroxscaffold_3G00261020
rosa_rugosa Rorug07G0018100
rosa_samantha Rh7AG145800 Rh7BG145700 Rh7CG149700 Rh7DG147100
rosa_wichuraiana Rw7G012450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AclI AACGTT 2 cut(s) 54, 98
AfaI GTAC 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 6 cut(s) 28, 38, 197, 373, 383, 527
AjiI CACGTC 1 cut(s) 508
AluBI AGCT 4 cut(s) 17, 434, 523, 592
AluI AGCT 4 cut(s) 17, 434, 523, 592
Alw26I GTCTC 2 cut(s) 75, 153
ApeKI GCWGC 1 cut(s) 576
AspS9I GGNCC 1 cut(s) 493
AsuHPI GGTGA 2 cut(s) 319, 550
AvaII GGWCC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 563
BccI CCATC 1 cut(s) 535
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 75, 153
BfaI CTAG 2 cut(s) 14, 59
BfmI CTRYAG 1 cut(s) 76
BglII AGATCT 1 cut(s) 285
BisI GCNGC 1 cut(s) 577
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 493
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 493
BmsI GCATC 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 321
BseJI GATNNNNATC 1 cut(s) 321
BseMII CTCAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 563
BseYI CCCAGC 1 cut(s) 588
BslFI GGGAC 1 cut(s) 494
BsmAI GTCTC 2 cut(s) 75, 153
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 494
Bsp143I GATC 4 cut(s) 285, 322, 411, 498
Bsp1720I GCTNAGC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 180
BssMI GATC 4 cut(s) 285, 322, 411, 498
Bst4CI ACNGT 2 cut(s) 307, 441
Bst6I CTCTTC 2 cut(s) 201, 387
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 88, 188, 243
BstKTI GATC 4 cut(s) 288, 325, 414, 501
BstMAI GTCTC 2 cut(s) 75, 153
BstMBI GATC 4 cut(s) 285, 322, 411, 498
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 563
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BtrI CACGTC 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 493
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 428
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 3 cut(s) 88, 188, 243
DpnI GATC 4 cut(s) 287, 324, 413, 500
DpnII GATC 4 cut(s) 285, 322, 411, 498
DraI TTTAAA 1 cut(s) 474
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 201, 387
EarI CTCTTC 2 cut(s) 201, 387
Eco47I GGWCC 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 1 cut(s) 431
FaiI YATR 4 cut(s) 95, 429, 491, 536
FaqI GGGAC 1 cut(s) 494
FatI CATG 1 cut(s) 427
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 577
Fsp4HI GCNGC 1 cut(s) 577
FspBI CTAG 2 cut(s) 14, 59
GluI GCNGC 1 cut(s) 577
GsaI CCCAGC 1 cut(s) 592
Hin1II CATG 1 cut(s) 431
HinfI GANTC 4 cut(s) 8, 113, 134, 346
HphI GGTGA 2 cut(s) 319, 550
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 6 cut(s) 38, 59, 326, 353, 400, 415
HpyAV CCTTC 3 cut(s) 194, 377, 382
HpyCH4III ACNGT 2 cut(s) 307, 441
HpyCH4IV ACGT 4 cut(s) 54, 98, 250, 507
HpyCH4V TGCA 2 cut(s) 160, 456
HpyF3I CTNAG 3 cut(s) 88, 188, 243
HpySE526I ACGT 4 cut(s) 54, 98, 250, 507
Hsp92II CATG 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 285, 322, 411, 498
LmnI GCTCC 1 cut(s) 481
LpnPI CCDG 7 cut(s) 16, 224, 338, 509, 525, 565, 578
Lsp1109I GCAGC 1 cut(s) 563
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 14, 59
MaeII ACGT 4 cut(s) 54, 98, 250, 507
MalI GATC 4 cut(s) 287, 324, 413, 500
MboI GATC 4 cut(s) 285, 322, 411, 498
MboII GAAGA 8 cut(s) 209, 218, 224, 227, 280, 313, 368, 404
MflI RGATCY 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 459
MseI TTAA 2 cut(s) 408, 473
MspA1I CMGCKG 1 cut(s) 592
NdeII GATC 4 cut(s) 285, 322, 411, 498
NlaIII CATG 1 cut(s) 431
PfeI GAWTC 4 cut(s) 8, 113, 134, 346
PkrI GCNGC 1 cut(s) 578
Ppu21I YACGTR 1 cut(s) 251
Psp1406I AACGTT 2 cut(s) 54, 98
PspFI CCCAGC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 493
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 592
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 408, 473
SatI GCNGC 1 cut(s) 577
Sau3AI GATC 4 cut(s) 285, 322, 411, 498
Sau96I GGNCC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 493
SspMI CTAG 2 cut(s) 14, 59
TaaI ACNGT 2 cut(s) 307, 441
TaiI ACGT 4 cut(s) 57, 101, 253, 510
TaqI TCGA 3 cut(s) 137, 291, 449
TfiI GAWTC 4 cut(s) 8, 113, 134, 346
Tru1I TTAA 2 cut(s) 408, 473
Tru9I TTAA 2 cut(s) 408, 473
TseI GCWGC 1 cut(s) 576
TspDTI ATGAA 3 cut(s) 234, 444, 506
VpaK11BI GGWCC 1 cut(s) 493
XbaI TCTAGA 1 cut(s) 58
XspI CTAG 2 cut(s) 14, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.