FvH4_5g04620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016626
Physical Location & Seq
Reverse (-)
2722573 .. 2723170
598 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04620.t1

Sequence Viewer

Length: 417 bp
ATGTTGAACTCCTTGCTGTCTTTCTTCAATAAGAAGTCATCAGACGACACAATGAAACTCACGAAGCCTGGTGTCAAAGAAGCTATATATAGAGATGAGTTGAGTAAGAAGCCAATTTCAAATTACAGTCAAAAGATTACCTGCAGTTGCTTTGAAAGCTCGGAACCACTGCTCAGCAAGAGGGAAGAAAAAGAAGATGGAAAAGGATTAGTGGTGATGAGAGTAAAAGTAAAAATGACAAAGCAAGAAGCGGCTCGAATGCTTTCCAGGTGCAAAGATGGAGGCGTTCTTGAATTCAAGGATGTCGCAAATGAGCTCACAAAGATACCAATCACTCGTGTTACCCTTGATCAGTCCCCTGCTTGTACTAGAACAGCTGCAACAGGTTCAGTTCTGAAGAGCATCCCTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.38

Weight (kDa)

9.17

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7890 PF25418 72 - 116 1.9e-26 Domain of unknown function (DUF7890)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23880
fragaria_vesca FvH4_5g04620
prunus_persica Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1
rosa_laevigata RLG00000004171
rosa_multiflora Rmu_sc0004154.1_g000015
rosa_roxburghii Rroxscaffold_3G00261020
rosa_rugosa Rorug07G0018100
rosa_samantha Rh7AG145800 Rh7BG145700 Rh7CG149700 Rh7DG147100
rosa_wichuraiana Rw7G012450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 416
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 6 cut(s) 7, 28, 120, 155, 293, 298
AjnI CCWGG 2 cut(s) 67, 266
AluBI AGCT 4 cut(s) 83, 159, 316, 377
AluI AGCT 4 cut(s) 83, 159, 316, 377
Alw21I GWGCWC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 226
BanII GRGCYC 1 cut(s) 318
BauI CACGAG 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 364
BccI CCATC 2 cut(s) 191, 272
BciT130I CCWGG 2 cut(s) 69, 268
BclI TGATCA 1 cut(s) 349
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 149
BisI GCNGC 2 cut(s) 252, 378
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 2 cut(s) 253, 379
Bme1390I CCNGG 2 cut(s) 69, 268
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 69, 268
BmsI GCATC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 2 cut(s) 69, 268
BseGI GGATG 2 cut(s) 307, 402
BseJI GATNNNNATC 1 cut(s) 329
BseMII CTCAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 318
BslFI GGGAC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 349
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 149
BspQI GCTCTTC 1 cut(s) 392
BssMI GATC 1 cut(s) 349
BssSI CACGAG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 69, 268
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 307, 402
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 2 cut(s) 69, 268
BstSCI CCNGG 2 cut(s) 67, 266
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 307, 402
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 366
CviJI RGCY 7 cut(s) 67, 83, 112, 159, 254, 316, 377
CviKI_1 RGCY 7 cut(s) 67, 83, 112, 159, 254, 316, 377
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 67, 266
EcoT38I GRGCYC 1 cut(s) 318
FaiI YATR 3 cut(s) 86, 88, 90
FaqI GGGAC 1 cut(s) 340
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 252, 378
FokI GGATG 2 cut(s) 314, 389
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 252, 378
FspBI CTAG 1 cut(s) 369
GluI GCNGC 2 cut(s) 252, 378
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 3 cut(s) 43, 163, 396
Hpy188III TCNNGA 2 cut(s) 61, 290
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 144, 273, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 392
LpnPI CCDG 7 cut(s) 54, 81, 154, 253, 280, 369, 372
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 4 cut(s) 16, 197, 206, 409
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 3 cut(s) 114, 121, 293
MnlI CCTC 2 cut(s) 174, 275
MroXI GAANNNNTTC 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 377
MspR9I CCNGG 2 cut(s) 69, 268
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 2 cut(s) 69, 268
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 392
PctI GAATGC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 262
PkrI GCNGC 2 cut(s) 253, 379
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 67, 266
PspGI CCWGG 2 cut(s) 67, 266
PspN4I GGNNCC 1 cut(s) 165
PstI CTGCAG 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 392
SatI GCNGC 2 cut(s) 252, 378
Sau3AI GATC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 69, 268
SduI GDGCHC 1 cut(s) 318
SetI ASST 7 cut(s) 85, 143, 161, 272, 318, 379, 388
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 142
Sse9I AATT 3 cut(s) 114, 121, 293
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 67, 266
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 256
TasI AATT 3 cut(s) 114, 121, 293
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 254
TscAI CASTG 1 cut(s) 174
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 1 cut(s) 174
XapI RAATTY 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.