Rmu_sc0004154.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004154.1
OG0016626
Physical Location & Seq
Forward (+)
56299 .. 56664
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004154.1_g000015.1.cds

Sequence Viewer

Length: 366 bp
atggaactcaggaagcctggcgtcaaaaatgctatatatagagatgagttgagtaagaagccaatttcaaattacaggcaaaagattaactgcagttacttggaaagttcggaaccactgctcagcaagagggaagaaaaagaagatcgaaaaggagtagtggtgatgagagtaaaagttaagatgacaaagcaagaagcagctcgaatgctttccaggtgcaaaaatggaggggttcttgaattcaaggatgtggcaaatgagctcacaaagattccaatcaatcgtgttacccttgatcagtcccctgcttgtactagcagtgctgcaggtccggttttgaagagcatccctgaagaatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.69

Weight (kDa)

9.51

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23880
fragaria_vesca FvH4_5g04620
prunus_persica Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1
rosa_laevigata RLG00000004171
rosa_multiflora Rmu_sc0004154.1_g000015
rosa_roxburghii Rroxscaffold_3G00261020
rosa_rugosa Rorug07G0018100
rosa_samantha Rh7AG145800 Rh7BG145700 Rh7CG149700 Rh7DG147100
rosa_wichuraiana Rw7G012450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AcsI RAATTY 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 1 cut(s) 316
AgsI TTSAA 4 cut(s) 69, 242, 247, 343
AjnI CCWGG 2 cut(s) 16, 215
AluBI AGCT 2 cut(s) 203, 265
AluI AGCT 2 cut(s) 203, 265
Alw21I GWGCWC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 200, 326
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 212, 313
BciT130I CCWGG 2 cut(s) 18, 217
BclI TGATCA 1 cut(s) 298
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 91, 327
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 2 cut(s) 201, 327
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 2 cut(s) 202, 328
Bme1390I CCNGG 2 cut(s) 18, 217
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 2 cut(s) 18, 217
BmsI GCATC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 2 cut(s) 18, 217
BseGI GGATG 2 cut(s) 256, 348
BseJI GATNNNNATC 1 cut(s) 278
BseMII CTCAG 2 cut(s) 22, 136
BseXI GCAGC 2 cut(s) 212, 313
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 145, 298
Bsp1720I GCTNAGC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 21, 135
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 2 cut(s) 95, 331
BspMI ACCTGC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 338
BssMI GATC 2 cut(s) 145, 298
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 18, 217
Bst6I CTCTTC 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 8, 122
BstF5I GGATG 2 cut(s) 256, 348
BstKTI GATC 2 cut(s) 148, 301
BstMBI GATC 2 cut(s) 145, 298
BstNI CCWGG 2 cut(s) 18, 217
BstSCI CCNGG 2 cut(s) 16, 215
BstSFI CTRYAG 2 cut(s) 91, 327
BstV1I GCAGC 2 cut(s) 212, 313
BtsCI GGATG 2 cut(s) 256, 348
BtsI GCAGTG 2 cut(s) 116, 328
BtsIMutI CAGTG 2 cut(s) 116, 328
BveI ACCTGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 332
CseI GACGC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 315
CviJI RGCY 4 cut(s) 16, 61, 203, 265
CviKI_1 RGCY 4 cut(s) 16, 61, 203, 265
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 2 cut(s) 8, 122
DpnI GATC 2 cut(s) 147, 300
DpnII GATC 2 cut(s) 145, 298
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 16, 215
EcoT38I GRGCYC 1 cut(s) 267
FaiI YATR 3 cut(s) 35, 37, 39
FaqI GGGAC 1 cut(s) 289
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 201, 327
FokI GGATG 2 cut(s) 263, 335
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 201, 327
FspBI CTAG 1 cut(s) 318
GluI GCNGC 2 cut(s) 201, 327
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 21
HinfI GANTC 1 cut(s) 274
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 10, 239
HpyCH4V TGCA 3 cut(s) 93, 222, 329
HpyF3I CTNAG 2 cut(s) 8, 122
Hsp92I GRCGYC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 145, 298
LguI GCTCTTC 1 cut(s) 338
LpnPI CCDG 8 cut(s) 3, 30, 61, 202, 229, 315, 321, 348
Lsp1109I GCAGC 2 cut(s) 212, 313
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 95, 289
MalI GATC 2 cut(s) 147, 300
MboI GATC 2 cut(s) 145, 298
MboII GAAGA 3 cut(s) 146, 155, 355
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 63, 70, 242
MnlI CCTC 2 cut(s) 123, 224
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 2 cut(s) 87, 180
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 18, 217
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 2 cut(s) 18, 217
NdeII GATC 2 cut(s) 145, 298
NlaIV GGNNCC 1 cut(s) 114
PciSI GCTCTTC 1 cut(s) 338
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 202, 328
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 16, 215
PspGI CCWGG 2 cut(s) 16, 215
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 332
PstI CTGCAG 2 cut(s) 95, 331
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 87, 180
SatI GCNGC 2 cut(s) 201, 327
Sau3AI GATC 2 cut(s) 145, 298
Sau96I GGNCC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 18, 217
SduI GDGCHC 1 cut(s) 267
SetI ASST 4 cut(s) 205, 221, 267, 334
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 2 cut(s) 91, 327
SinI GGWCC 1 cut(s) 332
Sse9I AATT 3 cut(s) 63, 70, 242
SspI AATATT 1 cut(s) 362
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 16, 215
TaqI TCGA 2 cut(s) 148, 205
TasI AATT 3 cut(s) 63, 70, 242
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 2 cut(s) 87, 180
Tru9I TTAA 2 cut(s) 87, 180
TscAI CASTG 2 cut(s) 123, 328
TseI GCWGC 2 cut(s) 200, 326
TspRI CASTG 2 cut(s) 123, 328
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.