Rorug07G0018100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016626
Physical Location & Seq
Forward (+)
1404134 .. 1405556
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0018100.1

Sequence Viewer

Length: 930 bp
ATGACTTCACTGACCGGTTTTCCGCTACTGCTGCAACAATTCAAGGCTCTGTTCAACAAGAACCTCCTCCTCGCATGGCGCAACAAGACCGCCACCTTTCTCCAGCTCCTCTCTCCCTTATTCTTCATCTTCCTCATCTTCTGCTTCCAGAAGGCCTACGACGCTCAGACTCAGTCTTCCACTGCGTACCGGAGCGTCACCGATCCTCAGCCGCTGGTTTCGCTTCCGATCCCGCCCTGCGAGGAAAAGTTCTCTATCAAAACGCCGTGCTATGATTTCGTGTGGAGCGGAGATCAGAGCCCTAGGATTCAGAGCGTTGTCGATGCCATCATGGCTAATAATCCCGGAAGGCCAATCCCGGCGACAAAGGTTAAATCGTTTAGAACCCCGGCTGAAGTAGATGAATGGCTGTATAAGAATCCTTTGTATTGCGCAGGAGCTTTGCATTTTGTGGAAAGAAATGCCACTGTGATTAGCTATGGCCTGCAGACTAATTCTACTTCTGTTGAAAAACAAGGGAAAACTGAGGATCCCACATTCAAATTTCAAATTCCACTTCAGATTGCTGCGGAGCGTGAGATTGCTAGGTCTCTAATTGGAGATTCAAAATTTAGCTGGGTTGTTGCATTCAAGGAATTTGCACACCCTGCAATGGAGAGGCCTTCTGCAATGGATAACATAGGACCAAGGTTTTTTTTCGCAGCTGCCATGTTTGGTTTTGTCTTTCAAATGACTTCTTTGATCACAGAGAAAGAACTTAAGCTGCGACAGGCAATGACAATGATGGGCCTTTATGATAGTGCATACTGGTTCTCATGGCTTGCATGGGAGGGAATTATTACACTACTCTCAGCTCTTTTCACAGTACTCTTTGGAATGATTATTAGATCATGTAGTTTCTTAGTTTCAAATTGCCCCTTAAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

35.02

Weight (kDa)

8.68

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_3 PF12698 227 - 293 1.7e-09 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23880
fragaria_vesca FvH4_5g04620
prunus_persica Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1 Prupe.5G120300_v2.0.a1
rosa_laevigata RLG00000004171
rosa_multiflora Rmu_sc0004154.1_g000015
rosa_roxburghii Rroxscaffold_3G00261020
rosa_rugosa Rorug07G0018100
rosa_samantha Rh7AG145800 Rh7BG145700 Rh7CG149700 Rh7DG147100
rosa_wichuraiana Rw7G012450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 928
Acc16I TGCGCA 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 288
AciI CCGC 6 cut(s) 23, 90, 212, 233, 288, 569
AclWI GGATC 4 cut(s) 197, 223, 524, 537
AcsI RAATTY 4 cut(s) 542, 549, 608, 635
AcuI CTGAAG 2 cut(s) 414, 542
AfaI GTAC 2 cut(s) 188, 867
AfiI CCNNNNNNNGG 1 cut(s) 652
AflII CTTAAG 1 cut(s) 758
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 9 cut(s) 43, 55, 509, 541, 548, 606, 631, 728, 909
AluBI AGCT 7 cut(s) 106, 440, 477, 615, 704, 763, 854
AluI AGCT 7 cut(s) 106, 440, 477, 615, 704, 763, 854
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 4 cut(s) 197, 223, 524, 537
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 5 cut(s) 153, 350, 481, 659, 787
ApeKI GCWGC 5 cut(s) 31, 566, 701, 704, 763
ApoI RAATTY 4 cut(s) 542, 549, 608, 635
AsiGI ACCGGT 1 cut(s) 14
AspA2I CCTAGG 1 cut(s) 302
AspLEI GCGC 2 cut(s) 81, 434
AspS9I GGNCC 2 cut(s) 683, 787
AsuC2I CCSGG 3 cut(s) 345, 359, 389
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 683
AvrII CCTAGG 1 cut(s) 302
BamHI GGATCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 5 cut(s) 18, 553, 691, 713, 750
BccI CCATC 2 cut(s) 335, 778
BceAI ACGGC 1 cut(s) 250
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 3 cut(s) 345, 359, 389
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 2 cut(s) 303, 585
BfmI CTRYAG 1 cut(s) 485
BfrI CTTAAG 1 cut(s) 758
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 6 cut(s) 32, 212, 567, 702, 705, 764
BlnI CCTAGG 1 cut(s) 302
BlsI GCNGC 6 cut(s) 33, 213, 568, 703, 706, 765
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 3 cut(s) 345, 359, 389
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 683, 787
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 3 cut(s) 345, 359, 389
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 207
BpuMI CCSGG 3 cut(s) 345, 359, 389
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 3 cut(s) 302, 387, 686
BsaWI WCCGGW 2 cut(s) 14, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 812
Bse3DI GCAATG 3 cut(s) 657, 675, 780
BseDI CCNNGG 3 cut(s) 302, 387, 686
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 3 cut(s) 657, 675, 780
BseMII CTCAG 5 cut(s) 179, 185, 221, 516, 864
BseNI ACTGG 1 cut(s) 812
BseRI GAGGAG 3 cut(s) 56, 59, 98
BseXI GCAGC 5 cut(s) 18, 553, 691, 713, 750
BseYI CCCAGC 1 cut(s) 615
BshFI GGCC 5 cut(s) 155, 352, 483, 661, 789
BshTI ACCGGT 1 cut(s) 14
BsiSI CCGG 5 cut(s) 15, 190, 345, 359, 389
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 1 cut(s) 594
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 5 cut(s) 155, 352, 483, 661, 789
Bso31I GGTCTC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 6 cut(s) 202, 228, 292, 529, 741, 887
BspACI CCGC 6 cut(s) 23, 90, 212, 233, 288, 569
BspANI GGCC 5 cut(s) 155, 352, 483, 661, 789
BspCNI CTCAG 5 cut(s) 178, 184, 220, 517, 863
BspLI GGNNCC 1 cut(s) 531
BspMAI CTGCAG 1 cut(s) 489
BspPI GGATC 4 cut(s) 197, 223, 524, 537
BspTI CTTAAG 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 288
BsrDI GCAATG 3 cut(s) 657, 675, 780
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 812
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 302, 387, 686
BssMI GATC 6 cut(s) 202, 228, 292, 529, 741, 887
BssT1I CCWWGG 2 cut(s) 302, 686
Bst4CI ACNGT 2 cut(s) 469, 865
BstAFI CTTAAG 1 cut(s) 758
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 485, 822
BstDEI CTNAG 6 cut(s) 165, 171, 207, 525, 850, 901
BstHHI GCGC 2 cut(s) 81, 434
BstKTI GATC 6 cut(s) 205, 231, 295, 532, 744, 890
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 6 cut(s) 202, 228, 292, 529, 741, 887
BstMWI GCNNNNNNNGC 5 cut(s) 31, 161, 220, 332, 647
BstSCI CCNGG 3 cut(s) 343, 357, 387
BstSFI CTRYAG 1 cut(s) 485
BstV1I GCAGC 5 cut(s) 18, 553, 691, 713, 750
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 5 cut(s) 155, 352, 483, 661, 789
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 3 cut(s) 8, 180, 465
Cac8I GCNNGC 2 cut(s) 485, 822
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 2 cut(s) 81, 434
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 683, 787
CseI GACGC 2 cut(s) 170, 184
Csp6I GTAC 2 cut(s) 187, 866
CspAI ACCGGT 1 cut(s) 14
CviAII CATG 6 cut(s) 75, 331, 709, 816, 825, 891
CviQI GTAC 2 cut(s) 187, 866
DdeI CTNAG 6 cut(s) 165, 171, 207, 525, 850, 901
DpnI GATC 6 cut(s) 204, 230, 294, 531, 743, 889
DpnII GATC 6 cut(s) 202, 228, 292, 529, 741, 887
Eco130I CCWWGG 2 cut(s) 302, 686
Eco147I AGGCCT 2 cut(s) 155, 661
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 414, 542
EcoT14I CCWWGG 2 cut(s) 302, 686
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 2 cut(s) 302, 686
FaeI CATG 6 cut(s) 78, 334, 712, 819, 828, 894
FatI CATG 6 cut(s) 74, 330, 708, 815, 824, 890
FauI CCCGC 1 cut(s) 240
FbaI TGATCA 1 cut(s) 741
Fnu4HI GCNGC 6 cut(s) 32, 212, 567, 702, 705, 764
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 6 cut(s) 32, 212, 567, 702, 705, 764
FspBI CTAG 2 cut(s) 303, 585
FspI TGCGCA 1 cut(s) 433
GlaI GCGC 2 cut(s) 80, 433
GluI GCNGC 6 cut(s) 32, 212, 567, 702, 705, 764
GsaI CCCAGC 1 cut(s) 619
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 5 cut(s) 155, 352, 483, 661, 789
HapII CCGG 5 cut(s) 15, 190, 345, 359, 389
HgaI GACGC 2 cut(s) 170, 184
HhaI GCGC 2 cut(s) 81, 434
Hin1II CATG 6 cut(s) 78, 334, 712, 819, 828, 894
Hin6I GCGC 2 cut(s) 79, 432
HinP1I GCGC 2 cut(s) 79, 432
HinfI GANTC 4 cut(s) 169, 307, 418, 602
HpaII CCGG 5 cut(s) 15, 190, 345, 359, 389
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 5 cut(s) 168, 228, 297, 312, 561
Hpy188III TCNNGA 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 145, 342, 672
HpyCH4III ACNGT 2 cut(s) 469, 865
HpyCH4V TGCA 9 cut(s) 34, 445, 487, 626, 641, 650, 668, 803, 824
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 161, 220, 332, 647
HpyF3I CTNAG 6 cut(s) 165, 171, 207, 525, 850, 901
Hsp92II CATG 6 cut(s) 78, 334, 712, 819, 828, 894
HspAI GCGC 2 cut(s) 79, 432
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 6 cut(s) 202, 228, 292, 529, 741, 887
LmnI GCTCC 5 cut(s) 111, 192, 285, 437, 571
Lsp1109I GCAGC 5 cut(s) 18, 553, 691, 713, 750
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 303, 585
MaeIII GTNAC 1 cut(s) 196
MalI GATC 6 cut(s) 204, 230, 294, 531, 743, 889
MbiI CCGCTC 1 cut(s) 288
MboI GATC 6 cut(s) 202, 228, 292, 529, 741, 887
MboII GAAGA 4 cut(s) 115, 121, 130, 168
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 9 cut(s) 38, 493, 542, 549, 594, 608, 635, 834, 910
MlyI GAGTC 1 cut(s) 163
MseI TTAA 3 cut(s) 372, 759, 920
MspA1I CMGCKG 2 cut(s) 214, 704
MspCI CTTAAG 1 cut(s) 758
MspI CCGG 5 cut(s) 15, 190, 345, 359, 389
MspR9I CCNGG 3 cut(s) 345, 359, 389
Mva1269I GAATGC 1 cut(s) 626
MwoI GCNNNNNNNGC 5 cut(s) 31, 161, 220, 332, 647
NciI CCSGG 3 cut(s) 345, 359, 389
NdeII GATC 6 cut(s) 202, 228, 292, 529, 741, 887
NlaIII CATG 6 cut(s) 78, 334, 712, 819, 828, 894
NlaIV GGNNCC 1 cut(s) 531
NmuCI GTSAC 1 cut(s) 196
NsbI TGCGCA 1 cut(s) 433
PceI AGGCCT 2 cut(s) 155, 661
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 3 cut(s) 307, 418, 602
PflFI GACNNNGTC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 343
PinAI ACCGGT 1 cut(s) 14
PkrI GCNGC 6 cut(s) 33, 213, 568, 703, 706, 765
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PsiI TTATAA 1 cut(s) 928
PspFI CCCAGC 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 2 cut(s) 683, 787
PstI CTGCAG 1 cut(s) 489
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 2 cut(s) 188, 867
RsaNI GTAC 2 cut(s) 187, 866
SaqAI TTAA 3 cut(s) 372, 759, 920
SatI GCNGC 6 cut(s) 32, 212, 567, 702, 705, 764
Sau3AI GATC 6 cut(s) 202, 228, 292, 529, 741, 887
Sau96I GGNCC 2 cut(s) 683, 787
ScaI AGTACT 1 cut(s) 867
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 3 cut(s) 345, 359, 389
SduI GDGCHC 1 cut(s) 302
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 485
SinI GGWCC 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 9 cut(s) 38, 493, 542, 549, 594, 608, 635, 834, 910
SseBI AGGCCT 2 cut(s) 155, 661
SsiI CCGC 6 cut(s) 23, 90, 212, 233, 288, 569
SspMI CTAG 2 cut(s) 303, 585
StuI AGGCCT 2 cut(s) 155, 661
StyD4I CCNGG 3 cut(s) 343, 357, 387
StyI CCWWGG 2 cut(s) 302, 686
TaaI ACNGT 2 cut(s) 469, 865
TaqI TCGA 1 cut(s) 321
TasI AATT 9 cut(s) 38, 493, 542, 549, 594, 608, 635, 834, 910
TatI WGTACW 1 cut(s) 865
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 3 cut(s) 307, 418, 602
Tru1I TTAA 3 cut(s) 372, 759, 920
Tru9I TTAA 3 cut(s) 372, 759, 920
TscAI CASTG 3 cut(s) 15, 187, 472
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 5 cut(s) 31, 566, 701, 704, 763
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 115, 417
TspRI CASTG 3 cut(s) 15, 187, 472
Tth111I GACNNNGTC 1 cut(s) 172
Vha464I CTTAAG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 4 cut(s) 542, 549, 608, 635
XmaJI CCTAGG 1 cut(s) 302
XspI CTAG 2 cut(s) 303, 585
ZrmI AGTACT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.