AT4G24880

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012054
Physical Location & Seq
Forward (+)
12808342 .. 12811745
3404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24880.1

Sequence Viewer

Length: 1254 bp
ATGGCGCCTCATGAAATTCGCCGTCCTTTCAAGCGACGACCTATCTCCGATCAACAGAAACGCCGAGAGCTTTCTCTTATTCGTCAGACTCAGCATCGCAGTGATGCTCAGCAGCGAGCCCGAAACCTCGCCTCTTCCTTAATCTCGCTCCAATCCTCCTCTCCCGATGTCGACCCAGAGATACTATCTGAAGCCGTGCCTGAGCTTGTAGGAACCGAATCGGAATCGAGTAGCTTTGACGTTCGTCAAGCTTCGAGGCTCAGAGGACCTGAGGCACGCAAGTGGTTCGCAAAGCAGCTAATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGGTATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGATGGAACAACTGTTAGTAGAGTACGAAATGGGTCCACTTTGCATCTTTTCCCTTCTGCATTACCTGGTGGTGCGAGGAAAAAAGGCGCTTCTGGCCCTGCAAACTCGTACTCTATACTAGACTGTATCTTTCACGAGTCGGATCAAACATACTATGTGATTGATATGGTTTGTTGGAGAGGTTACTCGCTTTATGAATGCACATCAGAGTTCAGGTTCTTTTGGTTGCAATCGAAACTTGCTGAGACCGGTGCTTGTGATCCGCCTTCCGTCTACCACAAGTTCAGGTTCAGTGTAGTTCCTTTTTACAACTGCGACCAAAGCGGACTTCACTCAGCTTATACAGGATCATTACCTTATGTCAGGGATGGATTGTTATTTTATAACAAACATGCACATTATCATACTGGAAATACTCCTCTGGTGTTGATATGGAAGGATGAGAGCTGTAGTCAGTATGTCATCGATACTGATAACAATGGAGAAGTTCCAAACCAACAACATATTGTCTTGGAGTTGCAAGAAGAAGGAAAACTTGTAACATCTGATGATCCACCTGTACCATTCAGTTGCTTAAATGCAGATTTTGTAAAACAGTCAGGGCTGTCTTCAGGAAGTCTTATTCGCTTTGCCATTGGCGATGGAGGGCTGAAATGTGTGGATGGTAGATTTGAGAAGGCGGATTTGCAATATATCGGTGTATCAAATCGAGCCCGAGCCTTTGCTGATAGCTATTCCAAGATCATGTTTCAATATATGGCCCGACATTCTCCCCTGAAAGTAGAAGATCTTGCTTCTACGATTTCACCTGAGGACCAACAGGACAAGCCCCCTGAAGTGGAGATGTCCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

46.97

Weight (kDa)

6.03

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 99 - 276 2.2e-56 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24880 AT4G24880
fragaria_vesca FvH4_5g08230 FvH4_5g08230 FvH4_5g08230 FvH4_5g08230
malus_domestica MD14G1157700.v1.1
prunus_persica Prupe.5G151700_v2.0.a1
pyrus_communis pycom14g13120
rosa_chinensis RchiOBHm_Chr7g0190291
rosa_laevigata RLG00000004546
rosa_multiflora Rmu_sc0005487.1_g000005
rosa_roxburghii Rroxscaffold_3G00264760
rosa_rugosa Rorug06G0503500
rosa_samantha Rh7AG109200 Rh7BG111600 Rh7CG114000 Rh7DG112200
rosa_wichuraiana Rw7G009470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AatII GACGTC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 171, 672
AciI CCGC 3 cut(s) 662, 723, 1079
AclWI GGATC 4 cut(s) 549, 653, 754, 944
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 3 cut(s) 210, 993, 1254
AcyI GRCGYC 2 cut(s) 5, 324
AfaI GTAC 3 cut(s) 423, 509, 960
AfiI CCNNNNNNNGG 1 cut(s) 1237
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 2 cut(s) 31, 1151
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AleI CACNNNNGTG 1 cut(s) 280
AluBI AGCT 9 cut(s) 70, 205, 234, 251, 298, 371, 737, 846, 1131
AluI AGCT 9 cut(s) 70, 205, 234, 251, 298, 371, 737, 846, 1131
Alw26I GTCTC 1 cut(s) 638
AlwI GGATC 4 cut(s) 549, 653, 754, 944
Ama87I CYCGRG 1 cut(s) 1113
AoxI GGCC 2 cut(s) 493, 1158
ApeKI GCWGC 2 cut(s) 112, 295
ApoI RAATTY 1 cut(s) 15
AsiGI ACCGGT 1 cut(s) 647
AspLEI GCGC 2 cut(s) 7, 488
AspS9I GGNCC 5 cut(s) 266, 432, 494, 1159, 1213
AsuHPI GGTGA 1 cut(s) 1197
AvaI CYCGRG 1 cut(s) 1113
AvaII GGWCC 3 cut(s) 266, 432, 1213
AxyI CCTNAGG 2 cut(s) 270, 1209
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 121, 1114
BauI CACGAG 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 999
BbvI GCAGC 2 cut(s) 124, 307
BccI CCATC 4 cut(s) 395, 761, 1034, 1055
BceAI ACGGC 2 cut(s) 6, 179
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 1 cut(s) 518
BfmI CTRYAG 1 cut(s) 847
BfoI RGCGCY 2 cut(s) 8, 489
BglII AGATCT 1 cut(s) 1186
BisI GCNGC 2 cut(s) 113, 296
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 2 cut(s) 114, 297
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 3 cut(s) 266, 432, 1213
BmeT110I CYCGRG 1 cut(s) 1113
BmgT120I GGNCC 5 cut(s) 266, 432, 494, 1159, 1213
BmiI GGNNCC 3 cut(s) 6, 214, 433
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 3 cut(s) 94, 103, 451
BoxI GACNNNNGTC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 999
Bpu10I CCTNAGC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 864
BsaHI GRCGYC 2 cut(s) 5, 324
BsaI GGTCTC 1 cut(s) 638
BsaWI WCCGGW 1 cut(s) 647
Bsc4I CCNNNNNNNGG 1 cut(s) 1237
Bse118I RCCGGY 1 cut(s) 647
Bse1I ACTGG 1 cut(s) 811
Bse21I CCTNAGG 2 cut(s) 270, 1209
BseBI CCWGG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 864
BseGI GGATG 4 cut(s) 321, 772, 844, 1066
BseLI CCNNNNNNNGG 1 cut(s) 1237
BseMII CTCAG 8 cut(s) 104, 122, 192, 261, 274, 633, 747, 1200
BseNI ACTGG 1 cut(s) 811
BseRI GAGGAG 2 cut(s) 148, 807
BseXI GCAGC 2 cut(s) 124, 307
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 2 cut(s) 495, 1160
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 647
BshVI ATCGAT 1 cut(s) 864
BsiHKCI CYCGRG 1 cut(s) 1113
BsiSI CCGG 1 cut(s) 648
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 1237
BsmAI GTCTC 1 cut(s) 638
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 2 cut(s) 495, 1160
Bso31I GGTCTC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 1113
Bsp1286I GDGCHC 2 cut(s) 121, 1114
Bsp143I GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 3 cut(s) 662, 723, 1079
BspANI GGCC 2 cut(s) 495, 1160
BspCNI CTCAG 8 cut(s) 103, 121, 193, 262, 273, 634, 746, 1201
BspDI ATCGAT 1 cut(s) 864
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 6, 214, 433
BspPI GGATC 4 cut(s) 549, 653, 754, 944
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 638
BsrFI RCCGGY 1 cut(s) 647
BsrI ACTGG 1 cut(s) 811
BssAI RCCGGY 1 cut(s) 647
BssMI GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
BssNI GRCGYC 2 cut(s) 5, 324
BssSI CACGAG 1 cut(s) 533
Bst2BI CACGAG 1 cut(s) 533
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 412, 524, 996
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 2 cut(s) 5, 324
BstC8I GCNNGC 2 cut(s) 117, 277
BstDEI CTNAG 8 cut(s) 90, 108, 201, 260, 270, 642, 733, 1209
BstF5I GGATG 4 cut(s) 321, 772, 844, 1066
BstH2I RGCGCY 2 cut(s) 8, 489
BstHHI GCGC 2 cut(s) 7, 488
BstKTI GATC 8 cut(s) 52, 321, 544, 661, 749, 952, 1143, 1189
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
BstMWI GCNNNNNNNGC 3 cut(s) 368, 492, 720
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 794
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 1 cut(s) 847
BstV1I GCAGC 2 cut(s) 124, 307
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 1 cut(s) 1186
BstYI RGATCY 1 cut(s) 1186
Bsu15I ATCGAT 1 cut(s) 864
Bsu36I CCTNAGG 2 cut(s) 270, 1209
BsuRI GGCC 2 cut(s) 495, 1160
BsuTUI ATCGAT 1 cut(s) 864
BtgZI GCGATG 2 cut(s) 80, 1053
BtsCI GGATG 4 cut(s) 321, 772, 844, 1066
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 106, 697
Cac8I GCNNGC 2 cut(s) 117, 277
CciI TCATGA 1 cut(s) 10
CfoI GCGC 2 cut(s) 7, 488
Cfr10I RCCGGY 1 cut(s) 647
Cfr13I GGNCC 5 cut(s) 266, 432, 494, 1159, 1213
ClaI ATCGAT 1 cut(s) 864
CsiI ACCWGGT 1 cut(s) 463
Csp6I GTAC 3 cut(s) 422, 508, 959
CspAI ACCGGT 1 cut(s) 647
CviAII CATG 3 cut(s) 11, 791, 1144
CviQI GTAC 3 cut(s) 422, 508, 959
DdeI CTNAG 8 cut(s) 90, 108, 201, 260, 270, 642, 733, 1209
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 51, 320, 543, 660, 748, 951, 1142, 1188
DpnII GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 2 cut(s) 651, 1094
Eco24I GRGCYC 2 cut(s) 121, 1114
Eco31I GGTCTC 1 cut(s) 638
Eco47I GGWCC 3 cut(s) 266, 432, 1213
Eco57I CTGAAG 3 cut(s) 210, 993, 1254
Eco81I CCTNAGG 2 cut(s) 270, 1209
Eco88I CYCGRG 1 cut(s) 1113
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 121, 1114
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 3 cut(s) 14, 794, 1147
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 1 cut(s) 311
FatI CATG 3 cut(s) 10, 790, 1143
FblI GTMKAC 2 cut(s) 171, 672
Fnu4HI GCNGC 2 cut(s) 113, 296
FokI GGATG 4 cut(s) 328, 779, 851, 1073
FriOI GRGCYC 2 cut(s) 121, 1114
Fsp4HI GCNGC 2 cut(s) 113, 296
FspBI CTAG 1 cut(s) 518
GlaI GCGC 2 cut(s) 6, 487
GluI GCNGC 2 cut(s) 113, 296
GsaI CCCAGC 1 cut(s) 375
HaeII RGCGCY 2 cut(s) 8, 489
HaeIII GGCC 2 cut(s) 495, 1160
HapII CCGG 1 cut(s) 648
HhaI GCGC 2 cut(s) 7, 488
Hin1I GRCGYC 2 cut(s) 5, 324
Hin1II CATG 3 cut(s) 14, 794, 1147
Hin6I GCGC 2 cut(s) 5, 486
HinP1I GCGC 2 cut(s) 5, 486
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 4 cut(s) 88, 218, 224, 536
HpaII CCGG 1 cut(s) 648
HphI GGTGA 1 cut(s) 1197
Hpy166II GTNNAC 3 cut(s) 172, 435, 673
Hpy188III TCNNGA 4 cut(s) 11, 164, 533, 1011
Hpy8I GTNNAC 3 cut(s) 172, 435, 673
Hpy99I CGWCG 2 cut(s) 39, 326
HpyAV CCTTC 5 cut(s) 462, 675, 829, 920, 1069
HpyCH4III ACNGT 3 cut(s) 412, 524, 996
HpyCH4IV ACGT 2 cut(s) 240, 324
HpyCH4V TGCA 9 cut(s) 442, 458, 500, 600, 628, 794, 919, 980, 1087
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 492, 720
HpyF3I CTNAG 8 cut(s) 90, 108, 201, 260, 270, 642, 733, 1209
HpySE526I ACGT 2 cut(s) 240, 324
Hsp92I GRCGYC 2 cut(s) 5, 324
Hsp92II CATG 3 cut(s) 14, 794, 1147
HspAI GCGC 2 cut(s) 5, 486
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 2 cut(s) 124, 307
LweI GCATC 3 cut(s) 94, 103, 451
MabI ACCWGGT 1 cut(s) 463
MaeI CTAG 1 cut(s) 518
MaeII ACGT 2 cut(s) 240, 324
MaeIII GTNAC 3 cut(s) 303, 581, 937
MalI GATC 8 cut(s) 51, 320, 543, 660, 748, 951, 1142, 1188
MboI GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
MboII GAAGA 4 cut(s) 126, 935, 999, 1196
MflI RGATCY 1 cut(s) 1186
MhlI GDGCHC 2 cut(s) 121, 1114
MluCI AATT 2 cut(s) 15, 334
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 82, 545
MmeI TCCRAC 2 cut(s) 519, 554
MseI TTAA 3 cut(s) 140, 338, 974
MslI CAYNNNNRTG 2 cut(s) 99, 280
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 368, 492, 720
NarI GGCGCC 1 cut(s) 5
NdeII GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
NlaIII CATG 3 cut(s) 14, 794, 1147
NlaIV GGNNCC 3 cut(s) 6, 214, 433
NmeAIII GCCGAG 1 cut(s) 89
NspI RCATGY 1 cut(s) 794
OliI CACNNNNGTG 1 cut(s) 280
PagI TCATGA 1 cut(s) 10
PctI GAATGC 1 cut(s) 602
PfeI GAWTC 2 cut(s) 218, 224
PinAI ACCGGT 1 cut(s) 647
PkrI GCNGC 2 cut(s) 114, 297
PleI GAGTC 2 cut(s) 82, 544
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 82, 544
PpuMI RGGWCCY 1 cut(s) 266
PshAI GACNNNNGTC 1 cut(s) 243
PsiI TTATAA 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 463
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 3 cut(s) 6, 214, 433
PspPI GGNCC 5 cut(s) 266, 432, 494, 1159, 1213
PspPPI RGGWCCY 1 cut(s) 266
PsuI RGATCY 1 cut(s) 1186
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 3 cut(s) 423, 509, 960
RsaNI GTAC 3 cut(s) 422, 508, 959
RseI CAYNNNNRTG 2 cut(s) 99, 280
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 140, 338, 974
SatI GCNGC 2 cut(s) 113, 296
Sau3AI GATC 8 cut(s) 49, 318, 541, 658, 746, 949, 1140, 1186
Sau96I GGNCC 5 cut(s) 266, 432, 494, 1159, 1213
SchI GAGTC 2 cut(s) 82, 545
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 2 cut(s) 121, 1114
SexAI ACCWGGT 1 cut(s) 463
SfaNI GCATC 3 cut(s) 94, 103, 451
SfcI CTRYAG 1 cut(s) 847
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 3 cut(s) 266, 432, 1213
SmiMI CAYNNNNRTG 2 cut(s) 99, 280
Sse9I AATT 2 cut(s) 15, 334
SsiI CCGC 3 cut(s) 662, 723, 1079
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 3 cut(s) 412, 524, 996
TaiI ACGT 2 cut(s) 243, 327
TaqI TCGA 7 cut(s) 171, 227, 254, 321, 632, 864, 1108
TasI AATT 2 cut(s) 15, 334
TfiI GAWTC 2 cut(s) 218, 224
Tru1I TTAA 3 cut(s) 140, 338, 974
Tru9I TTAA 3 cut(s) 140, 338, 974
TscAI CASTG 2 cut(s) 106, 697
TseI GCWGC 2 cut(s) 112, 295
TspDTI ATGAA 3 cut(s) 27, 384, 609
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 2 cut(s) 106, 697
VpaK11BI GGWCC 3 cut(s) 266, 432, 1213
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 794
XmiI GTMKAC 2 cut(s) 171, 672
XspI CTAG 1 cut(s) 518
ZraI GACGTC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.