pycom14g13120

snRNA import into nucleus

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
16115652 .. 16117902
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13120.1

Sequence Viewer

Length: 1218 bp
ATGGCGCCGCACGATCTCCGCCGCGCGTACAAGAGACCGGCGATCTCAGACCAGCAGAGGCGCCGAGAGCTTGCGCTTCAGCGCCAAGAGCAAGCCCGGCGCGACGTCCAGCTCCAGGCGCGCCGCTTAGCCTCTACCCTCCTCTCCCTCCCGCCCGAACATGAACAGCCCTCCGAACCCGAACCCGAATCCGCCTCCGAATCCAAGGAGTCCGAATCCGACGTCGAATTCGACCTTCGCAACGCTTCGAAGCTCAGAGGCACGGAGGCCCGAAAATGGTTCGCCAGGCAGCTCATGCTCCCGGAGTGGATGATCGACGTCCCAAACCGCTTGCCCCACGACTGGTACGTGTTTGCGAGGCCATCTGGGAAGCGATGCTTTGTCGTTTCGTCCGACGGAGCCACAATCAGCCGGCAACGAAACGGCACTGTTCTGCACCGTTTCCCGTCGGCTCTTCCCAATGGTTCCAGGAGCCGAGACGGGTCGGGTTCCGCTCAGTCGTATTCTATACTGGACTGTATATTTCACGAGATGGACCAGACGTACTACGTAATTGACATGGTGTGCTGGAGAGGTTACTCTTTGTTCGATTGCACGGCCGAGTTTAGGTTTTTCTGGCTGAGTTCTAAGCTCGGGGAGACGGGGGCTTGTGAGGCTCCGTCACACTATCATAGGTATAGGTTCAGCTTGGTTCCTGTGCATAACTGTGATCACAGCGGGCTATACTCAGCCTATGCTGGAGCGGTACCGTATGTAAAGGATGGAAATACCCCATTAGCATTAGTCTGGAAGGATGAGAGTTGCAGTCAGTACGTTATTGACACAGATAACAAAGGACAGGTTCCAAGCCATCAACAGGTAGTTTTGGAGCTGCAAGGTGATGGAAATGTGACTACATCCGATGATCCACCAGTTGTATTTGGTTGCTTGGACTCAGCCTTCATACAACAGTCAGGGTTGCATTCAGGATGTCTTCTTCGTTTTGCTATTGGTGATGGAGGATTAAGTGTTGTAGATGGGAAGCTTGAGAAGGCAGATTTACATTACCTTGGCAAGTCCAATCGTGCCCGTGCTTTTGCAGATACTTACTCCAAGATTATGTTTCAGAATATGGTTCGGCGGTCTCCCCTGAAAATTGACGATTTGGTAGCATCAATCAATTCACCAGATGATGAAGGAAACAGACCTGTTGTACCGGAAGTTGATATGGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

45.54

Weight (kDa)

6.08

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 97 - 255 6.9e-44 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012054)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 108, 225, 321
Acc65I GGTACC 1 cut(s) 745
AccB1I GGYRCC 3 cut(s) 4, 60, 745
AccBSI CCGCTC 2 cut(s) 494, 743
AccII CGCG 4 cut(s) 24, 26, 102, 121
AclWI GGATC 1 cut(s) 899
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 62
AcyI GRCGYC 5 cut(s) 5, 61, 105, 222, 318
AfaI GTAC 6 cut(s) 29, 347, 545, 747, 812, 1194
AfiI CCNNNNNNNGG 5 cut(s) 115, 276, 342, 606, 856
AflIII ACRYGT 1 cut(s) 348
AjnI CCWGG 3 cut(s) 114, 284, 467
AluBI AGCT 8 cut(s) 70, 112, 253, 292, 631, 687, 871, 1024
AluI AGCT 8 cut(s) 70, 112, 253, 292, 631, 687, 871, 1024
Alw26I GTCTC 4 cut(s) 28, 471, 632, 1128
AlwI GGATC 1 cut(s) 899
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 3 cut(s) 267, 359, 597
ApeKI GCWGC 2 cut(s) 289, 871
ApoI RAATTY 1 cut(s) 227
ArsI GACNNNNNNTTYG 4 cut(s) 207, 212, 239, 244
AscI GGCGCGCC 1 cut(s) 119
Asp718I GGTACC 1 cut(s) 745
AspLEI GCGC 8 cut(s) 7, 26, 63, 76, 84, 102, 121, 123
AspS9I GGNCC 2 cut(s) 268, 535
AsuC2I CCSGG 2 cut(s) 97, 302
AsuHPI GGTGA 3 cut(s) 890, 1004, 1155
AsuII TTCGAA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 1069
BanI GGYRCC 3 cut(s) 4, 60, 745
BauI CACGAG 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 965
BbvI GCAGC 2 cut(s) 301, 858
BccI CCATC 7 cut(s) 370, 526, 755, 858, 875, 989, 1010
BceAI ACGGC 2 cut(s) 439, 612
BciT130I CCWGG 3 cut(s) 116, 286, 469
BclI TGATCA 1 cut(s) 709
BcnI CCSGG 2 cut(s) 97, 302
BcoDI GTCTC 4 cut(s) 28, 471, 632, 1128
BfoI RGCGCY 3 cut(s) 8, 64, 85
BisI GCNGC 5 cut(s) 8, 22, 124, 290, 872
BlpI GCTNAGC 1 cut(s) 127
BlsI GCNGC 5 cut(s) 9, 23, 125, 291, 873
Bme1390I CCNGG 5 cut(s) 97, 116, 286, 302, 469
Bme18I GGWCC 1 cut(s) 535
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 268, 535
BmrFI CCNGG 5 cut(s) 97, 116, 286, 302, 469
BmsI GCATC 2 cut(s) 365, 1160
BpiI GAAGAC 1 cut(s) 965
BpmI CTGGAG 3 cut(s) 98, 589, 759
Bpu1102I GCTNAGC 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 1046
BpuMI CCSGG 2 cut(s) 97, 302
BsaAI YACGTR 2 cut(s) 349, 550
BsaHI GRCGYC 5 cut(s) 5, 61, 105, 222, 318
BsaI GGTCTC 2 cut(s) 28, 1128
BsaJI CCNNGG 2 cut(s) 204, 1048
BsaWI WCCGGW 1 cut(s) 1195
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 276, 342, 606, 856
Bse118I RCCGGY 2 cut(s) 37, 411
Bse1I ACTGG 3 cut(s) 347, 516, 911
BseBI CCWGG 3 cut(s) 116, 286, 469
BseDI CCNNGG 2 cut(s) 204, 1048
BseGI GGATG 5 cut(s) 315, 766, 799, 896, 974
BseLI CCNNNNNNNGG 5 cut(s) 115, 276, 342, 606, 856
BseMII CTCAG 6 cut(s) 60, 268, 509, 611, 741, 948
BseNI ACTGG 3 cut(s) 347, 516, 911
BsePI GCGCGC 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 1069
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 301, 858
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 4 cut(s) 24, 26, 102, 121
Bsh1285I CGRYCG 1 cut(s) 600
BshFI GGCC 3 cut(s) 269, 361, 599
BshNI GGYRCC 3 cut(s) 4, 60, 745
BsiEI CGRYCG 1 cut(s) 600
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 5 cut(s) 38, 97, 302, 412, 1196
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 5 cut(s) 115, 276, 342, 606, 856
BsmAI GTCTC 4 cut(s) 28, 471, 632, 1128
BsmBI CGTCTC 2 cut(s) 471, 632
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 3 cut(s) 269, 361, 599
Bso31I GGTCTC 2 cut(s) 28, 1128
BsoBI CYCGRG 1 cut(s) 632
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 1069
Bsp143I GATC 5 cut(s) 13, 42, 312, 709, 904
Bsp1720I GCTNAGC 1 cut(s) 127
BspANI GGCC 3 cut(s) 269, 361, 599
BspCNI CTCAG 6 cut(s) 59, 267, 508, 612, 740, 947
BspFNI CGCG 4 cut(s) 24, 26, 102, 121
BspPI GGATC 1 cut(s) 899
BspQI GCTCTTC 1 cut(s) 459
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 3 cut(s) 4, 60, 745
BspTNI GGTCTC 2 cut(s) 28, 1128
BsrBI CCGCTC 2 cut(s) 494, 743
BsrFI RCCGGY 2 cut(s) 37, 411
BsrI ACTGG 3 cut(s) 347, 516, 911
BssAI RCCGGY 2 cut(s) 37, 411
BssECI CCNNGG 2 cut(s) 204, 1048
BssHII GCGCGC 1 cut(s) 119
BssMI GATC 5 cut(s) 13, 42, 312, 709, 904
BssNI GRCGYC 5 cut(s) 5, 61, 105, 222, 318
BssSI CACGAG 1 cut(s) 527
BssT1I CCWWGG 2 cut(s) 204, 1048
Bst2BI CACGAG 1 cut(s) 527
Bst2UI CCWGG 3 cut(s) 116, 286, 469
Bst4CI ACNGT 6 cut(s) 430, 440, 518, 707, 750, 951
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 5 cut(s) 5, 61, 105, 222, 318
BstAPI GCANNNNNTGC 1 cut(s) 295
BstBAI YACGTR 2 cut(s) 349, 550
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 6 cut(s) 72, 93, 121, 332, 413, 719
BstDEI CTNAG 8 cut(s) 46, 127, 254, 495, 620, 627, 727, 934
BstF5I GGATG 5 cut(s) 315, 766, 799, 896, 974
BstFNI CGCG 4 cut(s) 24, 26, 102, 121
BstH2I RGCGCY 3 cut(s) 8, 64, 85
BstHHI GCGC 8 cut(s) 7, 26, 63, 76, 84, 102, 121, 123
BstKTI GATC 5 cut(s) 16, 45, 315, 712, 907
BstMAI GTCTC 4 cut(s) 28, 471, 632, 1128
BstMBI GATC 5 cut(s) 13, 42, 312, 709, 904
BstMCI CGRYCG 1 cut(s) 600
BstMWI GCNNNNNNNGC 6 cut(s) 67, 88, 97, 118, 295, 653
BstNI CCWGG 3 cut(s) 116, 286, 469
BstSCI CCNGG 5 cut(s) 95, 114, 284, 300, 467
BstSLI GKGCMC 1 cut(s) 1069
BstSNI TACGTA 1 cut(s) 550
BstUI CGCG 4 cut(s) 24, 26, 102, 121
BstV1I GCAGC 2 cut(s) 301, 858
BstV2I GAAGAC 1 cut(s) 965
BstZI CGGCCG 1 cut(s) 597
BsuRI GGCC 3 cut(s) 269, 361, 599
BtgZI GCGATG 1 cut(s) 388
BtsCI GGATG 5 cut(s) 315, 766, 799, 896, 974
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 6 cut(s) 72, 93, 121, 332, 413, 719
CfoI GCGC 8 cut(s) 7, 26, 63, 76, 84, 102, 121, 123
Cfr10I RCCGGY 2 cut(s) 37, 411
Cfr13I GGNCC 2 cut(s) 268, 535
Csp6I GTAC 6 cut(s) 28, 346, 544, 746, 811, 1193
CviAII CATG 3 cut(s) 161, 295, 559
CviQI GTAC 6 cut(s) 28, 346, 544, 746, 811, 1193
DdeI CTNAG 8 cut(s) 46, 127, 254, 495, 620, 627, 727, 934
DinI GGCGCC 2 cut(s) 6, 62
DpnI GATC 5 cut(s) 15, 44, 314, 711, 906
DpnII GATC 5 cut(s) 13, 42, 312, 709, 904
EaeI YGGCCR 1 cut(s) 597
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
EciI GGCGGA 2 cut(s) 8, 181
EclXI CGGCCG 1 cut(s) 597
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 2 cut(s) 204, 1048
Eco31I GGTCTC 2 cut(s) 28, 1128
Eco47I GGWCC 1 cut(s) 535
Eco52I CGGCCG 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 3 cut(s) 114, 284, 467
EcoT14I CCWWGG 2 cut(s) 204, 1048
EgeI GGCGCC 2 cut(s) 6, 62
EheI GGCGCC 2 cut(s) 6, 62
ErhI CCWWGG 2 cut(s) 204, 1048
Esp3I CGTCTC 2 cut(s) 471, 632
FaeI CATG 3 cut(s) 164, 298, 562
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 305
FatI CATG 3 cut(s) 160, 294, 558
FauI CCCGC 2 cut(s) 159, 710
FbaI TGATCA 1 cut(s) 709
Fnu4HI GCNGC 5 cut(s) 8, 22, 124, 290, 872
FokI GGATG 5 cut(s) 322, 773, 806, 883, 981
Fsp4HI GCNGC 5 cut(s) 8, 22, 124, 290, 872
GlaI GCGC 8 cut(s) 6, 25, 62, 75, 83, 101, 120, 122
GluI GCNGC 5 cut(s) 8, 22, 124, 290, 872
GsuI CTGGAG 3 cut(s) 98, 589, 759
HaeII RGCGCY 3 cut(s) 8, 64, 85
HaeIII GGCC 3 cut(s) 269, 361, 599
HapII CCGG 5 cut(s) 38, 97, 302, 412, 1196
HhaI GCGC 8 cut(s) 7, 26, 63, 76, 84, 102, 121, 123
Hin1I GRCGYC 5 cut(s) 5, 61, 105, 222, 318
Hin1II CATG 3 cut(s) 164, 298, 562
Hin6I GCGC 8 cut(s) 5, 24, 61, 74, 82, 100, 119, 121
HinP1I GCGC 8 cut(s) 5, 24, 61, 74, 82, 100, 119, 121
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 5 cut(s) 188, 200, 209, 215, 932
HpaII CCGG 5 cut(s) 38, 97, 302, 412, 1196
HphI GGTGA 3 cut(s) 890, 1004, 1155
Hpy188I TCNGA 9 cut(s) 49, 175, 199, 214, 220, 257, 394, 901, 1107
Hpy188III TCNNGA 3 cut(s) 527, 787, 966
Hpy99I CGWCG 6 cut(s) 107, 224, 227, 320, 398, 451
HpyAV CCTTC 5 cut(s) 245, 784, 949, 1024, 1169
HpyCH4III ACNGT 6 cut(s) 430, 440, 518, 707, 750, 951
HpyCH4IV ACGT 7 cut(s) 105, 222, 318, 348, 542, 549, 813
HpyCH4V TGCA 7 cut(s) 436, 594, 700, 804, 874, 961, 1079
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 88, 97, 118, 295, 653
HpyF3I CTNAG 8 cut(s) 46, 127, 254, 495, 620, 627, 727, 934
HpySE526I ACGT 7 cut(s) 105, 222, 318, 348, 542, 549, 813
Hsp92I GRCGYC 5 cut(s) 5, 61, 105, 222, 318
Hsp92II CATG 3 cut(s) 164, 298, 562
HspAI GCGC 8 cut(s) 5, 24, 61, 74, 82, 100, 119, 121
KasI GGCGCC 2 cut(s) 4, 60
KpnI GGTACC 1 cut(s) 749
KroI GCCGGC 1 cut(s) 411
KroNI GCCGGC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 5 cut(s) 13, 42, 312, 709, 904
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 7 cut(s) 117, 303, 398, 471, 661, 740, 868
Lsp1109I GCAGC 2 cut(s) 301, 858
LweI GCATC 2 cut(s) 365, 1160
MaeII ACGT 7 cut(s) 105, 222, 318, 348, 542, 549, 813
MaeIII GTNAC 3 cut(s) 575, 660, 889
MalI GATC 5 cut(s) 15, 44, 314, 711, 906
MbiI CCGCTC 2 cut(s) 494, 743
MboI GATC 5 cut(s) 13, 42, 312, 709, 904
MboII GAAGA 3 cut(s) 446, 965, 968
MhlI GDGCHC 1 cut(s) 1069
MluCI AATT 4 cut(s) 227, 552, 1134, 1159
Mly113I GGCGCC 2 cut(s) 5, 61
MlyI GAGTC 2 cut(s) 218, 926
MmeI TCCRAC 2 cut(s) 243, 417
MroNI GCCGGC 1 cut(s) 411
MseI TTAA 1 cut(s) 1004
MslI CAYNNNNRTG 1 cut(s) 705
MspA1I CMGCKG 1 cut(s) 717
MspI CCGG 5 cut(s) 38, 97, 302, 412, 1196
MspR9I CCNGG 5 cut(s) 97, 116, 286, 302, 469
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 3 cut(s) 116, 286, 469
MvnI CGCG 4 cut(s) 24, 26, 102, 121
MwoI GCNNNNNNNGC 6 cut(s) 67, 88, 97, 118, 295, 653
NaeI GCCGGC 1 cut(s) 413
NarI GGCGCC 2 cut(s) 5, 61
NciI CCSGG 2 cut(s) 97, 302
NdeII GATC 5 cut(s) 13, 42, 312, 709, 904
NgoMIV GCCGGC 1 cut(s) 411
NlaIII CATG 3 cut(s) 164, 298, 562
NmeAIII GCCGAG 3 cut(s) 89, 500, 625
NmuCI GTSAC 2 cut(s) 660, 889
NspV TTCGAA 1 cut(s) 248
PalAI GGCGCGCC 1 cut(s) 119
PauI GCGCGC 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 345, 390
PctI GAATGC 1 cut(s) 961
PdiI GCCGGC 1 cut(s) 413
PfeI GAWTC 3 cut(s) 188, 200, 215
PfoI TCCNGGA 2 cut(s) 300, 467
PkrI GCNGC 5 cut(s) 9, 23, 125, 291, 873
PleI GAGTC 2 cut(s) 217, 926
PluTI GGCGCC 2 cut(s) 8, 64
PpsI GAGTC 2 cut(s) 217, 926
Ppu21I YACGTR 2 cut(s) 349, 550
Psp6I CCWGG 3 cut(s) 114, 284, 467
PspGI CCWGG 3 cut(s) 114, 284, 467
PspPI GGNCC 2 cut(s) 268, 535
PteI GCGCGC 1 cut(s) 119
RsaI GTAC 6 cut(s) 29, 347, 545, 747, 812, 1194
RsaNI GTAC 6 cut(s) 28, 346, 544, 746, 811, 1193
RseI CAYNNNNRTG 1 cut(s) 705
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 1 cut(s) 1004
SatI GCNGC 5 cut(s) 8, 22, 124, 290, 872
Sau3AI GATC 5 cut(s) 13, 42, 312, 709, 904
Sau96I GGNCC 2 cut(s) 268, 535
SchI GAGTC 2 cut(s) 218, 926
ScrFI CCNGG 5 cut(s) 97, 116, 286, 302, 469
SduI GDGCHC 1 cut(s) 1069
SfaNI GCATC 2 cut(s) 365, 1160
SfoI GGCGCC 2 cut(s) 6, 62
SfuI TTCGAA 1 cut(s) 248
SgsI GGCGCGCC 1 cut(s) 119
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 1025
SmoI CTYRAG 1 cut(s) 1025
SnaBI TACGTA 1 cut(s) 550
Sse9I AATT 4 cut(s) 227, 552, 1134, 1159
SspDI GGCGCC 2 cut(s) 4, 60
StyD4I CCNGG 5 cut(s) 95, 114, 284, 300, 467
StyI CCWWGG 2 cut(s) 204, 1048
TaaI ACNGT 6 cut(s) 430, 440, 518, 707, 750, 951
TaiI ACGT 7 cut(s) 108, 225, 321, 351, 545, 552, 816
TaqI TCGA 5 cut(s) 225, 231, 248, 315, 588
TasI AATT 4 cut(s) 227, 552, 1134, 1159
TauI GCSGC 3 cut(s) 10, 24, 126
TfiI GAWTC 3 cut(s) 188, 200, 215
Tru1I TTAA 1 cut(s) 1004
Tru9I TTAA 1 cut(s) 1004
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 2 cut(s) 660, 889
TseI GCWGC 2 cut(s) 289, 871
Tsp45I GTSAC 2 cut(s) 660, 889
TspDTI ATGAA 3 cut(s) 177, 931, 1188
TspGWI ACGGA 3 cut(s) 278, 411, 648
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 1 cut(s) 227
ZraI GACGTC 3 cut(s) 106, 223, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.