Rorug06G0503500

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012054
Physical Location & Seq
Reverse (-)
61783391 .. 61783870
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0503500.1

Sequence Viewer

Length: 480 bp
ATGGCTCCCAAGAATCCCAAGAATTCATCTGTGAACAAGCTCCTTGCTGATAATAATGAGTATATAAAGTTGGCCATCAAGGCTACAAAATGTCATAAGCTCAAAAACAAGGTCTGGGAGCTTTCAGTCTTGTGCGATGTTATTGTCTCCTTGATTGTTATTGGACCTGATGGAAAAGTCTCGAAGGAAAACCTAGAAGAGGTGAAATCAATTATAAGGGAGTATTGGCTGAAAAAACGACTCCACCGCTCCGATCTCTTGGAAGTTGTTCTTGAAGAAATCAAGAAGAGGACTGTGGATATCGACTGCAACTGGGTGCCATCAGAGGAGTTAAGGGATATGTGGAATAGCTTGGAGTCCCAGCTAGAAGCTGTGATTGAGAAGACTAGTAGAGTGGTTAGGGATAAGGAGAATACTATTGGTGATATGAGAAAATCCATGCTGCAGATTGATCGATCATTCTTAGATTCATCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.39

Weight (kDa)

8.37

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 34 - 60 3.6e-07 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24880 AT4G24880
fragaria_vesca FvH4_5g08230 FvH4_5g08230 FvH4_5g08230 FvH4_5g08230
malus_domestica MD14G1157700.v1.1
prunus_persica Prupe.5G151700_v2.0.a1
pyrus_communis pycom14g13120
rosa_chinensis RchiOBHm_Chr7g0190291
rosa_laevigata RLG00000004546
rosa_multiflora Rmu_sc0005487.1_g000005
rosa_roxburghii Rroxscaffold_3G00264760
rosa_rugosa Rorug06G0503500
rosa_samantha Rh7AG109200 Rh7BG111600 Rh7CG114000 Rh7DG112200
rosa_wichuraiana Rw7G009470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 316
AccBSI CCGCTC 1 cut(s) 249
AciI CCGC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 275
AhlI ACTAGT 1 cut(s) 386
AluBI AGCT 6 cut(s) 40, 100, 121, 351, 364, 371
AluI AGCT 6 cut(s) 40, 100, 121, 351, 364, 371
Alw26I GTCTC 2 cut(s) 151, 184
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 214, 434
AvaII GGWCC 1 cut(s) 164
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 429
BccI CCATC 3 cut(s) 83, 164, 328
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BcoDI GTCTC 2 cut(s) 151, 184
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 3 cut(s) 194, 365, 387
BfmI CTRYAG 1 cut(s) 443
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 6, 318
BmrI ACTGGG 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 454
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 317
BseCI ATCGAT 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 360
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 454
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 151, 184
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 253, 451, 455
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 74
BspDI ATCGAT 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 6, 318
BspMAI CTGCAG 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 317
BssMI GATC 3 cut(s) 253, 451, 455
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 2 cut(s) 192, 281
BstDEI CTNAG 1 cut(s) 463
BstENI CCTNNNNNAGG 1 cut(s) 197
BstKTI GATC 3 cut(s) 256, 454, 458
BstMAI GTCTC 2 cut(s) 151, 184
BstMBI GATC 3 cut(s) 253, 451, 455
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 389
Bsu15I ATCGAT 1 cut(s) 454
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 454
BtgZI GCGATG 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 454
CviAII CATG 1 cut(s) 439
DdeI CTNAG 1 cut(s) 463
DpnI GATC 3 cut(s) 255, 453, 457
DpnII GATC 3 cut(s) 253, 451, 455
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 192, 281
EarI CTCTTC 2 cut(s) 192, 281
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 301
FaeI CATG 1 cut(s) 442
FaiI YATR 8 cut(s) 63, 65, 96, 215, 341, 428, 440, 478
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 3 cut(s) 194, 365, 387
GluI GCNGC 1 cut(s) 443
GsaI CCCAGC 1 cut(s) 364
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 1 cut(s) 442
HinfI GANTC 4 cut(s) 13, 240, 356, 467
HphI GGTGA 2 cut(s) 214, 434
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 253, 325
Hpy188III TCNNGA 3 cut(s) 181, 272, 283
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 309, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 463
Hsp92II CATG 1 cut(s) 442
Kzo9I GATC 3 cut(s) 253, 451, 455
LmnI GCTCC 4 cut(s) 10, 45, 118, 254
LpnPI CCDG 4 cut(s) 100, 180, 298, 374
Lsp1109I GCAGC 1 cut(s) 429
MaeI CTAG 3 cut(s) 194, 365, 387
MalI GATC 3 cut(s) 255, 453, 457
MbiI CCGCTC 1 cut(s) 249
MboI GATC 3 cut(s) 253, 451, 455
MboII GAAGA 4 cut(s) 209, 287, 298, 394
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 2 cut(s) 22, 210
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 2 cut(s) 234, 365
MnlI CCTC 3 cut(s) 193, 282, 319
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 253, 451, 455
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 2 cut(s) 6, 318
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 13, 467
PkrI GCNGC 1 cut(s) 444
PleI GAGTC 2 cut(s) 234, 364
PpsI GAGTC 2 cut(s) 234, 364
PsiI TTATAA 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 6, 318
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 447
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 3 cut(s) 253, 451, 455
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 2 cut(s) 234, 365
SfcI CTRYAG 1 cut(s) 443
SinI GGWCC 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 2 cut(s) 22, 210
SsiI CCGC 1 cut(s) 247
SspMI CTAG 3 cut(s) 194, 365, 387
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 3 cut(s) 182, 303, 454
TasI AATT 2 cut(s) 22, 210
TfiI GAWTC 2 cut(s) 13, 467
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseI GCWGC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 15, 459
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 194, 365, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.