RLG00000004546

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012054
Physical Location & Seq
Forward (+)
60174807 .. 60177548
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004546

Sequence Viewer

Length: 1008 bp
ATGGCACCCTCCGATCTCCGCCGTCCGTACAAACGGCCACAGCTCTCAGACCAGCAGAGGCGGAGAGAGCTTTCGCTTAAGCGCCAAGAACAGAGCCGCGACGCCGAGCTCCAAGCGCGGCGCTTAGCCTCCACGCTCCTTTCCCTCCCGCCCGAACAACAACCCTGGGAGCCCGAACTCGAACCCGAACCCAAACCCGGCTCCTCCACCGACTACGACCTCCGCGATGCTTCGAAGCTGAAAGGCCCGGCGGCGCGGAAGTGGTTCGCGAAGCAGCTCATGCTCCCGGAGTGGATGATCGACGTCCCTCATCGCCTCCCCCATGACTGGTATGTGCTTCCGAGGCCAGCAGGGAGGCGATGCTTCGTGGTCTCATCGGACGGAACGACGATCAGTAGGCAAAGAAACGGCACCGTTCTACACCGTTTCCCGTCAGCGCTGCCCCACGGGTCCCGGAACCGAGACGGATCGGGTCCTCCGTCGTATTCCATTCTCGACTGTATATTTCACGAGATGGACCAGACTTACTATGTGATTGACATGGTGTGCTGGAAGAATTACTCTTATTATAACTGCAGTACTGAATTTAGGTTTACTTGGTTGAAAGAGAAACTGGCTGAGACCAAAGCTTGTGATCCTCCATCGTATTATCATAAGTATAGGTTCAGCTTGGTTCCGTGGTCTCGCTGCGATCTGGCTGGTCTACACAAAGCCTATGCCGGAGAGGTGCCTTTCGTAAAGGATGGTATACTGTTTTATAACAAGCATGCACATTATCAACCGGGAAATACACCACTGGCGTTGGTGTGGAAGGATGAGCATTGCAGTCAGTATGTTATTGATACAGACAGCAAGGGACAGGTCCCAAGCCATCAGCAGGTAGTTTTGGAGCTGCAAGATGATGGGAAAGTGACTACATCAGATGATCCTCCAGTTGTGTTTAGTTGCTTAAATTTGGATTTTGTACAACAGGTATTGCTTATTGTTAACAAATTCTGTATATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.81

Weight (kDa)

8.28

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 92 - 267 2.6e-53 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24880 AT4G24880
fragaria_vesca FvH4_5g08230 FvH4_5g08230 FvH4_5g08230 FvH4_5g08230
malus_domestica MD14G1157700.v1.1
prunus_persica Prupe.5G151700_v2.0.a1
pyrus_communis pycom14g13120
rosa_chinensis RchiOBHm_Chr7g0190291
rosa_laevigata RLG00000004546
rosa_multiflora Rmu_sc0005487.1_g000005
rosa_roxburghii Rroxscaffold_3G00264760
rosa_rugosa Rorug06G0503500
rosa_samantha Rh7AG109200 Rh7BG111600 Rh7CG114000 Rh7DG112200
rosa_wichuraiana Rw7G009470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 570, 759
AatII GACGTC 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 868
AccB1I GGYRCC 3 cut(s) 4, 410, 727
AccI GTMKAC 2 cut(s) 703, 748
AccII CGCG 5 cut(s) 99, 118, 225, 256, 269
AciI CCGC 8 cut(s) 19, 61, 97, 118, 149, 223, 251, 256
AclWI GGATC 3 cut(s) 475, 629, 920
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 3 cut(s) 584, 952, 992
AcyI GRCGYC 2 cut(s) 102, 303
AfaI GTAC 3 cut(s) 29, 580, 966
AfeI AGCGCT 1 cut(s) 438
AfiI CCNNNNNNNGG 3 cut(s) 197, 327, 877
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 604
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 8 cut(s) 43, 70, 109, 238, 277, 629, 669, 892
AluI AGCT 8 cut(s) 43, 70, 109, 238, 277, 629, 669, 892
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 4 cut(s) 376, 456, 614, 687
AlwI GGATC 3 cut(s) 475, 629, 920
Aor51HI AGCGCT 1 cut(s) 438
AoxI GGCC 3 cut(s) 35, 244, 344
ApeKI GCWGC 4 cut(s) 274, 439, 687, 892
ApoI RAATTY 3 cut(s) 584, 952, 992
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 5 cut(s) 84, 118, 123, 256, 439
AspS9I GGNCC 5 cut(s) 245, 450, 473, 517, 862
AsuC2I CCSGG 5 cut(s) 198, 248, 287, 454, 783
AsuII TTCGAA 1 cut(s) 233
AvaII GGWCC 4 cut(s) 450, 473, 517, 862
BanI GGYRCC 3 cut(s) 4, 410, 727
BanII GRGCYC 2 cut(s) 111, 174
BauI CACGAG 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 4 cut(s) 286, 426, 674, 879
BccI CCATC 5 cut(s) 508, 649, 737, 879, 896
BceAI ACGGC 3 cut(s) 6, 50, 424
BciT130I CCWGG 1 cut(s) 166
BcnI CCSGG 5 cut(s) 198, 248, 287, 454, 783
BcoDI GTCTC 4 cut(s) 376, 456, 614, 687
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 3 cut(s) 85, 124, 440
BfrI CTTAAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 868
BisI GCNGC 7 cut(s) 97, 119, 252, 275, 440, 688, 893
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 7 cut(s) 98, 120, 253, 276, 441, 689, 894
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 6 cut(s) 166, 198, 248, 287, 454, 783
Bme18I GGWCC 4 cut(s) 450, 473, 517, 862
BmgT120I GGNCC 5 cut(s) 245, 450, 473, 517, 862
BmrFI CCNGG 6 cut(s) 166, 198, 248, 287, 454, 783
BmsI GCATC 2 cut(s) 217, 350
BpmI CTGGAG 1 cut(s) 915
Bpu1102I GCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 233
BpuMI CCSGG 5 cut(s) 198, 248, 287, 454, 783
BsaHI GRCGYC 2 cut(s) 102, 303
BsaI GGTCTC 3 cut(s) 376, 614, 687
BsaJI CCNNGG 5 cut(s) 164, 165, 341, 445, 677
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 327, 877
Bse1I ACTGG 4 cut(s) 332, 618, 801, 932
Bse3DI GCAATG 1 cut(s) 820
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 5 cut(s) 164, 165, 341, 445, 677
BseGI GGATG 3 cut(s) 300, 748, 820
BseLI CCNNNNNNNGG 3 cut(s) 197, 327, 877
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 2 cut(s) 60, 609
BseNI ACTGG 4 cut(s) 332, 618, 801, 932
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 4 cut(s) 286, 426, 674, 879
Bsh1236I CGCG 5 cut(s) 99, 118, 225, 256, 269
BshFI GGCC 3 cut(s) 37, 246, 346
BshNI GGYRCC 3 cut(s) 4, 410, 727
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 6 cut(s) 198, 248, 287, 454, 720, 782
BslFI GGGAC 4 cut(s) 290, 436, 848, 870
BslI CCNNNNNNNGG 3 cut(s) 197, 327, 877
BsmAI GTCTC 4 cut(s) 376, 456, 614, 687
BsmBI CGTCTC 1 cut(s) 456
BsmFI GGGAC 4 cut(s) 290, 436, 848, 870
BsnI GGCC 3 cut(s) 37, 246, 346
Bso31I GGTCTC 3 cut(s) 376, 614, 687
Bsp119I TTCGAA 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 111, 174
Bsp1407I TGTACA 1 cut(s) 964
Bsp143I GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
Bsp1720I GCTNAGC 1 cut(s) 124
Bsp68I TCGCGA 1 cut(s) 269
BspACI CCGC 8 cut(s) 19, 61, 97, 118, 149, 223, 251, 256
BspANI GGCC 3 cut(s) 37, 246, 346
BspCNI CTCAG 2 cut(s) 59, 610
BspFNI CGCG 5 cut(s) 99, 118, 225, 256, 269
BspMAI CTGCAG 1 cut(s) 578
BspMI ACCTGC 1 cut(s) 868
BspPI GGATC 3 cut(s) 475, 629, 920
BspT104I TTCGAA 1 cut(s) 233
BspT107I GGYRCC 3 cut(s) 4, 410, 727
BspTI CTTAAG 1 cut(s) 77
BspTNI GGTCTC 3 cut(s) 376, 614, 687
BsrDI GCAATG 1 cut(s) 820
BsrGI TGTACA 1 cut(s) 964
BsrI ACTGG 4 cut(s) 332, 618, 801, 932
BssECI CCNNGG 5 cut(s) 164, 165, 341, 445, 677
BssMI GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
BssNAI GTATAC 1 cut(s) 749
BssNI GRCGYC 2 cut(s) 102, 303
BssSI CACGAG 1 cut(s) 509
Bst1107I GTATAC 1 cut(s) 749
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 4 cut(s) 415, 425, 500, 753
BstACI GRCGYC 2 cut(s) 102, 303
BstAFI CTTAAG 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 964
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 348, 768
BstDEI CTNAG 3 cut(s) 46, 124, 618
BstDSI CCRYGG 2 cut(s) 445, 677
BstF5I GGATG 3 cut(s) 300, 748, 820
BstFNI CGCG 5 cut(s) 99, 118, 225, 256, 269
BstH2I RGCGCY 3 cut(s) 85, 124, 440
BstHHI GCGC 5 cut(s) 84, 118, 123, 256, 439
BstKTI GATC 7 cut(s) 16, 300, 393, 470, 637, 694, 928
BstMAI GTCTC 4 cut(s) 376, 456, 614, 687
BstMBI GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
BstMWI GCNNNNNNNGC 4 cut(s) 67, 115, 280, 343
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 6 cut(s) 164, 196, 246, 285, 452, 781
BstSFI CTRYAG 1 cut(s) 574
BstUI CGCG 5 cut(s) 99, 118, 225, 256, 269
BstV1I GCAGC 4 cut(s) 286, 426, 674, 879
BstZ17I GTATAC 1 cut(s) 749
BsuRI GGCC 3 cut(s) 37, 246, 346
BtgI CCRYGG 2 cut(s) 445, 677
BtgZI GCGATG 3 cut(s) 240, 296, 373
BtsCI GGATG 3 cut(s) 300, 748, 820
BtsIMutI CAGTG 1 cut(s) 794
BtuMI TCGCGA 1 cut(s) 269
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 2 cut(s) 348, 768
CfoI GCGC 5 cut(s) 84, 118, 123, 256, 439
Cfr13I GGNCC 5 cut(s) 245, 450, 473, 517, 862
CseI GACGC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 28, 579, 965
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviAII CATG 4 cut(s) 280, 323, 541, 767
CviQI GTAC 3 cut(s) 28, 579, 965
DdeI CTNAG 3 cut(s) 46, 124, 618
DpnI GATC 7 cut(s) 15, 299, 392, 469, 636, 693, 927
DpnII GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
EaeI YGGCCR 1 cut(s) 35
EciI GGCGGA 2 cut(s) 8, 76
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 111, 174
Eco31I GGTCTC 3 cut(s) 376, 614, 687
Eco47I GGWCC 4 cut(s) 450, 473, 517, 862
Eco47III AGCGCT 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 3 cut(s) 450, 473, 862
EcoRII CCWGG 1 cut(s) 164
EcoT38I GRGCYC 2 cut(s) 111, 174
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 4 cut(s) 283, 326, 544, 770
FaqI GGGAC 4 cut(s) 290, 436, 848, 870
FatI CATG 4 cut(s) 279, 322, 540, 766
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 2 cut(s) 703, 748
Fnu4HI GCNGC 7 cut(s) 97, 119, 252, 275, 440, 688, 893
FokI GGATG 3 cut(s) 307, 755, 827
FriOI GRGCYC 2 cut(s) 111, 174
Fsp4HI GCNGC 7 cut(s) 97, 119, 252, 275, 440, 688, 893
GlaI GCGC 5 cut(s) 83, 117, 122, 255, 438
GluI GCNGC 7 cut(s) 97, 119, 252, 275, 440, 688, 893
GsuI CTGGAG 1 cut(s) 915
HaeII RGCGCY 3 cut(s) 85, 124, 440
HaeIII GGCC 3 cut(s) 37, 246, 346
HapII CCGG 6 cut(s) 198, 248, 287, 454, 720, 782
HgaI GACGC 1 cut(s) 110
HhaI GCGC 5 cut(s) 84, 118, 123, 256, 439
Hin1I GRCGYC 2 cut(s) 102, 303
Hin1II CATG 4 cut(s) 283, 326, 544, 770
Hin6I GCGC 5 cut(s) 82, 116, 121, 254, 437
HinP1I GCGC 5 cut(s) 82, 116, 121, 254, 437
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 627
HpaI GTTAAC 1 cut(s) 988
HpaII CCGG 6 cut(s) 198, 248, 287, 454, 720, 782
Hpy166II GTNNAC 4 cut(s) 594, 704, 749, 988
Hpy188I TCNGA 5 cut(s) 13, 49, 342, 379, 922
Hpy188III TCNNGA 3 cut(s) 268, 494, 509
Hpy8I GTNNAC 4 cut(s) 594, 704, 749, 988
Hpy99I CGWCG 4 cut(s) 104, 305, 391, 484
HpyAV CCTTC 1 cut(s) 805
HpyCH4III ACNGT 4 cut(s) 415, 425, 500, 753
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 4 cut(s) 576, 770, 825, 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 115, 280, 343
HpyF3I CTNAG 3 cut(s) 46, 124, 618
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 2 cut(s) 102, 303
Hsp92II CATG 4 cut(s) 283, 326, 544, 770
HspAI GCGC 5 cut(s) 82, 116, 121, 254, 437
KflI GGGWCCC 1 cut(s) 450
KspAI GTTAAC 1 cut(s) 988
Kzo9I GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
LmnI GCTCC 6 cut(s) 114, 141, 169, 206, 288, 889
Lsp1109I GCAGC 4 cut(s) 286, 426, 674, 879
LweI GCATC 2 cut(s) 217, 350
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 910
MalI GATC 7 cut(s) 15, 299, 392, 469, 636, 693, 927
MboI GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
MboII GAAGA 1 cut(s) 565
MhlI GDGCHC 2 cut(s) 111, 174
MluCI AATT 4 cut(s) 556, 584, 952, 992
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 3 cut(s) 78, 950, 987
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 6 cut(s) 198, 248, 287, 454, 720, 782
MspR9I CCNGG 6 cut(s) 166, 198, 248, 287, 454, 783
MteI GCGCNGCGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 5 cut(s) 99, 118, 225, 256, 269
MwoI GCNNNNNNNGC 4 cut(s) 67, 115, 280, 343
NciI CCSGG 5 cut(s) 198, 248, 287, 454, 783
NdeII GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
NlaIII CATG 4 cut(s) 283, 326, 544, 770
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 910
NruI TCGCGA 1 cut(s) 269
NspI RCATGY 1 cut(s) 770
NspV TTCGAA 1 cut(s) 233
PaeI GCATGC 1 cut(s) 770
PasI CCCWGGG 1 cut(s) 165
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 383, 476
PdmI GAANNNNTTC 1 cut(s) 263
PfoI TCCNGGA 2 cut(s) 285, 452
PkrI GCNGC 7 cut(s) 98, 120, 253, 276, 441, 689, 894
PpuMI RGGWCCY 3 cut(s) 450, 473, 862
PsiI TTATAA 2 cut(s) 570, 759
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 3 cut(s) 450, 473, 862
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 5 cut(s) 245, 450, 473, 517, 862
PspPPI RGGWCCY 3 cut(s) 450, 473, 862
PstI CTGCAG 1 cut(s) 578
RruI TCGCGA 1 cut(s) 269
RsaI GTAC 3 cut(s) 29, 580, 966
RsaNI GTAC 3 cut(s) 28, 579, 965
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 78, 950, 987
SatI GCNGC 7 cut(s) 97, 119, 252, 275, 440, 688, 893
Sau3AI GATC 7 cut(s) 13, 297, 390, 467, 634, 691, 925
Sau96I GGNCC 5 cut(s) 245, 450, 473, 517, 862
ScaI AGTACT 1 cut(s) 580
ScrFI CCNGG 6 cut(s) 166, 198, 248, 287, 454, 783
SduI GDGCHC 2 cut(s) 111, 174
SfaNI GCATC 2 cut(s) 217, 350
SfcI CTRYAG 1 cut(s) 574
SfuI TTCGAA 1 cut(s) 233
SinI GGWCC 4 cut(s) 450, 473, 517, 862
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 770
Sse9I AATT 4 cut(s) 556, 584, 952, 992
SsiI CCGC 8 cut(s) 19, 61, 97, 118, 149, 223, 251, 256
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 6 cut(s) 164, 196, 246, 285, 452, 781
TaaI ACNGT 4 cut(s) 415, 425, 500, 753
TaiI ACGT 1 cut(s) 306
TaqI TCGA 4 cut(s) 180, 233, 300, 495
TasI AATT 4 cut(s) 556, 584, 952, 992
TatI WGTACW 2 cut(s) 578, 964
TauI GCSGC 3 cut(s) 99, 121, 254
Tru1I TTAA 3 cut(s) 78, 950, 987
Tru9I TTAA 3 cut(s) 78, 950, 987
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 4 cut(s) 274, 439, 687, 892
Tsp45I GTSAC 1 cut(s) 910
TspGWI ACGGA 5 cut(s) 15, 396, 468, 480, 666
TspRI CASTG 1 cut(s) 801
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 4 cut(s) 450, 473, 517, 862
XapI RAATTY 3 cut(s) 584, 952, 992
XceI RCATGY 1 cut(s) 770
XmiI GTMKAC 2 cut(s) 703, 748
XmnI GAANNNNTTC 1 cut(s) 263
ZraI GACGTC 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.