Upstream activation factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26810 AT4G26810 |
| fragaria_vesca | FvH4_3g23500 |
| malus_domestica | MD03G1193900.v1.1 |
| prunus_persica | Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 |
| pyrus_communis | pycom03g14630 |
| rosa_chinensis | RchiOBHm_Chr5g0041331 |
| rosa_multiflora | Rmu_sc0000594.1_g000073 |
| rosa_roxburghii | Rroxscaffold_1G00039300 |
| rosa_rugosa | Rorug05G0191500 |
| rosa_samantha | Rh5AG277800 Rh5BG282300 Rh5CG314700 Rh5DG291100 |
| rosa_wichuraiana | Rw5G026130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 170, 183 |
| AcsI | RAATTY | 3 cut(s) | 55, 304, 315 |
| AcuI | CTGAAG | 1 cut(s) | 155 |
| AgsI | TTSAA | 1 cut(s) | 19 |
| AluBI | AGCT | 3 cut(s) | 49, 214, 250 |
| AluI | AGCT | 3 cut(s) | 49, 214, 250 |
| AlwI | GGATC | 2 cut(s) | 170, 183 |
| Ama87I | CYCGRG | 1 cut(s) | 230 |
| ApeKI | GCWGC | 2 cut(s) | 4, 238 |
| ApoI | RAATTY | 3 cut(s) | 55, 304, 315 |
| AspS9I | GGNCC | 1 cut(s) | 147 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 230 |
| AvaII | GGWCC | 1 cut(s) | 147 |
| BamHI | GGATCC | 1 cut(s) | 175 |
| BauI | CACGAG | 1 cut(s) | 68 |
| BbvI | GCAGC | 1 cut(s) | 250 |
| BccI | CCATC | 1 cut(s) | 88 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 211, 245 |
| BfaI | CTAG | 1 cut(s) | 251 |
| BisI | GCNGC | 2 cut(s) | 5, 239 |
| BlsI | GCNGC | 2 cut(s) | 6, 240 |
| Bme18I | GGWCC | 1 cut(s) | 147 |
| BmeT110I | CYCGRG | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 1 cut(s) | 147 |
| BmiI | GGNNCC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 1 cut(s) | 200 |
| BseMII | CTCAG | 1 cut(s) | 125 |
| BseXI | GCAGC | 1 cut(s) | 250 |
| BsiHKCI | CYCGRG | 1 cut(s) | 230 |
| BsoBI | CYCGRG | 1 cut(s) | 230 |
| Bsp143I | GATC | 2 cut(s) | 175, 256 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BspLI | GGNNCC | 1 cut(s) | 177 |
| BspPI | GGATC | 2 cut(s) | 170, 183 |
| BssMI | GATC | 2 cut(s) | 175, 256 |
| BssSI | CACGAG | 1 cut(s) | 68 |
| Bst2BI | CACGAG | 1 cut(s) | 68 |
| BstDEI | CTNAG | 3 cut(s) | 111, 180, 309 |
| BstKTI | GATC | 2 cut(s) | 178, 259 |
| BstMBI | GATC | 2 cut(s) | 175, 256 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 235, 247 |
| BstV1I | GCAGC | 1 cut(s) | 250 |
| BstX2I | RGATCY | 1 cut(s) | 175 |
| BstYI | RGATCY | 1 cut(s) | 175 |
| Cfr13I | GGNCC | 1 cut(s) | 147 |
| CviAII | CATG | 1 cut(s) | 136 |
| CviJI | RGCY | 4 cut(s) | 26, 49, 214, 250 |
| CviKI_1 | RGCY | 4 cut(s) | 26, 49, 214, 250 |
| DdeI | CTNAG | 3 cut(s) | 111, 180, 309 |
| DpnI | GATC | 2 cut(s) | 177, 258 |
| DpnII | GATC | 2 cut(s) | 175, 256 |
| Eco47I | GGWCC | 1 cut(s) | 147 |
| Eco57I | CTGAAG | 1 cut(s) | 155 |
| Eco88I | CYCGRG | 1 cut(s) | 230 |
| EcoRI | GAATTC | 1 cut(s) | 304 |
| FaeI | CATG | 1 cut(s) | 139 |
| FaiI | YATR | 3 cut(s) | 29, 137, 153 |
| FatI | CATG | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 239 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 239 |
| FspBI | CTAG | 1 cut(s) | 251 |
| GluI | GCNGC | 2 cut(s) | 5, 239 |
| Hin1II | CATG | 1 cut(s) | 139 |
| HindIII | AAGCTT | 1 cut(s) | 47 |
| HinfI | GANTC | 1 cut(s) | 73 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 2 cut(s) | 114, 312 |
| Hpy188III | TCNNGA | 5 cut(s) | 70, 157, 173, 217, 232 |
| HpyAV | CCTTC | 2 cut(s) | 16, 273 |
| HpyCH4V | TGCA | 1 cut(s) | 280 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 235, 247 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 180, 309 |
| Hsp92II | CATG | 1 cut(s) | 139 |
| Kzo9I | GATC | 2 cut(s) | 175, 256 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| LpnPI | CCDG | 4 cut(s) | 23, 110, 130, 158 |
| Lsp1109I | GCAGC | 1 cut(s) | 250 |
| MaeI | CTAG | 1 cut(s) | 251 |
| MalI | GATC | 2 cut(s) | 177, 258 |
| MboI | GATC | 2 cut(s) | 175, 256 |
| MboII | GAAGA | 5 cut(s) | 31, 68, 161, 251, 313 |
| MflI | RGATCY | 1 cut(s) | 175 |
| MluCI | AATT | 3 cut(s) | 55, 304, 315 |
| MnlI | CCTC | 2 cut(s) | 6, 77 |
| MseI | TTAA | 1 cut(s) | 319 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 235, 247 |
| NdeII | GATC | 2 cut(s) | 175, 256 |
| NlaIII | CATG | 1 cut(s) | 139 |
| NlaIV | GGNNCC | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 73 |
| PkrI | GCNGC | 2 cut(s) | 6, 240 |
| PspN4I | GGNNCC | 1 cut(s) | 177 |
| PspPI | GGNCC | 1 cut(s) | 147 |
| PsuI | RGATCY | 1 cut(s) | 175 |
| SaqAI | TTAA | 1 cut(s) | 319 |
| SatI | GCNGC | 2 cut(s) | 5, 239 |
| Sau3AI | GATC | 2 cut(s) | 175, 256 |
| Sau96I | GGNCC | 1 cut(s) | 147 |
| SetI | ASST | 5 cut(s) | 17, 51, 69, 216, 252 |
| SinI | GGWCC | 1 cut(s) | 147 |
| SmlI | CTYRAG | 1 cut(s) | 215 |
| SmoI | CTYRAG | 1 cut(s) | 215 |
| Sse9I | AATT | 3 cut(s) | 55, 304, 315 |
| SspMI | CTAG | 1 cut(s) | 251 |
| TaqI | TCGA | 1 cut(s) | 255 |
| TasI | AATT | 3 cut(s) | 55, 304, 315 |
| TfiI | GAWTC | 1 cut(s) | 73 |
| Tru1I | TTAA | 1 cut(s) | 319 |
| Tru9I | TTAA | 1 cut(s) | 319 |
| TseI | GCWGC | 2 cut(s) | 4, 238 |
| TspDTI | ATGAA | 1 cut(s) | 124 |
| TspGWI | ACGGA | 2 cut(s) | 47, 106 |
| VpaK11BI | GGWCC | 1 cut(s) | 147 |
| XapI | RAATTY | 3 cut(s) | 55, 304, 315 |
| XspI | CTAG | 1 cut(s) | 251 |