Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011919

Physical Location & Seq

Genomic Coordinates Reverse (-)

16552698 .. 16556948

Gene Structure 4251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTGCCACAGGGGATTAAGAAAGCCGTGACGGATAATCCAAAGAAACTAGCCAACTTGATTGACCTGGTGAATCTTCCTTCTACACTGAGAGAGTTTGTGGGTCAGTCTCAGATTTCCCGGCTTGGATGTTTCGTGCGTGTCTGGTCGTACATCAAGGACAACAATCTCCAGGATCCAAACAACAAAAATGTGGTCAACTGTGATGAGAAGTTGAAGAGTATTTTGTTGGGCAAGCCTCAAGTTGAGTTAGCTGAGCTGCCTGCATTGATCAAGCTTCATTTCCCCAAAGAGGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

101

Amino Acids

11.25

Weight (kDa)

9.39

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	24 - 95	8.4e-23	SWIB/MDM2 domain
SWIB_eIF2D	PF26291	48 - 86	2.7e-07	eIF2D, SWIB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26810 AT4G26810
fragaria_vesca	FvH4_3g23500
malus_domestica	MD03G1193900.v1.1
prunus_persica	Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1
pyrus_communis	pycom03g14630
rosa_chinensis	RchiOBHm_Chr5g0041331
rosa_multiflora	Rmu_sc0000594.1_g000073
rosa_roxburghii	Rroxscaffold_1G00039300
rosa_rugosa	Rorug05G0191500
rosa_samantha	Rh5AG277800 Rh5BG282300 Rh5CG314700 Rh5DG291100
rosa_wichuraiana	Rw5G026130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	170, 183
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	66, 171
AluBI	AGCT	3 cut(s)	254, 259, 277
AluI	AGCT	3 cut(s)	254, 259, 277
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	170, 183
ApeKI	GCWGC	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	11
BciT130I	CCWGG	2 cut(s)	68, 173
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	260
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	261
Bme1390I	CCNGG	3 cut(s)	68, 121, 173
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	3 cut(s)	68, 121, 173
BpmI	CTGGAG	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	68, 173
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	3 cut(s)	80, 125, 246
BseXI	GCAGC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	175, 270
Bsp1720I	GCTNAGC	1 cut(s)	255
BspCNI	CTCAG	3 cut(s)	81, 124, 247
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	170, 183
BssMI	GATC	2 cut(s)	175, 270
Bst2UI	CCWGG	2 cut(s)	68, 173
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	236, 264
BstDEI	CTNAG	3 cut(s)	89, 111, 255
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	178, 273
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	175, 270
BstNI	CCWGG	2 cut(s)	68, 173
BstSCI	CCNGG	3 cut(s)	66, 119, 171
BstV1I	GCAGC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	236, 264
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	8 cut(s)	26, 53, 124, 238, 254, 259, 277, 296
CviKI_1	RGCY	8 cut(s)	26, 53, 124, 238, 254, 259, 277, 296
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	89, 111, 255
DpnI	GATC	2 cut(s)	177, 272
DpnII	GATC	2 cut(s)	175, 270
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	66, 171
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	155
HapII	CCGG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	89, 111, 255
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	175, 270
LpnPI	CCDG	7 cut(s)	53, 80, 130, 134, 158, 185, 276
Lsp1109I	GCAGC	1 cut(s)	246
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	177, 272
MboI	GATC	2 cut(s)	175, 270
MboII	GAAGA	2 cut(s)	68, 229
MflI	RGATCY	1 cut(s)	175
MnlI	CCTC	2 cut(s)	249, 286
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	68, 121, 173
MvaI	CCWGG	2 cut(s)	68, 173
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	175, 270
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	66, 171
PspGI	CCWGG	2 cut(s)	66, 171
PspN4I	GGNNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	2 cut(s)	175, 270
ScrFI	CCNGG	3 cut(s)	68, 121, 173
SetI	ASST	4 cut(s)	69, 256, 261, 279
SexAI	ACCWGGT	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	66, 119, 171
TaaI	ACNGT	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	93
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.