Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011919

Physical Location & Seq

Genomic Coordinates Reverse (-)

15950570 .. 15951137

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTGCCGCCGATGATGAAGAAGGCCATTACAGATAACCCAAAGAAGCTGGCCAACTTGATCGACCTCGTAAATCTTCCTTCTACACTGCGAGAGTTCACGGGTCAGTCTCAGATTTCTCGTCTTGGATGTTTCATGCGTGTCTGGTCATACATCAAGGACAACAATCTCCAGGATCCGAACAACAAGAATGTGGTCAATTGTGACGAAAAGTTGAAGAGCGTTCTGTTGGGCAAGCCTCAAGTTGAGTTATCTGAACTTCCTACACTGATCAAGCTCCATTTCCCCAAAGAGCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

101

Amino Acids

11.42

Weight (kDa)

9.39

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	24 - 95	1.9e-23	SWIB/MDM2 domain
SWIB_eIF2D	PF26291	48 - 87	3.4e-07	eIF2D, SWIB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26810 AT4G26810
fragaria_vesca	FvH4_3g23500
malus_domestica	MD03G1193900.v1.1
prunus_persica	Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1
pyrus_communis	pycom03g14630
rosa_chinensis	RchiOBHm_Chr5g0041331
rosa_multiflora	Rmu_sc0000594.1_g000073
rosa_roxburghii	Rroxscaffold_1G00039300
rosa_rugosa	Rorug05G0191500
rosa_samantha	Rh5AG277800 Rh5BG282300 Rh5CG314700 Rh5DG291100
rosa_wichuraiana	Rw5G026130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	170, 183
AcoI	YGGCCR	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	49, 277
AluI	AGCT	2 cut(s)	49, 277
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	170, 183
AoxI	GGCC	2 cut(s)	24, 51
BalI	TGGCCA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	26, 53
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	26, 53
Bsp143I	GATC	3 cut(s)	60, 175, 270
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	26, 53
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	170, 183
BspQI	GCTCTTC	1 cut(s)	212
BssMI	GATC	3 cut(s)	60, 175, 270
Bst2UI	CCWGG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	51, 236
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	3 cut(s)	63, 178, 273
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	60, 175, 270
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	26, 53
BtsCI	GGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	86, 266
Cac8I	GCNNGC	2 cut(s)	51, 236
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	6 cut(s)	26, 49, 53, 238, 277, 295
CviKI_1	RGCY	6 cut(s)	26, 49, 53, 238, 277, 295
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	3 cut(s)	62, 177, 272
DpnII	GATC	3 cut(s)	60, 175, 270
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	137, 151
FatI	CATG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	26, 53
Hin1II	CATG	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	114, 180, 256
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	16, 90
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	60, 175, 270
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	4 cut(s)	35, 130, 158, 185
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	62, 177, 272
MboI	GATC	3 cut(s)	60, 175, 270
MboII	GAAGA	3 cut(s)	31, 68, 229
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	199
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	2 cut(s)	77, 249
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	173
NdeII	GATC	3 cut(s)	60, 175, 270
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	60, 175, 270
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	3 cut(s)	51, 69, 279
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	171
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	199
TauI	GCSGC	1 cut(s)	10
TscAI	CASTG	2 cut(s)	93, 273
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	32, 124
TspRI	CASTG	2 cut(s)	93, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.