Upstream activation factor subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G26810 AT4G26810 |
| fragaria_vesca | FvH4_3g23500 |
| malus_domestica | MD03G1193900.v1.1 |
| prunus_persica | Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 Prupe.4G222800_v2.0.a1 |
| pyrus_communis | pycom03g14630 |
| rosa_chinensis | RchiOBHm_Chr5g0041331 |
| rosa_multiflora | Rmu_sc0000594.1_g000073 |
| rosa_roxburghii | Rroxscaffold_1G00039300 |
| rosa_rugosa | Rorug05G0191500 |
| rosa_samantha | Rh5AG277800 Rh5BG282300 Rh5CG314700 Rh5DG291100 |
| rosa_wichuraiana | Rw5G026130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 91 |
| AclWI | GGATC | 2 cut(s) | 170, 183 |
| AcoI | YGGCCR | 1 cut(s) | 51 |
| AgsI | TTSAA | 2 cut(s) | 19, 217 |
| AluBI | AGCT | 3 cut(s) | 49, 259, 277 |
| AluI | AGCT | 3 cut(s) | 49, 259, 277 |
| Alw26I | GTCTC | 1 cut(s) | 114 |
| AlwI | GGATC | 2 cut(s) | 170, 183 |
| AoxI | GGCC | 2 cut(s) | 24, 51 |
| ApeKI | GCWGC | 1 cut(s) | 88 |
| AspLEI | GCGC | 1 cut(s) | 268 |
| AxyI | CCTNAGG | 1 cut(s) | 240 |
| BalI | TGGCCA | 1 cut(s) | 53 |
| BamHI | GGATCC | 1 cut(s) | 175 |
| BbvI | GCAGC | 1 cut(s) | 75 |
| BccI | CCATC | 1 cut(s) | 35 |
| BclI | TGATCA | 1 cut(s) | 270 |
| BcoDI | GTCTC | 1 cut(s) | 114 |
| BisI | GCNGC | 1 cut(s) | 89 |
| BlsI | GCNGC | 1 cut(s) | 90 |
| BmiI | GGNNCC | 1 cut(s) | 177 |
| BmsI | GCATC | 1 cut(s) | 119 |
| BsaJI | CCNNGG | 1 cut(s) | 11 |
| Bse21I | CCTNAGG | 1 cut(s) | 240 |
| BseDI | CCNNGG | 1 cut(s) | 11 |
| BseGI | GGATG | 1 cut(s) | 134 |
| BseMII | CTCAG | 2 cut(s) | 125, 254 |
| BseXI | GCAGC | 1 cut(s) | 75 |
| BshFI | GGCC | 2 cut(s) | 26, 53 |
| BsmAI | GTCTC | 1 cut(s) | 114 |
| BsnI | GGCC | 2 cut(s) | 26, 53 |
| Bsp143I | GATC | 2 cut(s) | 175, 270 |
| BspACI | CCGC | 1 cut(s) | 91 |
| BspANI | GGCC | 2 cut(s) | 26, 53 |
| BspCNI | CTCAG | 2 cut(s) | 124, 253 |
| BspLI | GGNNCC | 1 cut(s) | 177 |
| BspPI | GGATC | 2 cut(s) | 170, 183 |
| BssECI | CCNNGG | 1 cut(s) | 11 |
| BssMI | GATC | 2 cut(s) | 175, 270 |
| BssT1I | CCWWGG | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 2 cut(s) | 51, 236 |
| BstDEI | CTNAG | 2 cut(s) | 111, 240 |
| BstF5I | GGATG | 1 cut(s) | 134 |
| BstHHI | GCGC | 1 cut(s) | 268 |
| BstKTI | GATC | 2 cut(s) | 178, 273 |
| BstMAI | GTCTC | 1 cut(s) | 114 |
| BstMBI | GATC | 2 cut(s) | 175, 270 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 274 |
| BstV1I | GCAGC | 1 cut(s) | 75 |
| BstX2I | RGATCY | 1 cut(s) | 175 |
| BstYI | RGATCY | 1 cut(s) | 175 |
| Bsu36I | CCTNAGG | 1 cut(s) | 240 |
| BsuRI | GGCC | 2 cut(s) | 26, 53 |
| BtsCI | GGATG | 1 cut(s) | 134 |
| Cac8I | GCNNGC | 2 cut(s) | 51, 236 |
| CfoI | GCGC | 1 cut(s) | 268 |
| CseI | GACGC | 1 cut(s) | 94 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 32 |
| CviAII | CATG | 1 cut(s) | 136 |
| CviJI | RGCY | 6 cut(s) | 26, 49, 53, 238, 259, 277 |
| CviKI_1 | RGCY | 6 cut(s) | 26, 49, 53, 238, 259, 277 |
| DdeI | CTNAG | 2 cut(s) | 111, 240 |
| DpnI | GATC | 2 cut(s) | 177, 272 |
| DpnII | GATC | 2 cut(s) | 175, 270 |
| EaeI | YGGCCR | 1 cut(s) | 51 |
| Eco130I | CCWWGG | 1 cut(s) | 11 |
| Eco81I | CCTNAGG | 1 cut(s) | 240 |
| EcoT14I | CCWWGG | 1 cut(s) | 11 |
| ErhI | CCWWGG | 1 cut(s) | 11 |
| FaeI | CATG | 1 cut(s) | 139 |
| FaiI | YATR | 3 cut(s) | 137, 151, 253 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 266, 298 |
| FatI | CATG | 1 cut(s) | 135 |
| FauI | CCCGC | 1 cut(s) | 84 |
| FbaI | TGATCA | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 1 cut(s) | 89 |
| FokI | GGATG | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 1 cut(s) | 89 |
| GlaI | GCGC | 1 cut(s) | 267 |
| GluI | GCNGC | 1 cut(s) | 89 |
| HaeIII | GGCC | 2 cut(s) | 26, 53 |
| HgaI | GACGC | 1 cut(s) | 94 |
| HhaI | GCGC | 1 cut(s) | 268 |
| Hin1II | CATG | 1 cut(s) | 139 |
| Hin6I | GCGC | 1 cut(s) | 266 |
| HinP1I | GCGC | 1 cut(s) | 266 |
| Hpy188I | TCNGA | 1 cut(s) | 114 |
| Hpy99I | CGWCG | 1 cut(s) | 88 |
| HpyAV | CCTTC | 3 cut(s) | 16, 90, 211 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 274 |
| HpyF3I | CTNAG | 2 cut(s) | 111, 240 |
| Hsp92II | CATG | 1 cut(s) | 139 |
| HspAI | GCGC | 1 cut(s) | 266 |
| Ksp22I | TGATCA | 1 cut(s) | 270 |
| Kzo9I | GATC | 2 cut(s) | 175, 270 |
| LmnI | GCTCC | 1 cut(s) | 282 |
| LpnPI | CCDG | 5 cut(s) | 35, 130, 158, 227, 276 |
| Lsp1109I | GCAGC | 1 cut(s) | 75 |
| LweI | GCATC | 1 cut(s) | 119 |
| MalI | GATC | 2 cut(s) | 177, 272 |
| MboI | GATC | 2 cut(s) | 175, 270 |
| MboII | GAAGA | 2 cut(s) | 31, 68 |
| MflI | RGATCY | 1 cut(s) | 175 |
| MlsI | TGGCCA | 1 cut(s) | 53 |
| MluCI | AATT | 1 cut(s) | 166 |
| MluNI | TGGCCA | 1 cut(s) | 53 |
| MnlI | CCTC | 2 cut(s) | 77, 249 |
| Mox20I | TGGCCA | 1 cut(s) | 53 |
| MscI | TGGCCA | 1 cut(s) | 53 |
| Msp20I | TGGCCA | 1 cut(s) | 53 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 274 |
| NdeII | GATC | 2 cut(s) | 175, 270 |
| NlaIII | CATG | 1 cut(s) | 139 |
| NlaIV | GGNNCC | 1 cut(s) | 177 |
| PkrI | GCNGC | 1 cut(s) | 90 |
| PspN4I | GGNNCC | 1 cut(s) | 177 |
| PsuI | RGATCY | 1 cut(s) | 175 |
| SatI | GCNGC | 1 cut(s) | 89 |
| Sau3AI | GATC | 2 cut(s) | 175, 270 |
| SetI | ASST | 6 cut(s) | 17, 51, 69, 246, 261, 279 |
| SfaNI | GCATC | 1 cut(s) | 119 |
| Sse9I | AATT | 1 cut(s) | 166 |
| SsiI | CCGC | 1 cut(s) | 91 |
| StyI | CCWWGG | 1 cut(s) | 11 |
| TaqI | TCGA | 1 cut(s) | 83 |
| TasI | AATT | 1 cut(s) | 166 |
| TseI | GCWGC | 1 cut(s) | 88 |
| TspDTI | ATGAA | 2 cut(s) | 124, 222 |