AT4G26830

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012393
Physical Location & Seq
Reverse (-)
13494572 .. 13496738
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26830.2

Sequence Viewer

Length: 1368 bp
ATGGCCGTTTCTTTCTTACCTTATTTTCTGATTCTTTCCTTCCTCTCAGCCATTGACGCACATTCTGGAATGGTCGGAGTCAATTATGGTCGGATAGCTAACAATCTCCCGTCGCCGGAGAAAGTAGTGAACCTCCTGAAATCTCAAGGAATCAACCGTATCAAAATCTTCGACACCGATAAGAATGTACTAACCGCACTTGCAAATTCCAAAATCAAAGTAATCGTCGCTCTCCCTAACGAGCTTCTCTCCTCCGCCGCCTCCCACCAATCATTCGCCGACAACTGGATTAAAACCCACATAATGCCATACTTCCCAGCGACGGAGATCGAAGCTATCGCCGTCGGTAACGAAGTATTCGTCGATCCGACGATCACGCCGTATCTTGTCAATGCGATGAAGAACATTCACACCTCTCTGGTTAAGTATAAACTCGACAAAGCCATCAAGATCTCGTCTCCTATTGCTCTTAGCGCGCTTGCTAATTCGTACCCGCCTTCCTCTGGTTCTTTTAAACCGGAATTAATCGAACCGGTTGTTAAACCAATGCTTGCTCTGCTTCAACAAACGTCGTCGTATCTTATGGTAAATGCTTATCCGTTTTTCGCTTACGCAGCAAACGCCGATAAAATCTCTTTAGACTACGCTCTGTTTAAAGAAAACGCCGGGAATATAGATTCCGGTACCGGATTGAAGTACAACAGTCTCTTTGACGCTCAAATAGACGCCGTTTACGCGGCATTGTCCGCCGTCGGATTTAAAGGCGTTAAGGTGATGGTGACGGAAACAGGGTGGCCTTCCGTTGGAGATGAGAATGAGATTGGTGCAAGCGAATCTAACGCGGCGGCGTATAACGCCGGACTTGTGAAGAGAGTGTTAACGGGTAAAGGAACACCGTTAAGACCGACGGAGCCACTTAACGTCTATTTATTCGCTTTATTCAACGAAAACCAGAAACCGGGGCCAACGTCTGAGAGAAACTACGGTTTGTTTTACCCAAACGAAGGGAAAGTGTACAACGTTCCGTTCACTAAAAAGTCAACGACGCCGGTCAACGGTAACAGAGGTAAAGTTCCGGTGACGCACGAGGGACATACATGGTGCGTTTCGAACGGAGAGGTAGCGAAGGAGAAACTTCAGGAGGCTCTTGATTACGCTTGCGGAGAAGGAGGAGCTGATTGCCGCCCGATTCAGCCAGGTGCCACGTGTTATCATCCTGAGTCGTTAGAAGCTCACGCTTCGTACGCCTTCAATAGTTACTACCAGAAGAACTCACGTCGTGTTGGTACGTGCTTCTTTGGTGGAGCTGCTCACGTCGTCACGCAACCTCCTCGATATGGAAAATGCGAGTTTCCCACCGGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

455

Amino Acids

49.35

Weight (kDa)

8.04

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 2.3e-90 Glycosyl hydrolases family 17
X8 PF07983 370 - 441 1.3e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26830 AT4G26830 AT5G55180 AT5G55180
fragaria_vesca FvH4_3g23410 FvH4_3g23410
malus_domestica MD03G1194600.v1.1 MD11G1210800.v1.1
prunus_persica Prupe.4G222100_v2.0.a1
pyrus_communis pycom03g14670 pycom11g18630
rosa_chinensis RchiOBHm_Chr5g0041211
rosa_laevigata RLG00000034037
rosa_multiflora Rmu_sc0003502.1_g000013
rosa_roxburghii Rroxscaffold_1G00039410
rosa_rugosa Rorug05G0190600
rosa_samantha Rh5BG281600 Rh5CG313600
rosa_wichuraiana Rw5G026020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 683
AccB1I GGYRCC 2 cut(s) 683, 1199
AccII CGCG 3 cut(s) 476, 737, 842
AclI AACGTT 1 cut(s) 1020
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 1121
AcvI CACGTG 1 cut(s) 1206
AcyI GRCGYC 2 cut(s) 726, 1046
AdeI CACNNNGTG 1 cut(s) 1280
AfaI GTAC 7 cut(s) 189, 491, 685, 698, 1016, 1244, 1288
AfiI CCNNNNNNNGG 9 cut(s) 115, 285, 322, 503, 803, 958, 1004, 1055, 1337
AflIII ACRYGT 1 cut(s) 1205
AgeI ACCGGT 1 cut(s) 532
AgsI TTSAA 4 cut(s) 563, 694, 943, 1252
AjiI CACGTC 2 cut(s) 1277, 1315
AjnI CCWGG 1 cut(s) 1195
AluBI AGCT 6 cut(s) 98, 244, 335, 1175, 1232, 1307
AluI AGCT 6 cut(s) 98, 244, 335, 1175, 1232, 1307
Alw26I GTCTC 2 cut(s) 462, 710
AlwI GGATC 1 cut(s) 359
AoxI GGCC 3 cut(s) 3, 794, 962
ApeKI GCWGC 2 cut(s) 614, 1307
ApoI RAATTY 1 cut(s) 205
ArsI GACNNNNNNTTYG 4 cut(s) 210, 242, 345, 377
AseI ATTAAT 1 cut(s) 524
AsiGI ACCGGT 1 cut(s) 532
Asp718I GGTACC 1 cut(s) 683
AspLEI GCGC 2 cut(s) 476, 478
AspS9I GGNCC 1 cut(s) 962
AsuC2I CCSGG 2 cut(s) 667, 960
AsuHPI GGTGA 3 cut(s) 784, 790, 1090
AsuII TTCGAA 1 cut(s) 1109
BanI GGYRCC 2 cut(s) 683, 1199
BauI CACGAG 1 cut(s) 1085
BbrPI CACGTG 1 cut(s) 1206
BbvI GCAGC 2 cut(s) 626, 1294
BccI CCATC 2 cut(s) 452, 769
BceAI ACGGC 4 cut(s) 326, 364, 713, 734
BcgI CGANNNNNNTGC 2 cut(s) 1313, 1347
BciT130I CCWGG 1 cut(s) 1197
BcnI CCSGG 2 cut(s) 667, 960
BcoDI GTCTC 2 cut(s) 462, 710
BglII AGATCT 1 cut(s) 450
BisI GCNGC 7 cut(s) 258, 615, 738, 843, 846, 1183, 1308
BlsI GCNGC 7 cut(s) 259, 616, 739, 844, 847, 1184, 1309
Bme1390I CCNGG 3 cut(s) 667, 960, 1197
BmgBI CACGTC 2 cut(s) 1277, 1315
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 4 cut(s) 685, 912, 963, 1201
BmrFI CCNGG 3 cut(s) 667, 960, 1197
BoxI GACNNNNGTC 1 cut(s) 1049
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu14I TTCGAA 1 cut(s) 1109
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 2 cut(s) 667, 960
BsaAI YACGTR 2 cut(s) 1206, 1290
BsaHI GRCGYC 2 cut(s) 726, 1046
BsaJI CCNNGG 1 cut(s) 959
BsaWI WCCGGW 6 cut(s) 517, 532, 680, 686, 1075, 1358
BsaXI ACNNNNNCTCC 2 cut(s) 1312, 1342
Bsc4I CCNNNNNNNGG 9 cut(s) 115, 285, 322, 503, 803, 958, 1004, 1055, 1337
Bse118I RCCGGY 2 cut(s) 532, 1048
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 1197
BseDI CCNNGG 1 cut(s) 959
BseGI GGATG 1 cut(s) 1213
BseLI CCNNNNNNNGG 9 cut(s) 115, 285, 322, 503, 803, 958, 1004, 1055, 1337
BseMII CTCAG 3 cut(s) 60, 963, 1209
BseNI ACTGG 1 cut(s) 290
BsePI GCGCGC 1 cut(s) 474
BseRI GAGGAG 3 cut(s) 241, 1185, 1320
BseXI GCAGC 2 cut(s) 626, 1294
BseYI CCCAGC 1 cut(s) 316
Bsh1236I CGCG 3 cut(s) 476, 737, 842
BshFI GGCC 3 cut(s) 5, 796, 964
BshNI GGYRCC 2 cut(s) 683, 1199
BshTI ACCGGT 1 cut(s) 532
BsiWI CGTACG 1 cut(s) 1242
BslFI GGGAC 1 cut(s) 1104
BslI CCNNNNNNNGG 9 cut(s) 115, 285, 322, 503, 803, 958, 1004, 1055, 1337
BsmAI GTCTC 2 cut(s) 462, 710
BsmBI CGTCTC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 1104
BsnI GGCC 3 cut(s) 5, 796, 964
Bsp119I TTCGAA 1 cut(s) 1109
Bsp1407I TGTACA 1 cut(s) 1014
Bsp143I GATC 4 cut(s) 327, 364, 372, 450
BspANI GGCC 3 cut(s) 5, 796, 964
BspCNI CTCAG 3 cut(s) 59, 964, 1210
BspFNI CGCG 3 cut(s) 476, 737, 842
BspLI GGNNCC 4 cut(s) 685, 912, 963, 1201
BspPI GGATC 1 cut(s) 359
BspT104I TTCGAA 1 cut(s) 1109
BspT107I GGYRCC 2 cut(s) 683, 1199
BsrFI RCCGGY 2 cut(s) 532, 1048
BsrGI TGTACA 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 2 cut(s) 532, 1048
BssECI CCNNGG 1 cut(s) 959
BssHII GCGCGC 1 cut(s) 474
BssMI GATC 4 cut(s) 327, 364, 372, 450
BssNI GRCGYC 2 cut(s) 726, 1046
BssSI CACGAG 1 cut(s) 1085
Bst2BI CACGAG 1 cut(s) 1085
Bst2UI CCWGG 1 cut(s) 1197
Bst4CI ACNGT 5 cut(s) 158, 704, 897, 986, 1058
Bst6I CTCTTC 1 cut(s) 863
BstACI GRCGYC 2 cut(s) 726, 1046
BstAUI TGTACA 1 cut(s) 1014
BstBAI YACGTR 2 cut(s) 1206, 1290
BstBI TTCGAA 1 cut(s) 1109
BstC8I GCNNGC 5 cut(s) 476, 480, 552, 829, 1159
BstDEI CTNAG 4 cut(s) 46, 470, 972, 1218
BstF5I GGATG 1 cut(s) 1213
BstFNI CGCG 3 cut(s) 476, 737, 842
BstHHI GCGC 2 cut(s) 476, 478
BstKTI GATC 4 cut(s) 330, 367, 375, 453
BstMAI GTCTC 2 cut(s) 462, 710
BstMBI GATC 4 cut(s) 327, 364, 372, 450
BstMWI GCNNNNNNNGC 9 cut(s) 56, 473, 556, 614, 620, 734, 746, 854, 1244
BstNI CCWGG 1 cut(s) 1197
BstPAI GACNNNNGTC 1 cut(s) 1049
BstSCI CCNGG 3 cut(s) 665, 958, 1195
BstUI CGCG 3 cut(s) 476, 737, 842
BstV1I GCAGC 2 cut(s) 626, 1294
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 3 cut(s) 5, 796, 964
BtgZI GCGATG 1 cut(s) 410
BtrI CACGTC 2 cut(s) 1277, 1315
BtsCI GGATG 1 cut(s) 1213
Cac8I GCNNGC 5 cut(s) 476, 480, 552, 829, 1159
CfoI GCGC 2 cut(s) 476, 478
Cfr10I RCCGGY 2 cut(s) 532, 1048
Cfr13I GGNCC 1 cut(s) 962
CseI GACGC 5 cut(s) 65, 722, 734, 1054, 1090
Csp6I GTAC 7 cut(s) 188, 490, 684, 697, 1015, 1243, 1287
CspAI ACCGGT 1 cut(s) 532
CviAII CATG 1 cut(s) 1098
CviQI GTAC 7 cut(s) 188, 490, 684, 697, 1015, 1243, 1287
DdeI CTNAG 4 cut(s) 46, 470, 972, 1218
DpnI GATC 4 cut(s) 329, 366, 374, 452
DpnII GATC 4 cut(s) 327, 364, 372, 450
DraI TTTAAA 3 cut(s) 514, 655, 760
DraIII CACNNNGTG 1 cut(s) 1280
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 863
EarI CTCTTC 1 cut(s) 863
EciI GGCGGA 2 cut(s) 244, 736
Eco57I CTGAAG 1 cut(s) 1121
Eco72I CACGTG 1 cut(s) 1206
EcoRII CCWGG 1 cut(s) 1195
Esp3I CGTCTC 1 cut(s) 462
FaeI CATG 1 cut(s) 1101
FaqI GGGAC 1 cut(s) 1104
FatI CATG 1 cut(s) 1097
FauI CCCGC 1 cut(s) 501
Fnu4HI GCNGC 7 cut(s) 258, 615, 738, 843, 846, 1183, 1308
FokI GGATG 1 cut(s) 1200
Fsp4HI GCNGC 7 cut(s) 258, 615, 738, 843, 846, 1183, 1308
GlaI GCGC 2 cut(s) 475, 477
GluI GCNGC 7 cut(s) 258, 615, 738, 843, 846, 1183, 1308
GsaI CCCAGC 1 cut(s) 320
HaeIII GGCC 3 cut(s) 5, 796, 964
HgaI GACGC 5 cut(s) 65, 722, 734, 1054, 1090
HhaI GCGC 2 cut(s) 476, 478
Hin1I GRCGYC 2 cut(s) 726, 1046
Hin1II CATG 1 cut(s) 1101
Hin6I GCGC 2 cut(s) 474, 476
HinP1I GCGC 2 cut(s) 474, 476
HincII GTYRAC 3 cut(s) 879, 1041, 1054
HindII GTYRAC 3 cut(s) 879, 1041, 1054
HinfI GANTC 7 cut(s) 31, 78, 150, 677, 833, 1189, 1220
HpaI GTTAAC 1 cut(s) 879
HphI GGTGA 3 cut(s) 784, 790, 1090
Hpy166II GTNNAC 7 cut(s) 130, 733, 879, 1015, 1029, 1041, 1054
Hpy188I TCNGA 6 cut(s) 30, 77, 93, 369, 755, 973
Hpy188III TCNNGA 6 cut(s) 66, 136, 448, 1139, 1148, 1217
Hpy8I GTNNAC 7 cut(s) 130, 733, 879, 1015, 1029, 1041, 1054
HpyAV CCTTC 7 cut(s) 49, 507, 807, 998, 1120, 1160, 1258
HpyCH4III ACNGT 5 cut(s) 158, 704, 897, 986, 1058
HpyCH4IV ACGT 8 cut(s) 569, 921, 968, 1020, 1205, 1276, 1289, 1314
HpyCH4V TGCA 2 cut(s) 203, 827
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 473, 556, 614, 620, 734, 746, 854, 1244
HpyF3I CTNAG 4 cut(s) 46, 470, 972, 1218
HpySE526I ACGT 8 cut(s) 569, 921, 968, 1020, 1205, 1276, 1289, 1314
Hsp92I GRCGYC 2 cut(s) 726, 1046
Hsp92II CATG 1 cut(s) 1101
HspAI GCGC 2 cut(s) 474, 476
KpnI GGTACC 1 cut(s) 687
KspAI GTTAAC 1 cut(s) 879
Kzo9I GATC 4 cut(s) 327, 364, 372, 450
LmnI GCTCC 3 cut(s) 910, 1172, 1304
Lsp1109I GCAGC 2 cut(s) 626, 1294
MaeII ACGT 8 cut(s) 569, 921, 968, 1020, 1205, 1276, 1289, 1314
MaeIII GTNAC 6 cut(s) 347, 778, 1058, 1078, 1256, 1318
MalI GATC 4 cut(s) 329, 366, 374, 452
MboI GATC 4 cut(s) 327, 364, 372, 450
MboII GAAGA 4 cut(s) 160, 412, 880, 1279
MflI RGATCY 1 cut(s) 450
MluCI AATT 4 cut(s) 82, 205, 484, 521
MlyI GAGTC 2 cut(s) 87, 1229
MmeI TCCRAC 5 cut(s) 55, 71, 392, 733, 784
MspR9I CCNGG 3 cut(s) 667, 960, 1197
MvaI CCWGG 1 cut(s) 1197
MvnI CGCG 3 cut(s) 476, 737, 842
MwoI GCNNNNNNNGC 9 cut(s) 56, 473, 556, 614, 620, 734, 746, 854, 1244
NciI CCSGG 2 cut(s) 667, 960
NdeII GATC 4 cut(s) 327, 364, 372, 450
NlaIII CATG 1 cut(s) 1101
NlaIV GGNNCC 4 cut(s) 685, 912, 963, 1201
NmuCI GTSAC 3 cut(s) 778, 1078, 1318
NspV TTCGAA 1 cut(s) 1109
PauI GCGCGC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 377
PfeI GAWTC 5 cut(s) 31, 150, 677, 833, 1189
Pfl23II CGTACG 1 cut(s) 1242
PinAI ACCGGT 1 cut(s) 532
PkrI GCNGC 7 cut(s) 259, 616, 739, 844, 847, 1184, 1309
PleI GAGTC 2 cut(s) 86, 1228
PmaCI CACGTG 1 cut(s) 1206
PmlI CACGTG 1 cut(s) 1206
PpsI GAGTC 2 cut(s) 86, 1228
Ppu21I YACGTR 2 cut(s) 1206, 1290
PshAI GACNNNNGTC 1 cut(s) 1049
PshBI ATTAAT 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 1020
Psp6I CCWGG 1 cut(s) 1195
PspCI CACGTG 1 cut(s) 1206
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 1 cut(s) 1195
PspLI CGTACG 1 cut(s) 1242
PspN4I GGNNCC 4 cut(s) 685, 912, 963, 1201
PspPI GGNCC 1 cut(s) 962
PsuI RGATCY 1 cut(s) 450
PteI GCGCGC 1 cut(s) 474
RsaI GTAC 7 cut(s) 189, 491, 685, 698, 1016, 1244, 1288
RsaNI GTAC 7 cut(s) 188, 490, 684, 697, 1015, 1243, 1287
SatI GCNGC 7 cut(s) 258, 615, 738, 843, 846, 1183, 1308
Sau3AI GATC 4 cut(s) 327, 364, 372, 450
Sau96I GGNCC 1 cut(s) 962
SchI GAGTC 2 cut(s) 87, 1229
ScrFI CCNGG 3 cut(s) 667, 960, 1197
SfuI TTCGAA 1 cut(s) 1109
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 4 cut(s) 82, 205, 484, 521
StyD4I CCNGG 3 cut(s) 665, 958, 1195
TaaI ACNGT 5 cut(s) 158, 704, 897, 986, 1058
TaiI ACGT 8 cut(s) 572, 924, 971, 1023, 1208, 1279, 1292, 1317
TaqI TCGA 7 cut(s) 171, 330, 363, 435, 528, 1109, 1333
TaqII GACCGA 1 cut(s) 919
TasI AATT 4 cut(s) 82, 205, 484, 521
TatI WGTACW 3 cut(s) 187, 696, 1014
TauI GCSGC 5 cut(s) 260, 740, 845, 848, 1185
TfiI GAWTC 5 cut(s) 31, 150, 677, 833, 1189
TseFI GTSAC 3 cut(s) 778, 1078, 1318
TseI GCWGC 2 cut(s) 614, 1307
Tsp45I GTSAC 3 cut(s) 778, 1078, 1318
TspDTI ATGAA 1 cut(s) 413
TspGWI ACGGA 7 cut(s) 338, 588, 790, 797, 923, 1014, 1128
VspI ATTAAT 1 cut(s) 524
XapI RAATTY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.