AT5G55180

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012393
Physical Location & Seq
Forward (+)
22388521 .. 22390763
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55180.2

Sequence Viewer

Length: 1383 bp
ATGGCGGTCTTCGTTTTATCTCTACTCATACTCTCTTCCTTCTCAGCCATTCCATTCACTTATGCAGATTCTGGAATGATCGGAGTTAACTACGGCCGTATAGCAGACAATCTTCCGGCACCGGAGAAAGTAGTTGAGCTACTGAAAACACAAGGAATCAACCGCATCAAGCTTTACGACACCGAGACAACTGTACTAACCGCACTCGCGAACTCCGGAATCAAAGTCGTTGTCTCTCTCCCCAACGAAAACCTCGCTTCCGCCGCCGCAGATCAGAGCTACACCGACACTTGGGTTCAGGACAACATAAAGAAGTACATTCCAGCGACGGATATCGAAGCAATCGCCGTTGGGAACGAAGTGTTCGTCGATCCGAGGAACACGACGACGTATCTCGTTCCAGCTATGAAGAATGTTCAAAGCTCTCTCGTCAAGTTCAATCTCGACAAATCCATTAAGATCTCGTCGCCGATTGCTTTAAGCGCGTTGGCGAGTTCGTATCCACCGTCGGCTGGTTCGTTTAAACCGGAGTTAATCGAACCGGTTATTAAACCGATGCTTGATCTCCTCCGCAAAACGTCGTCGCATCTTATGGTGAATGCTTATCCTTTCTTTGCTTACGCAGCTAACGCCGATAAGATCTCGTTGGATTACGCGTTGTTTAAGGAGAACGCCGGGAATGTTGATTCCGGTAACGGTTTGAAGTATAACAGTCTCTTAGACGCTCAGATCGACGCCGTTTTCGCCGCAATGTCCGCCGTTGGATTTAACGACGTTAAGCTTGTGGTGACAGAGACAGGCTGGCCTTCTGCCGGAGACGAGAACGAGATTGGTGCTGGTTCGGCTAACGCGGCGGCGTATAACGGCGGGTTAGTTAAAAGAGTGTTGACGGGAAACGGAACGCCGTTAAAACCGAAGGAGCCACTAAACGTTTATCTGTTCGCTCTGTTTAACGAGAATCAGAAAACGGGTCCGACTTCTGAGAGAAACTACGGGTTGTTTTACCCAAACGAGAACAAAGTGTATGACGTTTCGCTCAACGGTAAGTCAACGCCGGTCAACGATAACAAAGAGAAGGTTGTTCCGGTGAAACCGTCGCTCGTGGGACAGACGTGGTGTGTGGCGAATGGTAAAACGACGAAGGAGAAGCTTCAGGAAGGTCTCGACTACGCTTGTGGCGAAGGAGGTGCTGATTGCCGTCCGATTCAACCGGGTGCCACGTGTTATAATCCTGAATCGTTAGAAGCTCACGCTTCCTACGCGTTCAACAGTTACTATCAGAAGAACGCACGTGGAGTTGGCACGTGTAATTTTGGTGGTGCAGCGTACGTGGTCTCGCAACCTCCTAAGTATGGGAAATGCGAGTTTCCAACAGGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

460

Amino Acids

49.36

Weight (kDa)

5.63

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 27 - 345 2e-91 Glycosyl hydrolases family 17
X8 PF07983 371 - 442 1.8e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26830 AT4G26830 AT5G55180 AT5G55180
fragaria_vesca FvH4_3g23410 FvH4_3g23410
malus_domestica MD03G1194600.v1.1 MD11G1210800.v1.1
prunus_persica Prupe.4G222100_v2.0.a1
pyrus_communis pycom03g14670 pycom11g18630
rosa_chinensis RchiOBHm_Chr5g0041211
rosa_laevigata RLG00000034037
rosa_multiflora Rmu_sc0003502.1_g000013
rosa_roxburghii Rroxscaffold_1G00039410
rosa_rugosa Rorug05G0190600
rosa_samantha Rh5BG281600 Rh5CG313600
rosa_wichuraiana Rw5G026020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1227
AccB1I GGYRCC 2 cut(s) 118, 1214
AccII CGCG 5 cut(s) 209, 485, 656, 851, 1262
AccIII TCCGGA 1 cut(s) 215
AclI AACGTT 1 cut(s) 930
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 1136
AcvI CACGTG 3 cut(s) 1221, 1292, 1305
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 3 cut(s) 195, 317, 1328
AfiI CCNNNNNNNGG 4 cut(s) 291, 512, 812, 1352
AflIII ACRYGT 4 cut(s) 654, 1220, 1260, 1304
AgeI ACCGGT 1 cut(s) 541
AgsI TTSAA 5 cut(s) 419, 439, 703, 1208, 1267
AjiI CACGTC 1 cut(s) 1113
AluBI AGCT 9 cut(s) 139, 172, 279, 404, 423, 626, 781, 1150, 1247
AluI AGCT 9 cut(s) 139, 172, 279, 404, 423, 626, 781, 1150, 1247
Alw26I GTCTC 7 cut(s) 179, 238, 719, 788, 810, 1166, 1339
AlwI GGATC 1 cut(s) 365
AlwNI CAGNNNCTG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 2 cut(s) 94, 803
ApeKI GCWGC 2 cut(s) 623, 1322
ArsI GACNNNNNNTTYG 6 cut(s) 216, 248, 351, 383, 725, 757
AsiGI ACCGGT 1 cut(s) 541
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 971
AsuC2I CCSGG 2 cut(s) 676, 1212
AsuHPI GGTGA 3 cut(s) 607, 799, 1099
AvaII GGWCC 1 cut(s) 971
BanI GGYRCC 2 cut(s) 118, 1214
BauI CACGAG 1 cut(s) 1100
BbrPI CACGTG 3 cut(s) 1221, 1292, 1305
BbvI GCAGC 2 cut(s) 635, 1334
BceAI ACGGC 8 cut(s) 81, 109, 332, 722, 743, 880, 889, 1182
BcgI CGANNNNNNTGC 4 cut(s) 815, 849, 1169, 1203
BciVI GTATCC 1 cut(s) 510
BcnI CCSGG 2 cut(s) 676, 1212
BcoDI GTCTC 7 cut(s) 179, 238, 719, 788, 810, 1166, 1339
BfuI GTATCC 1 cut(s) 510
BglII AGATCT 2 cut(s) 459, 639
BisI GCNGC 7 cut(s) 264, 267, 624, 747, 852, 855, 1323
BlsI GCNGC 7 cut(s) 265, 268, 625, 748, 853, 856, 1324
Bme1390I CCNGG 2 cut(s) 676, 1212
Bme18I GGWCC 1 cut(s) 971
BmgBI CACGTC 1 cut(s) 1113
BmgT120I GGNCC 1 cut(s) 971
BmiI GGNNCC 4 cut(s) 120, 921, 972, 1216
BmrFI CCNGG 2 cut(s) 676, 1212
BmsI GCATC 3 cut(s) 174, 546, 595
BpuMI CCSGG 2 cut(s) 676, 1212
BsaAI YACGTR 4 cut(s) 1221, 1292, 1305, 1330
BsaHI GRCGYC 1 cut(s) 735
BsaI GGTCTC 2 cut(s) 1166, 1339
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 6 cut(s) 121, 215, 526, 541, 689, 1084
Bsc4I CCNNNNNNNGG 4 cut(s) 291, 512, 812, 1352
Bse118I RCCGGY 2 cut(s) 541, 1054
Bse3DI GCAATG 1 cut(s) 756
BseAI TCCGGA 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 374
BseLI CCNNNNNNNGG 4 cut(s) 291, 512, 812, 1352
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 3 cut(s) 57, 740, 972
BseRI GAGGAG 1 cut(s) 557
BseX3I CGGCCG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 635, 1334
BsgI GTGCAG 1 cut(s) 1341
Bsh1236I CGCG 5 cut(s) 209, 485, 656, 851, 1262
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 96, 805
BshNI GGYRCC 2 cut(s) 118, 1214
BshTI ACCGGT 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 97
BsiWI CGTACG 1 cut(s) 1326
BslFI GGGAC 1 cut(s) 1119
BslI CCNNNNNNNGG 4 cut(s) 291, 512, 812, 1352
BsmAI GTCTC 7 cut(s) 179, 238, 719, 788, 810, 1166, 1339
BsmBI CGTCTC 1 cut(s) 810
BsmFI GGGAC 1 cut(s) 1119
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 2 cut(s) 96, 805
Bso31I GGTCTC 2 cut(s) 1166, 1339
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
Bsp68I TCGCGA 1 cut(s) 209
BspANI GGCC 2 cut(s) 96, 805
BspCNI CTCAG 3 cut(s) 56, 739, 973
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 5 cut(s) 209, 485, 656, 851, 1262
BspLI GGNNCC 4 cut(s) 120, 921, 972, 1216
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 2 cut(s) 118, 1214
BspTNI GGTCTC 2 cut(s) 1166, 1339
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 2 cut(s) 541, 1054
BssAI RCCGGY 2 cut(s) 541, 1054
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
BssNI GRCGYC 1 cut(s) 735
BssSI CACGAG 1 cut(s) 1100
Bst2BI CACGAG 1 cut(s) 1100
Bst4CI ACNGT 7 cut(s) 193, 507, 698, 713, 1043, 1095, 1271
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 735
BstBAI YACGTR 4 cut(s) 1221, 1292, 1305, 1330
BstC8I GCNNGC 1 cut(s) 803
BstDEI CTNAG 5 cut(s) 43, 718, 726, 981, 1347
BstFNI CGCG 5 cut(s) 209, 485, 656, 851, 1262
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 7 cut(s) 81, 274, 373, 462, 565, 642, 732
BstMAI GTCTC 7 cut(s) 179, 238, 719, 788, 810, 1166, 1339
BstMBI GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 9 cut(s) 263, 482, 623, 629, 743, 755, 842, 851, 1259
BstSCI CCNGG 2 cut(s) 674, 1210
BstUI CGCG 5 cut(s) 209, 485, 656, 851, 1262
BstV1I GCAGC 2 cut(s) 635, 1334
BstX2I RGATCY 2 cut(s) 459, 639
BstYI RGATCY 2 cut(s) 459, 639
BstZI CGGCCG 1 cut(s) 94
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 2 cut(s) 96, 805
BtrI CACGTC 1 cut(s) 1113
BtuMI TCGCGA 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 803
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 2 cut(s) 541, 1054
Cfr13I GGNCC 1 cut(s) 971
CseI GACGC 2 cut(s) 731, 743
Csp6I GTAC 3 cut(s) 194, 316, 1327
CspAI ACCGGT 1 cut(s) 541
CviQI GTAC 3 cut(s) 194, 316, 1327
DdeI CTNAG 5 cut(s) 43, 718, 726, 981, 1347
DpnI GATC 7 cut(s) 80, 273, 372, 461, 564, 641, 731
DpnII GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
DraI TTTAAA 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 94
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
EciI GGCGGA 2 cut(s) 250, 745
EclXI CGGCCG 1 cut(s) 94
Eco31I GGTCTC 2 cut(s) 1166, 1339
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 971
Eco52I CGGCCG 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 1136
Eco72I CACGTG 3 cut(s) 1221, 1292, 1305
EcoRV GATATC 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 810
FaqI GGGAC 1 cut(s) 1119
FauI CCCGC 1 cut(s) 860
Fnu4HI GCNGC 7 cut(s) 264, 267, 624, 747, 852, 855, 1323
Fsp4HI GCNGC 7 cut(s) 264, 267, 624, 747, 852, 855, 1323
GlaI GCGC 1 cut(s) 484
GluI GCNGC 7 cut(s) 264, 267, 624, 747, 852, 855, 1323
HaeIII GGCC 2 cut(s) 96, 805
HgaI GACGC 2 cut(s) 731, 743
HhaI GCGC 1 cut(s) 485
Hin1I GRCGYC 1 cut(s) 735
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HincII GTYRAC 4 cut(s) 88, 888, 1050, 1060
HindII GTYRAC 4 cut(s) 88, 888, 1050, 1060
HindIII AAGCTT 3 cut(s) 170, 779, 1148
HinfI GANTC 7 cut(s) 68, 156, 219, 686, 958, 1204, 1235
HpaI GTTAAC 1 cut(s) 88
HphI GGTGA 3 cut(s) 607, 799, 1099
Hpy166II GTNNAC 4 cut(s) 88, 888, 1050, 1060
Hpy188I TCNGA 9 cut(s) 83, 276, 375, 729, 963, 975, 982, 1203, 1281
Hpy188III TCNNGA 8 cut(s) 72, 208, 216, 299, 443, 1154, 1163, 1232
Hpy8I GTNNAC 4 cut(s) 88, 888, 1050, 1060
HpyAV CCTTC 7 cut(s) 49, 816, 910, 1069, 1135, 1151, 1175
HpyCH4III ACNGT 7 cut(s) 193, 507, 698, 713, 1043, 1095, 1271
HpyCH4V TGCA 2 cut(s) 65, 1322
HpyF10VI GCNNNNNNNGC 9 cut(s) 263, 482, 623, 629, 743, 755, 842, 851, 1259
HpyF3I CTNAG 5 cut(s) 43, 718, 726, 981, 1347
Hsp92I GRCGYC 1 cut(s) 735
HspAI GCGC 1 cut(s) 483
Kpn2I TCCGGA 1 cut(s) 215
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
LmnI GCTCC 1 cut(s) 919
Lsp1109I GCAGC 2 cut(s) 635, 1334
LweI GCATC 3 cut(s) 174, 546, 595
MaeIII GTNAC 3 cut(s) 692, 787, 1271
MalI GATC 7 cut(s) 80, 273, 372, 461, 564, 641, 731
MboI GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
MboII GAAGA 4 cut(s) 27, 104, 421, 1294
MflI RGATCY 2 cut(s) 459, 639
MluCI AATT 1 cut(s) 1309
MluI ACGCGT 2 cut(s) 654, 1260
MmeI TCCRAC 3 cut(s) 627, 742, 998
MnlI CCTC 5 cut(s) 263, 369, 578, 1178, 1353
MroI TCCGGA 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 676, 1212
MssI GTTTAAAC 1 cut(s) 523
Mva1269I GAATGC 1 cut(s) 604
MvnI CGCG 5 cut(s) 209, 485, 656, 851, 1262
MwoI GCNNNNNNNGC 9 cut(s) 263, 482, 623, 629, 743, 755, 842, 851, 1259
NciI CCSGG 2 cut(s) 676, 1212
NdeII GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
NlaIV GGNNCC 4 cut(s) 120, 921, 972, 1216
NmuCI GTSAC 1 cut(s) 787
NruI TCGCGA 1 cut(s) 209
PcsI WCGNNNNNNNCGW 5 cut(s) 363, 503, 515, 729, 1176
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 7 cut(s) 68, 156, 219, 686, 958, 1204, 1235
Pfl23II CGTACG 1 cut(s) 1326
PinAI ACCGGT 1 cut(s) 541
PkrI GCNGC 7 cut(s) 265, 268, 625, 748, 853, 856, 1324
PmaCI CACGTG 3 cut(s) 1221, 1292, 1305
PmeI GTTTAAAC 1 cut(s) 523
PmlI CACGTG 3 cut(s) 1221, 1292, 1305
Ppu21I YACGTR 4 cut(s) 1221, 1292, 1305, 1330
PsiI TTATAA 1 cut(s) 1227
Psp1406I AACGTT 1 cut(s) 930
PspCI CACGTG 3 cut(s) 1221, 1292, 1305
PspLI CGTACG 1 cut(s) 1326
PspN4I GGNNCC 4 cut(s) 120, 921, 972, 1216
PspPI GGNCC 1 cut(s) 971
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 459, 639
RruI TCGCGA 1 cut(s) 209
RsaI GTAC 3 cut(s) 195, 317, 1328
RsaNI GTAC 3 cut(s) 194, 316, 1327
SatI GCNGC 7 cut(s) 264, 267, 624, 747, 852, 855, 1323
Sau3AI GATC 7 cut(s) 78, 271, 370, 459, 562, 639, 729
Sau96I GGNCC 1 cut(s) 971
ScrFI CCNGG 2 cut(s) 676, 1212
SfaNI GCATC 3 cut(s) 174, 546, 595
SinI GGWCC 1 cut(s) 971
Sse9I AATT 1 cut(s) 1309
StyD4I CCNGG 2 cut(s) 674, 1210
TaaI ACNGT 7 cut(s) 193, 507, 698, 713, 1043, 1095, 1271
TaqI TCGA 6 cut(s) 336, 369, 444, 537, 732, 1164
TasI AATT 1 cut(s) 1309
TatI WGTACW 2 cut(s) 193, 315
TauI GCSGC 5 cut(s) 266, 269, 749, 854, 857
TfiI GAWTC 7 cut(s) 68, 156, 219, 686, 958, 1204, 1235
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 2 cut(s) 623, 1322
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 1 cut(s) 422
TspGWI ACGGA 2 cut(s) 344, 912
VpaK11BI GGWCC 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.