Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018281

Physical Location & Seq

Genomic Coordinates Forward (+)

13497287 .. 13498820

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTCTGCAAACCAGGAGGAAGACAAGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAGCTGATGAATGCTTACTGTGACCGGCAATCTGTGGACATGAACTCCATTGCTTTCTTGTTTGATGGGCGTCGTCTTCGTGCTGAGCAAACTCCCGATGAGCTTGACATGGAGGATGGTGATGAGATCGATGCGATGCTCCATCAGACTGGTGGCAGCGGTGGTGGTGCTACGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009987 GO:0010286 GO:0010468 GO:0010556 GO:0016925 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

100

Amino Acids

10.98

Weight (kDa)

4.91

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	18 - 88	1.2e-26	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	20 - 90	2e-17	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26840
fragaria_vesca	FvH4_2g18770
malus_domestica	MD10G1161600.v1.1
prunus_persica	Prupe.8G201100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0284511
rosa_multiflora	Rmu_sc0005257.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184650
rosa_rugosa	Rorug06G0163900
rosa_samantha	Rh6DG271400
rosa_wichuraiana	Rw6G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	12, 31
AluBI	AGCT	4 cut(s)	47, 118, 127, 226
AluI	AGCT	4 cut(s)	47, 118, 127, 226
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	27, 191
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	4 cut(s)	71, 182, 233, 273
BciT130I	CCWGG	2 cut(s)	14, 33
BcoDI	GTCTC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	280
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	14, 33
BmrFI	CCNGG	2 cut(s)	14, 33
BmsI	GCATC	2 cut(s)	244, 249
BpiI	GAAGAC	2 cut(s)	27, 191
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	14, 33
BseCI	ATCGAT	1 cut(s)	252
BseGI	GGATG	2 cut(s)	82, 244
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	128, 198
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	99, 249
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	127, 199
BspDI	ATCGAT	1 cut(s)	252
BspPI	GGATC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	147
BssMI	GATC	2 cut(s)	99, 249
BssNI	GRCGYC	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	14, 33
Bst4CI	ACNGT	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	114, 207
BstF5I	GGATG	2 cut(s)	82, 244
BstKTI	GATC	2 cut(s)	102, 252
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	99, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	2 cut(s)	14, 33
BstSCI	CCNGG	2 cut(s)	12, 31
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	2 cut(s)	27, 191
BstXI	CCANNNNNNTGG	1 cut(s)	272
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	299
BsuTUI	ATCGAT	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	82, 244
Cfr10I	RCCGGY	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	163, 232
CviJI	RGCY	6 cut(s)	31, 47, 118, 127, 226, 299
CviKI_1	RGCY	6 cut(s)	31, 47, 118, 127, 226, 299
DdeI	CTNAG	2 cut(s)	114, 207
DpnI	GATC	2 cut(s)	101, 251
DpnII	GATC	2 cut(s)	99, 249
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	12, 31
EcoT38I	GRGCYC	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	2 cut(s)	166, 235
FaiI	YATR	2 cut(s)	164, 233
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	162, 231
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	2 cut(s)	89, 251
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	166, 235
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	103, 121, 218
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	114, 207
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	166, 235
Kzo9I	GATC	2 cut(s)	99, 249
LmnI	GCTCC	2 cut(s)	44, 267
LpnPI	CCDG	6 cut(s)	18, 26, 45, 59, 161, 258
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	2 cut(s)	244, 249
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	101, 251
MboI	GATC	2 cut(s)	99, 249
MboII	GAAGA	2 cut(s)	32, 191
MhlI	GDGCHC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	10, 35, 79, 229
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	14, 33
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	2 cut(s)	14, 33
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	2 cut(s)	99, 249
NlaIII	CATG	2 cut(s)	166, 235
NmuCI	GTSAC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	2 cut(s)	12, 31
PspGI	CCWGG	2 cut(s)	12, 31
SacI	GAGCTC	1 cut(s)	49
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	99, 249
ScrFI	CCNGG	2 cut(s)	14, 33
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	5 cut(s)	49, 90, 120, 129, 228
SfaNI	GCATC	2 cut(s)	244, 249
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SsiI	CCGC	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	2 cut(s)	12, 31
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	146, 179
TspGWI	ACGGA	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.