FvH4_2g18770

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018281
Physical Location & Seq
Forward (+)
16015398 .. 16016514
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18770.t1

Sequence Viewer

Length: 303 bp
ATGTCAGGAACACCAGGAGGAGCTCCTGAGGAAGATAAGAAGCCCAGTGACCAATCTGCACATATTAACCTCAAAGTGAAGGGTCAGGATGGTAATGAGGTGTTCTTCAGGATCAAACATAGCACCCAGCTGAAGAAACTTATGAATGCATACTGTGATCGGCAGTCAGTGGACATGAACTCCATCGCGTTCTTGTTTGATGGACGCAGACTCCGGCCGGAGCAGACTCCAGATGAGCTTGAGATGGAAGATGGCGATGAGATTGATGCAATGCTGCACCAGACCGGAGGAGGGCGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

101

Amino Acids

11.14

Weight (kDa)

5.09

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 22 - 92 1.4e-26 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 24 - 94 2.3e-16 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26840
fragaria_vesca FvH4_2g18770
malus_domestica MD10G1161600.v1.1
prunus_persica Prupe.8G201100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0284511
rosa_multiflora Rmu_sc0005257.1_g000001
rosa_roxburghii Rroxscaffold_7G00184650
rosa_rugosa Rorug06G0163900
rosa_samantha Rh6DG271400
rosa_wichuraiana Rw6G023780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 295
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 91, 152
AfiI CCNNNNNNNGG 1 cut(s) 291
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 3 cut(s) 23, 130, 238
AluI AGCT 3 cut(s) 23, 130, 238
Alw21I GWGCWC 1 cut(s) 25
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 27
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 261
BccI CCATC 5 cut(s) 83, 191, 194, 238, 245
BciT130I CCWGG 1 cut(s) 15
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 45
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 33, 303
BseX3I CGGCCG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 126
BsgI GTGCAG 2 cut(s) 42, 260
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 3 cut(s) 214, 218, 285
BslI CCNNNNNNNGG 1 cut(s) 291
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 111, 157
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 188
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 45
BssMI GATC 2 cut(s) 111, 157
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 94
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 2 cut(s) 114, 160
BstMBI GATC 2 cut(s) 111, 157
BstMCI CGRYCG 1 cut(s) 218
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 261
BstZI CGGCCG 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 217
BtgZI GCGATG 2 cut(s) 169, 270
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 52, 174
Cac8I GCNNGC 1 cut(s) 297
CseI GACGC 1 cut(s) 213
CviAII CATG 1 cut(s) 175
CviJI RGCY 5 cut(s) 23, 43, 130, 217, 238
CviKI_1 RGCY 5 cut(s) 23, 43, 130, 217, 238
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 113, 159
DpnII GATC 2 cut(s) 111, 157
EaeI YGGCCR 1 cut(s) 215
EagI CGGCCG 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 23
EclXI CGGCCG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 25
Eco52I CGGCCG 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 2 cut(s) 91, 152
Eco81I CCTNAGG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 1 cut(s) 178
FaiI YATR 6 cut(s) 63, 120, 143, 151, 176, 301
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
GsaI CCCAGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 217
HapII CCGG 3 cut(s) 214, 218, 285
HgaI GACGC 1 cut(s) 213
Hin1II CATG 1 cut(s) 178
HinfI GANTC 2 cut(s) 210, 226
HpaII CCGG 3 cut(s) 214, 218, 285
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 5 cut(s) 6, 26, 86, 109, 230
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 59, 149, 269, 277
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 2 cut(s) 111, 157
LmnI GCTCC 3 cut(s) 20, 28, 220
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 113, 159
MboI GATC 2 cut(s) 111, 157
MboII GAAGA 4 cut(s) 44, 97, 145, 260
MhlI GDGCHC 1 cut(s) 25
MlyI GAGTC 2 cut(s) 204, 220
MnlI CCTC 6 cut(s) 11, 22, 80, 91, 281, 284
Mph1103I ATGCAT 1 cut(s) 151
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 3 cut(s) 214, 218, 285
MspR9I CCNGG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 188
NdeII GATC 2 cut(s) 111, 157
NlaIII CATG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 151
PctI GAATGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 2 cut(s) 204, 220
PpsI GAGTC 2 cut(s) 204, 220
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 130
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 2 cut(s) 111, 157
SchI GAGTC 2 cut(s) 204, 220
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 25, 72, 102, 132, 240
SfaNI GCATC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SsiI CCGC 1 cut(s) 295
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 155
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 52, 174
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 158, 191
TspRI CASTG 2 cut(s) 52, 174
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.