MD10G1161600.v1.1

Small ubiquitinrelated modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0018281
Physical Location & Seq
Forward (+)
25249175 .. 25249934
760 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1161600.v1.1.491

Sequence Viewer

Length: 306 bp
ATGTCAGCAACAGATGGAGGTAGAGGTGGTGGTGGGAGGGAGGAAGAGAAGAAACCCCTGGATCAGCCTGCCCACATTAACCTCAAAGTCAAGGGCCAGGATGGTAACGAGGTGTTTTTTAGAATTAAACATACCACCCAACTGAAGAAGCTCATGACTGCATACTGTGATCGGCAGTCAGTGGACATGAACTCGATCGCCTTCTTGTTCGATGGCCGGAGACTCCGGCCTGAGCAGACTCCAGAGGAGCTTGAGATGGAAGATGGTGATGAGATTGATGCAATGCTGCACCAAACCGGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

102

Amino Acids

11.32

Weight (kDa)

5.14

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 26 - 96 5.9e-27 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 28 - 98 2.3e-16 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26840
fragaria_vesca FvH4_2g18770
malus_domestica MD10G1161600.v1.1
prunus_persica Prupe.8G201100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0284511
rosa_multiflora Rmu_sc0005257.1_g000001
rosa_roxburghii Rroxscaffold_7G00184650
rosa_rugosa Rorug06G0163900
rosa_samantha Rh6DG271400
rosa_wichuraiana Rw6G023780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 164
AjnI CCWGG 2 cut(s) 57, 96
AluBI AGCT 2 cut(s) 151, 250
AluI AGCT 2 cut(s) 151, 250
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 69
AoxI GGCC 3 cut(s) 94, 214, 227
ApeKI GCWGC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 278
BbvI GCAGC 1 cut(s) 273
BccI CCATC 5 cut(s) 8, 95, 206, 250, 257
BciT130I CCWGG 2 cut(s) 59, 98
BcoDI GTCTC 1 cut(s) 214
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 59, 98
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 59, 98
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 59, 98
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 3 cut(s) 96, 216, 229
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 3 cut(s) 217, 226, 297
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 3 cut(s) 96, 216, 229
Bsp143I GATC 3 cut(s) 61, 169, 195
BspANI GGCC 3 cut(s) 96, 216, 229
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 153
BspPI GGATC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 61, 169, 195
Bst2UI CCWGG 2 cut(s) 59, 98
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 3 cut(s) 64, 172, 198
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 3 cut(s) 61, 169, 195
BstMCI CGRYCG 1 cut(s) 198
BstNI CCWGG 2 cut(s) 59, 98
BstSCI CCNGG 2 cut(s) 57, 96
BstV1I GCAGC 1 cut(s) 273
BsuRI GGCC 3 cut(s) 96, 216, 229
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 94
CviAII CATG 2 cut(s) 154, 187
CviJI RGCY 6 cut(s) 67, 96, 151, 216, 229, 250
CviKI_1 RGCY 6 cut(s) 67, 96, 151, 216, 229, 250
DdeI CTNAG 1 cut(s) 231
DpnI GATC 3 cut(s) 63, 171, 197
DpnII GATC 3 cut(s) 61, 169, 195
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 57, 96
FaeI CATG 2 cut(s) 157, 190
FaiI YATR 4 cut(s) 132, 155, 163, 188
FatI CATG 2 cut(s) 153, 186
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 287
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 3 cut(s) 96, 216, 229
HapII CCGG 3 cut(s) 217, 226, 297
Hin1II CATG 2 cut(s) 157, 190
HinfI GANTC 2 cut(s) 222, 238
HpaII CCGG 3 cut(s) 217, 226, 297
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 154, 242
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 161, 281, 289
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 157, 190
Kzo9I GATC 3 cut(s) 61, 169, 195
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 44, 71, 81, 83, 110, 230, 239, 243, 255
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 104
MalI GATC 3 cut(s) 63, 171, 197
MboI GATC 3 cut(s) 61, 169, 195
MboII GAAGA 4 cut(s) 56, 61, 157, 272
MluCI AATT 1 cut(s) 123
MlyI GAGTC 2 cut(s) 216, 232
MnlI CCTC 8 cut(s) 11, 17, 30, 34, 92, 103, 238, 293
MseI TTAA 2 cut(s) 78, 126
MspI CCGG 3 cut(s) 217, 226, 297
MspR9I CCNGG 2 cut(s) 59, 98
MvaI CCWGG 2 cut(s) 59, 98
NdeII GATC 3 cut(s) 61, 169, 195
NlaIII CATG 2 cut(s) 157, 190
PagI TCATGA 1 cut(s) 153
PkrI GCNGC 1 cut(s) 288
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 2 cut(s) 216, 232
PpsI GAGTC 2 cut(s) 216, 232
Psp6I CCWGG 2 cut(s) 57, 96
PspGI CCWGG 2 cut(s) 57, 96
PspPI GGNCC 1 cut(s) 94
PvuI CGATCG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 78, 126
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 61, 169, 195
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 2 cut(s) 216, 232
ScrFI CCNGG 2 cut(s) 59, 98
SetI ASST 6 cut(s) 22, 28, 84, 114, 153, 252
SfaNI GCATC 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 57, 96
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 194, 210
TasI AATT 1 cut(s) 123
Tru1I TTAA 2 cut(s) 78, 126
Tru9I TTAA 2 cut(s) 78, 126
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.