AT4G27400

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017497
Physical Location & Seq
Forward (+)
13705267 .. 13706843
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27400.1

Sequence Viewer

Length: 1026 bp
ATGGAGGTCCCAAAATCCTCATTGCTAATGATAATTTTTGTGGTAGCTTCATGTTTCTTGCATGTCAAGGCTTGGCATGGTCAGACTTATTGTGGTGGCAATGCGACTCCCCGATGCCAGCTCCGGTACATCGACTGTCCTGAAGAGTGCCCTACCGAAATGTTCCCCAACTCTCAGAACAAAATTTGTTGGGTTGATTGCTTTAAACCCCTTTGCGAGGCCGTGTGTCGGGCGGTAAAACCCAACTGCGAATCCTATGGATCAATTTGTCTAGATCCGAGGTTCATAGGTGGTGATGGAATTGTGTTCTACTTCCATGGAAAGAGCAATGAACATTTTAGCATTGTCTCGGACCCTGACTTTCAGATCAATGCTAGGTTCACTGGTCATAGACCTGCTGGCCGCACTAGAGACTTTACATGGATCCAAGCTCTCGGCTTCCTCTTTAACTCCCACAAATTCTCCCTTGAGACCACCAAAGTCGCCACTTGGGACAGCAACCTTGATCACCTCAAGTTCACTATCGACGGCCAAGATTTAATTATCCCTCAAGAAACTTTATCCACTTGGTACTCATCCGACAAAGACATCAAGATTGAAAGGTTGACAGAGAAGAACAGTGTGATCGTGACTATCAAAGACAAAGCTGAGATCATGGTCAACGTGGTTCCAGTGACCAAAGAAGATGATAGAATCCACAACTACAAATTACCTGTAGATGACTGTTTTGCCCATTTTGAGGTCCAGTTCAAGTTTATTAATCTGTCCCCAAAAGTCGATGGAATCTTGGGACGCACTTATAGACCCGATTTTAAGAATCCGGCTAAACCAGGAGTCGTAATGCCAGTGGTGGGAGGTGAAGATAGCTTTAGGACATCTTCTCTGCTCTCTCATGTTTGCAAAACTTGTTTGTTCTCTGAAGATCCCGCCGTTGCGAGTGGCTCTGTCAAGCCCAAAAGTACATACGCATTGTTAGATTGCAGCCGTGGTGCGTCTTCCGGCTATGGACTCGTCTGCAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

341

Amino Acids

38.27

Weight (kDa)

7.09

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 249 - 305 1.2e-25 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27400 AT5G54370
malus_domestica MD11G1238300.v1.1
prunus_persica Prupe.4G188500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0035121
rosa_multiflora Rmu_sc0000879.1_g000008 Rmu_sc0005362.1_g000004
rosa_rugosa Rorug05G0150200
rosa_samantha Rh5AG243000 Rh5BG242600 Rh5CG274200 Rh5DG251300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AciI CCGC 3 cut(s) 233, 403, 927
AclWI GGATC 5 cut(s) 268, 269, 418, 431, 917
AcoI YGGCCR 2 cut(s) 400, 529
AcsI RAATTY 2 cut(s) 183, 458
AcuI CTGAAG 2 cut(s) 162, 939
AfaI GTAC 3 cut(s) 128, 572, 961
AfiI CCNNNNNNNGG 4 cut(s) 217, 228, 739, 851
AgsI TTSAA 2 cut(s) 599, 751
AjnI CCWGG 1 cut(s) 829
AluBI AGCT 5 cut(s) 47, 121, 431, 647, 867
AluI AGCT 5 cut(s) 47, 121, 431, 647, 867
Alw26I GTCTC 3 cut(s) 352, 405, 464
AlwI GGATC 5 cut(s) 268, 269, 418, 431, 917
AoxI GGCC 3 cut(s) 219, 400, 529
ApeKI GCWGC 1 cut(s) 981
ApoI RAATTY 2 cut(s) 183, 458
AseI ATTAAT 1 cut(s) 759
AspS9I GGNCC 3 cut(s) 7, 352, 742
AsuHPI GGTGA 3 cut(s) 305, 500, 869
AvaII GGWCC 3 cut(s) 7, 352, 742
BaeGI GKGCMC 1 cut(s) 152
BamHI GGATCC 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 987
BbvI GCAGC 1 cut(s) 993
BccI CCATC 2 cut(s) 290, 773
BceAI ACGGC 4 cut(s) 206, 544, 914, 969
BciT130I CCWGG 1 cut(s) 831
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 3 cut(s) 352, 405, 464
BfaI CTAG 3 cut(s) 272, 375, 408
BfmI CTRYAG 2 cut(s) 714, 1015
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 2 cut(s) 403, 982
BlsI GCNGC 2 cut(s) 404, 983
Bme1390I CCNGG 1 cut(s) 831
Bme18I GGWCC 3 cut(s) 7, 352, 742
BmgT120I GGNCC 3 cut(s) 7, 352, 742
BmiI GGNNCC 4 cut(s) 9, 354, 425, 669
BmrFI CCNGG 1 cut(s) 831
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 987
BpuEI CTTGAG 3 cut(s) 488, 497, 534
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 278, 316, 985
BsaWI WCCGGW 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 228, 739, 851
Bse1I ACTGG 4 cut(s) 388, 671, 745, 845
Bse3DI GCAATG 3 cut(s) 20, 106, 334
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 278, 316, 985
BseGI GGATG 1 cut(s) 575
BseLI CCNNNNNNNGG 4 cut(s) 217, 228, 739, 851
BseMI GCAATG 3 cut(s) 20, 106, 334
BseMII CTCAG 2 cut(s) 188, 639
BseNI ACTGG 4 cut(s) 388, 671, 745, 845
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 993
BshFI GGCC 3 cut(s) 221, 402, 531
BsiSI CCGG 3 cut(s) 124, 821, 999
BslFI GGGAC 3 cut(s) 506, 751, 804
BslI CCNNNNNNNGG 4 cut(s) 217, 228, 739, 851
BsmAI GTCTC 3 cut(s) 352, 405, 464
BsmFI GGGAC 3 cut(s) 506, 751, 804
BsnI GGCC 3 cut(s) 221, 402, 531
Bso31I GGTCTC 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 3 cut(s) 233, 403, 927
BspANI GGCC 3 cut(s) 221, 402, 531
BspCNI CTCAG 2 cut(s) 187, 640
BspLI GGNNCC 4 cut(s) 9, 354, 425, 669
BspMAI CTGCAG 1 cut(s) 1019
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 5 cut(s) 268, 269, 418, 431, 917
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 3 cut(s) 20, 106, 334
BsrI ACTGG 4 cut(s) 388, 671, 745, 845
BssECI CCNNGG 3 cut(s) 278, 316, 985
BssMI GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 3 cut(s) 137, 620, 725
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 119, 400
BstDEI CTNAG 2 cut(s) 174, 648
BstDSI CCRYGG 2 cut(s) 316, 985
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 575
BstKTI GATC 8 cut(s) 263, 277, 369, 426, 508, 627, 654, 925
BstMAI GTCTC 3 cut(s) 352, 405, 464
BstMBI GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
BstNI CCWGG 1 cut(s) 831
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 829
BstSFI CTRYAG 2 cut(s) 714, 1015
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 993
BstV2I GAAGAC 1 cut(s) 987
BstX2I RGATCY 3 cut(s) 274, 423, 922
BstYI RGATCY 3 cut(s) 274, 423, 922
BsuRI GGCC 3 cut(s) 221, 402, 531
BtgI CCRYGG 2 cut(s) 316, 985
BtsCI GGATG 1 cut(s) 575
BtsIMutI CAGTG 4 cut(s) 381, 625, 678, 852
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 119, 400
Cfr13I GGNCC 3 cut(s) 7, 352, 742
CseI GACGC 2 cut(s) 801, 981
Csp6I GTAC 3 cut(s) 127, 571, 960
CviAII CATG 7 cut(s) 51, 62, 77, 317, 420, 655, 893
CviQI GTAC 3 cut(s) 127, 571, 960
DdeI CTNAG 2 cut(s) 174, 648
DpnI GATC 8 cut(s) 262, 276, 368, 425, 507, 626, 653, 924
DpnII GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
DraI TTTAAA 1 cut(s) 205
EaeI YGGCCR 2 cut(s) 400, 529
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 3 cut(s) 7, 352, 742
Eco57I CTGAAG 2 cut(s) 162, 939
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 7 cut(s) 54, 65, 80, 320, 423, 658, 896
FaqI GGGAC 3 cut(s) 506, 751, 804
FatI CATG 7 cut(s) 50, 61, 76, 316, 419, 654, 892
FauI CCCGC 1 cut(s) 934
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 403, 982
FokI GGATG 1 cut(s) 562
Fsp4HI GCNGC 2 cut(s) 403, 982
FspBI CTAG 3 cut(s) 272, 375, 408
GluI GCNGC 2 cut(s) 403, 982
HaeIII GGCC 3 cut(s) 221, 402, 531
HapII CCGG 3 cut(s) 124, 821, 999
HgaI GACGC 2 cut(s) 801, 981
Hin1II CATG 7 cut(s) 54, 65, 80, 320, 423, 658, 896
HincII GTYRAC 2 cut(s) 606, 661
HindII GTYRAC 2 cut(s) 606, 661
HinfI GANTC 7 cut(s) 106, 251, 693, 783, 817, 834, 1008
HpaII CCGG 3 cut(s) 124, 821, 999
HphI GGTGA 3 cut(s) 305, 500, 869
Hpy166II GTNNAC 4 cut(s) 381, 519, 606, 661
Hpy188I TCNGA 7 cut(s) 84, 177, 279, 352, 366, 580, 919
Hpy188III TCNNGA 5 cut(s) 140, 272, 551, 592, 628
Hpy8I GTNNAC 4 cut(s) 381, 519, 606, 661
Hpy99I CGWCG 1 cut(s) 530
HpyCH4III ACNGT 3 cut(s) 137, 620, 725
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 4 cut(s) 61, 900, 981, 1017
HpyF3I CTNAG 2 cut(s) 174, 648
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 7 cut(s) 54, 65, 80, 320, 423, 658, 896
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 993
LweI GCATC 1 cut(s) 104
MaeI CTAG 3 cut(s) 272, 375, 408
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 2 cut(s) 628, 673
MalI GATC 8 cut(s) 262, 276, 368, 425, 507, 626, 653, 924
MboI GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
MboII GAAGA 7 cut(s) 155, 625, 695, 870, 872, 932, 987
MflI RGATCY 3 cut(s) 274, 423, 922
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 7 cut(s) 33, 183, 264, 300, 458, 540, 707
MlyI GAGTC 3 cut(s) 100, 843, 1002
MmeI TCCRAC 1 cut(s) 603
MnlI CCTC 8 cut(s) 28, 211, 273, 452, 521, 558, 733, 848
MseI TTAA 5 cut(s) 204, 447, 539, 759, 813
MspI CCGG 3 cut(s) 124, 821, 999
MspR9I CCNGG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 831
NcoI CCATGG 1 cut(s) 316
NdeII GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
NlaIII CATG 7 cut(s) 54, 65, 80, 320, 423, 658, 896
NlaIV GGNNCC 4 cut(s) 9, 354, 425, 669
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 628, 673
NspI RCATGY 1 cut(s) 65
PfeI GAWTC 4 cut(s) 251, 693, 783, 817
PkrI GCNGC 2 cut(s) 404, 983
PleI GAGTC 3 cut(s) 100, 842, 1002
PpsI GAGTC 3 cut(s) 100, 842, 1002
PpuMI RGGWCCY 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 4 cut(s) 9, 354, 425, 669
PspPI GGNCC 3 cut(s) 7, 352, 742
PspPPI RGGWCCY 1 cut(s) 7
PstI CTGCAG 1 cut(s) 1019
PsuI RGATCY 3 cut(s) 274, 423, 922
RsaI GTAC 3 cut(s) 128, 572, 961
RsaNI GTAC 3 cut(s) 127, 571, 960
SaqAI TTAA 5 cut(s) 204, 447, 539, 759, 813
SatI GCNGC 2 cut(s) 403, 982
Sau3AI GATC 8 cut(s) 260, 274, 366, 423, 505, 624, 651, 922
Sau96I GGNCC 3 cut(s) 7, 352, 742
SchI GAGTC 3 cut(s) 100, 843, 1002
ScrFI CCNGG 1 cut(s) 831
SduI GDGCHC 1 cut(s) 152
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 2 cut(s) 714, 1015
SinI GGWCC 3 cut(s) 7, 352, 742
SmlI CTYRAG 3 cut(s) 467, 512, 549
SmoI CTYRAG 3 cut(s) 467, 512, 549
Sse9I AATT 7 cut(s) 33, 183, 264, 300, 458, 540, 707
SsiI CCGC 3 cut(s) 233, 403, 927
SspMI CTAG 3 cut(s) 272, 375, 408
StyD4I CCNGG 1 cut(s) 829
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 3 cut(s) 137, 620, 725
TaiI ACGT 1 cut(s) 666
TaqI TCGA 3 cut(s) 132, 525, 777
TasI AATT 7 cut(s) 33, 183, 264, 300, 458, 540, 707
TatI WGTACW 1 cut(s) 959
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 4 cut(s) 251, 693, 783, 817
Tru1I TTAA 5 cut(s) 204, 447, 539, 759, 813
Tru9I TTAA 5 cut(s) 204, 447, 539, 759, 813
TscAI CASTG 4 cut(s) 388, 625, 678, 852
TseFI GTSAC 2 cut(s) 628, 673
TseI GCWGC 1 cut(s) 981
Tsp45I GTSAC 2 cut(s) 628, 673
TspDTI ATGAA 3 cut(s) 39, 274, 345
TspRI CASTG 4 cut(s) 388, 625, 678, 852
VpaK11BI GGWCC 3 cut(s) 7, 352, 742
VspI ATTAAT 1 cut(s) 759
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 2 cut(s) 183, 458
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 1 cut(s) 65
XspI CTAG 3 cut(s) 272, 375, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.