Prupe.4G188500_v2.0.a1

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017497
Physical Location & Seq
Reverse (-)
11220929 .. 11222217
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G188500.1

Sequence Viewer

Length: 867 bp
GCAGCATTTCAAGCTAAAGCATACACTTCTCTCCACTGTACCAACCCAGCAAGCCGATGCTATGTTGACTGTGATTCACCTATTTCCAAGGCCCAATGCAAACATAAGATCACATTCTTTCCTTCATATCATTTTGTTCATTTTGTTTACCGTAAGCCAAACTGCAATAGCCCTGGATCAGCATGCTATGATCCCCGCTTCATTGGTGGTGATGGCATTGTTTTCTATTTCCATGGCAAGAGCAACCAACAGTTCAGCTTAGTCTCAGACAGAAACCTCCAGATCAATGATCGCTTCACCCTGGGAATGCTTTTCAGCTCTCACAGTTTCTCTGTAGAAGCCACCAAAGTGGGTACTTGGGACAACCAAATTGACCACCTAAAGTTCACTTACAATGGAAACGATGTAGTTTTAGAAGAGGCCTATCCCTCCACTTGGTACTCTCCCGAAAAAGATGTTAAAGTTGAGAGAATATCAAGCAGGAACAGTGTTATTGTGTCCCTTAAGCATGTTGCTCAGAGTATGATCAATGTGGTGCCAGTGACCAAAGAAGATGATTGGATCCACAACTATCAAGTGCCTTCTGAAGACTGTTTTGCCCACTTGGAATTCCAGTTTAAGTTCTTTGCTCTGTCCCCAAAAGTTGAGGGAGTGCTTAGCAAAGCCTGGATGGCAATGCCAGTTGTGGGGGGTGAAGACGAGTATCAAACCTCATCACTTCTATGGGCAGATTGTGTTTCTTGTATGTTCTCGCCACAGAAATGTGTGGCAGAGAAAGAAGGGTCATCAGCAGTTGTGGATTGTGTCACACTTTACTGCACCAGAAGATCCTCCTTAGGAGGATACGGGATTGTTTGCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

289

Amino Acids

32.42

Weight (kDa)

6.85

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27400 AT5G54370
malus_domestica MD11G1238300.v1.1
prunus_persica Prupe.4G188500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0035121
rosa_multiflora Rmu_sc0000879.1_g000008 Rmu_sc0005362.1_g000004
rosa_rugosa Rorug05G0150200
rosa_samantha Rh5AG243000 Rh5BG242600 Rh5CG274200 Rh5DG251300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 535
AciI CCGC 1 cut(s) 196
AclWI GGATC 5 cut(s) 184, 185, 556, 569, 822
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 606
AfaI GTAC 3 cut(s) 40, 355, 440
AfiI CCNNNNNNNGG 2 cut(s) 435, 686
AflII CTTAAG 1 cut(s) 503
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 3 cut(s) 172, 300, 665
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 3 cut(s) 14, 258, 318
AluI AGCT 3 cut(s) 14, 258, 318
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 5 cut(s) 184, 185, 556, 569, 822
AoxI GGCC 2 cut(s) 90, 420
ApeKI GCWGC 1 cut(s) 2
ApoI RAATTY 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 4 cut(s) 69, 221, 289, 704
AxyI CCTNAGG 1 cut(s) 835
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 594, 702
BbvI GCAGC 1 cut(s) 14
BccI CCATC 2 cut(s) 206, 664
BciT130I CCWGG 3 cut(s) 174, 302, 667
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 503
BfuI GTATCC 1 cut(s) 836
BglI GCCNNNNNGGC 1 cut(s) 671
BisI GCNGC 1 cut(s) 3
BlpI GCTNAGC 1 cut(s) 656
BlsI GCNGC 1 cut(s) 4
Bme1390I CCNGG 3 cut(s) 174, 302, 667
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 537, 563
BmrFI CCNGG 3 cut(s) 174, 302, 667
BmsI GCATC 1 cut(s) 47
BpiI GAAGAC 2 cut(s) 594, 702
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 656
BsaJI CCNNGG 5 cut(s) 87, 172, 232, 300, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 435, 686
Bse1I ACTGG 3 cut(s) 539, 613, 680
Bse21I CCTNAGG 1 cut(s) 835
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 3 cut(s) 174, 302, 667
BseDI CCNNGG 5 cut(s) 87, 172, 232, 300, 301
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 2 cut(s) 435, 686
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 2 cut(s) 279, 530
BseNI ACTGG 3 cut(s) 539, 613, 680
BseXI GCAGC 1 cut(s) 14
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 802
BshFI GGCC 2 cut(s) 92, 422
BshNI GGYRCC 1 cut(s) 535
BslFI GGGAC 3 cut(s) 374, 484, 619
BslI CCNNNNNNNGG 2 cut(s) 435, 686
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 3 cut(s) 374, 484, 619
BsmI GAATGC 1 cut(s) 312
BsnI GGCC 2 cut(s) 92, 422
Bsp143I GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
Bsp1720I GCTNAGC 1 cut(s) 656
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 196
BspANI GGCC 2 cut(s) 92, 422
BspCNI CTCAG 2 cut(s) 278, 529
BspLI GGNNCC 2 cut(s) 537, 563
BspPI GGATC 5 cut(s) 184, 185, 556, 569, 822
BspT107I GGYRCC 1 cut(s) 535
BspTI CTTAAG 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 3 cut(s) 539, 613, 680
BssECI CCNNGG 5 cut(s) 87, 172, 232, 300, 301
BssMI GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
BssT1I CCWWGG 2 cut(s) 87, 232
Bst2UI CCWGG 3 cut(s) 174, 302, 667
Bst4CI ACNGT 7 cut(s) 38, 71, 152, 252, 326, 488, 593
Bst6I CTCTTC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 52, 184
BstDEI CTNAG 5 cut(s) 259, 265, 516, 656, 835
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 675
BstKTI GATC 8 cut(s) 111, 179, 193, 285, 292, 528, 564, 830
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
BstMWI GCNNNNNNNGC 2 cut(s) 11, 671
BstNI CCWGG 3 cut(s) 174, 302, 667
BstNSI RCATGY 2 cut(s) 186, 512
BstSCI CCNGG 3 cut(s) 172, 300, 665
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 14
BstV2I GAAGAC 2 cut(s) 594, 702
BstX2I RGATCY 2 cut(s) 561, 827
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 2 cut(s) 561, 827
Bsu36I CCTNAGG 1 cut(s) 835
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 2 cut(s) 92, 422
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 3 cut(s) 34, 493, 546
Cac8I GCNNGC 2 cut(s) 52, 184
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 3 cut(s) 39, 354, 439
CviAII CATG 3 cut(s) 183, 233, 509
CviQI GTAC 3 cut(s) 39, 354, 439
DdeI CTNAG 5 cut(s) 259, 265, 516, 656, 835
DpnI GATC 8 cut(s) 110, 178, 192, 284, 291, 527, 563, 829
DpnII GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 87, 232
Eco147I AGGCCT 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 606
Eco81I CCTNAGG 1 cut(s) 835
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 3 cut(s) 172, 300, 665
EcoT14I CCWWGG 2 cut(s) 87, 232
ErhI CCWWGG 2 cut(s) 87, 232
FaeI CATG 3 cut(s) 186, 236, 512
FaqI GGGAC 3 cut(s) 374, 484, 619
FatI CATG 3 cut(s) 182, 232, 508
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 1 cut(s) 3
FokI GGATG 1 cut(s) 682
Fsp4HI GCNGC 1 cut(s) 3
GluI GCNGC 1 cut(s) 3
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 2 cut(s) 92, 422
Hin1II CATG 3 cut(s) 186, 236, 512
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 74
HphI GGTGA 4 cut(s) 69, 221, 289, 704
Hpy166II GTNNAC 3 cut(s) 67, 148, 387
Hpy188I TCNGA 3 cut(s) 268, 519, 586
Hpy188III TCNNGA 2 cut(s) 280, 446
Hpy8I GTNNAC 3 cut(s) 67, 148, 387
HpyAV CCTTC 3 cut(s) 132, 591, 773
HpyCH4III ACNGT 7 cut(s) 38, 71, 152, 252, 326, 488, 593
HpyCH4V TGCA 4 cut(s) 99, 165, 819, 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 671
HpyF3I CTNAG 5 cut(s) 259, 265, 516, 656, 835
Hsp92II CATG 3 cut(s) 186, 236, 512
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 541, 805
MalI GATC 8 cut(s) 110, 178, 192, 284, 291, 527, 563, 829
MboI GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
MboII GAAGA 5 cut(s) 428, 563, 599, 707, 837
MflI RGATCY 2 cut(s) 561, 827
MluCI AATT 2 cut(s) 369, 608
MnlI CCTC 7 cut(s) 287, 412, 439, 640, 721, 833, 841
MseI TTAA 3 cut(s) 459, 504, 618
MslI CAYNNNNRTG 3 cut(s) 347, 721, 760
MspCI CTTAAG 1 cut(s) 503
MspR9I CCNGG 3 cut(s) 174, 302, 667
Mva1269I GAATGC 1 cut(s) 312
MvaI CCWGG 3 cut(s) 174, 302, 667
MwoI GCNNNNNNNGC 2 cut(s) 11, 671
NcoI CCATGG 1 cut(s) 232
NdeII GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
NlaIII CATG 3 cut(s) 186, 236, 512
NlaIV GGNNCC 2 cut(s) 537, 563
NmuCI GTSAC 2 cut(s) 541, 805
NspI RCATGY 2 cut(s) 186, 512
OliI CACNNNNGTG 1 cut(s) 347
PaeI GCATGC 1 cut(s) 186
PasI CCCWGGG 1 cut(s) 301
PceI AGGCCT 1 cut(s) 422
PctI GAATGC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 4
Psp6I CCWGG 3 cut(s) 172, 300, 665
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 3 cut(s) 172, 300, 665
PspN4I GGNNCC 2 cut(s) 537, 563
PspPI GGNCC 1 cut(s) 91
PsuI RGATCY 2 cut(s) 561, 827
RsaI GTAC 3 cut(s) 40, 355, 440
RsaNI GTAC 3 cut(s) 39, 354, 439
RseI CAYNNNNRTG 3 cut(s) 347, 721, 760
SaqAI TTAA 3 cut(s) 459, 504, 618
SatI GCNGC 1 cut(s) 3
Sau3AI GATC 8 cut(s) 108, 176, 190, 282, 289, 525, 561, 827
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 3 cut(s) 174, 302, 667
SetI ASST 7 cut(s) 16, 82, 260, 279, 320, 381, 713
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 3 cut(s) 347, 721, 760
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 186
Sse9I AATT 2 cut(s) 369, 608
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 1 cut(s) 196
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 3 cut(s) 172, 300, 665
StyI CCWWGG 2 cut(s) 87, 232
TaaI ACNGT 7 cut(s) 38, 71, 152, 252, 326, 488, 593
TasI AATT 2 cut(s) 369, 608
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 459, 504, 618
Tru9I TTAA 3 cut(s) 459, 504, 618
TscAI CASTG 3 cut(s) 41, 493, 546
TseFI GTSAC 2 cut(s) 541, 805
TseI GCWGC 1 cut(s) 2
Tsp45I GTSAC 2 cut(s) 541, 805
TspDTI ATGAA 3 cut(s) 114, 128, 190
TspRI CASTG 3 cut(s) 41, 493, 546
Vha464I CTTAAG 1 cut(s) 503
XapI RAATTY 1 cut(s) 608
XceI RCATGY 2 cut(s) 186, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.