AT5G54370

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017497
Physical Location & Seq
Forward (+)
22075277 .. 22076819
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54370.1

Sequence Viewer

Length: 1014 bp
ATGGAGATCTCAAAAACCCTTTTGCTAGTGATTTCTCTGGTGGCTGCAACTTGTTTCTTGCAAGCCAAGGCAGCTGGAGTTTATTGTAGTAACCCTTACACTCGATGTTACCGCAAGTACATTAGGTGTCCAGAGGAATGTCCAAGCAAAACCGCTATGAACTCCAAGAACAAAGTGTGCTACGCCGATTGCGATAGACCCACTTGCAAATCCCAATGCCGCATGAGGAAACCAAACTGCAACAGACCTGGATCAGCTTGTTATGACCCGAGGTTCATTGGAGGAGACGGCATTGTGTTCTACTTCCATGGAAAGAGCAATGAAGAGTTTAGCCTCGTCTCTGACTCTGACCTTCAGATCAATGGTAGGTTCATTGGTCACAGACCCGCTGGTCGTGCCAGAGACTTCACATGGATCCAAGCTCTAGGATTCCTTTTCAACTCCAACAAATTCTCCCTCGAAGCCGCGAAAACCGCCTCATGGGACAACGAAATCGACCATCTCAAATTCAGTTACGATGGCCAAGATTTATCTGTTCCAGAAGAAACTCTCTCCACCTGGTACTCACCAAACAAGGACATCAAGATCGAGAGAGTGAGTATGAGAAACAGCGTGATCGTGACAATCAAAGACAAAGCCGAGATCATGATCAATGTGGTTCCAGTGACAAAAGAAGACGACAGAATCCATAGCTACAAAGTACCATCAGATGATTGTTTTGCACATCTTGAGGTTCAATTCAGATTCTTTAACCTTTCACCTAAGGTTGATGGAATCTTGGGACGAACCTACAGGCCCGATTTCCAAAATCCGGCTAAGCCTGGAGTCGCAATGCCAGTTGTTGGTGGTGAAGACAGCTTCAAGACTTCTTCTCTACTCTCCAATGACTGTAAAACTTGCATTTTCTCTGAGTCACAAGCAGAGATTGATTCTGTTAAGTCAGAGATTGAATATGCAACTTTGGATTGTACCCGTGGAGCGTCTTCTGGTTACGGTATCGTGTGCAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

337

Amino Acids

37.82

Weight (kDa)

8.07

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 246 - 302 5.3e-27 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27400 AT5G54370
malus_domestica MD11G1238300.v1.1
prunus_persica Prupe.4G188500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0035121
rosa_multiflora Rmu_sc0000879.1_g000008 Rmu_sc0005362.1_g000004
rosa_rugosa Rorug05G0150200
rosa_samantha Rh5AG243000 Rh5BG242600 Rh5CG274200 Rh5DG251300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 842
AccII CGCG 1 cut(s) 467
AciI CCGC 6 cut(s) 112, 153, 220, 387, 465, 474
AclWI GGATC 3 cut(s) 259, 409, 422
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 2 cut(s) 449, 506
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 4 cut(s) 119, 563, 702, 970
AfiI CCNNNNNNNGG 3 cut(s) 480, 811, 842
AgsI TTSAA 4 cut(s) 439, 737, 862, 950
AjnI CCWGG 3 cut(s) 247, 557, 820
AluBI AGCT 5 cut(s) 74, 257, 422, 693, 858
AluI AGCT 5 cut(s) 74, 257, 422, 693, 858
Alw26I GTCTC 3 cut(s) 279, 343, 396
AlwI GGATC 3 cut(s) 259, 409, 422
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 2 cut(s) 520, 794
ApeKI GCWGC 2 cut(s) 44, 71
ApoI RAATTY 2 cut(s) 449, 506
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 3 cut(s) 558, 750, 860
AvaI CYCGRG 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 762
BalI TGGCCA 1 cut(s) 522
BamHI GGATCC 1 cut(s) 414
BbsI GAAGAC 3 cut(s) 681, 858, 975
BbvI GCAGC 2 cut(s) 31, 83
BccI CCATC 4 cut(s) 507, 512, 712, 764
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 3 cut(s) 249, 559, 822
BclI TGATCA 1 cut(s) 648
BcoDI GTCTC 3 cut(s) 279, 343, 396
BfaI CTAG 2 cut(s) 26, 425
BfmI CTRYAG 1 cut(s) 790
BglII AGATCT 1 cut(s) 6
BisI GCNGC 4 cut(s) 45, 72, 220, 465
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 4 cut(s) 46, 73, 221, 466
Bme1390I CCNGG 3 cut(s) 249, 559, 822
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 2 cut(s) 416, 660
BmrFI CCNGG 3 cut(s) 249, 559, 822
BpiI GAAGAC 3 cut(s) 681, 858, 975
BpmI CTGGAG 2 cut(s) 96, 843
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 647
BsaJI CCNNGG 4 cut(s) 66, 269, 307, 973
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 3 cut(s) 480, 811, 842
Bse1I ACTGG 2 cut(s) 662, 836
Bse21I CCTNAGG 1 cut(s) 762
Bse3DI GCAATG 2 cut(s) 325, 837
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 3 cut(s) 249, 559, 822
BseDI CCNNGG 4 cut(s) 66, 269, 307, 973
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 3 cut(s) 480, 811, 842
BseMI GCAATG 2 cut(s) 325, 837
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 2 cut(s) 662, 836
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 31, 83
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 522, 796
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 2 cut(s) 497, 795
BslI CCNNNNNNNGG 3 cut(s) 480, 811, 842
BsmAI GTCTC 3 cut(s) 279, 343, 396
BsmBI CGTCTC 2 cut(s) 279, 343
BsmFI GGGAC 2 cut(s) 497, 795
BsnI GGCC 2 cut(s) 522, 796
BsoBI CYCGRG 1 cut(s) 268
Bsp143I GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
Bsp1720I GCTNAGC 1 cut(s) 816
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 6 cut(s) 112, 153, 220, 387, 465, 474
BspANI GGCC 2 cut(s) 522, 796
BspCNI CTCAG 1 cut(s) 901
BspFNI CGCG 1 cut(s) 467
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 2 cut(s) 416, 660
BspPI GGATC 3 cut(s) 259, 409, 422
BsrDI GCAATG 2 cut(s) 325, 837
BsrI ACTGG 2 cut(s) 662, 836
BssECI CCNNGG 4 cut(s) 66, 269, 307, 973
BssMI GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
BssT1I CCWWGG 2 cut(s) 66, 307
Bst2UI CCWGG 3 cut(s) 249, 559, 822
Bst4CI ACNGT 2 cut(s) 890, 995
Bst6I CTCTTC 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 3 cut(s) 762, 816, 909
BstDSI CCRYGG 2 cut(s) 307, 973
BstFNI CGCG 1 cut(s) 467
BstKTI GATC 8 cut(s) 9, 254, 360, 417, 588, 618, 645, 651
BstMAI GTCTC 3 cut(s) 279, 343, 396
BstMBI GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
BstMWI GCNNNNNNNGC 3 cut(s) 71, 395, 473
BstNI CCWGG 3 cut(s) 249, 559, 822
BstSCI CCNGG 3 cut(s) 247, 557, 820
BstSFI CTRYAG 1 cut(s) 790
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 31, 83
BstV2I GAAGAC 3 cut(s) 681, 858, 975
BstX2I RGATCY 2 cut(s) 6, 414
BstYI RGATCY 2 cut(s) 6, 414
Bsu36I CCTNAGG 1 cut(s) 762
BsuRI GGCC 2 cut(s) 522, 796
BtgI CCRYGG 2 cut(s) 307, 973
BtsIMutI CAGTG 1 cut(s) 669
Cac8I GCNNGC 1 cut(s) 63
CciI TCATGA 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 795
CseI GACGC 1 cut(s) 969
CsiI ACCWGGT 1 cut(s) 557
Csp6I GTAC 4 cut(s) 118, 562, 701, 969
CviAII CATG 5 cut(s) 223, 308, 411, 480, 646
CviQI GTAC 4 cut(s) 118, 562, 701, 969
DdeI CTNAG 3 cut(s) 762, 816, 909
DpnI GATC 8 cut(s) 8, 253, 359, 416, 587, 617, 644, 650
DpnII GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
DrdI GACNNNNNNGTC 1 cut(s) 390
DseDI GACNNNNNNGTC 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 66, 307
Eco57I CTGAAG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 268
EcoRII CCWGG 3 cut(s) 247, 557, 820
EcoT14I CCWWGG 2 cut(s) 66, 307
ErhI CCWWGG 2 cut(s) 66, 307
Esp3I CGTCTC 2 cut(s) 279, 343
FaeI CATG 5 cut(s) 226, 311, 414, 483, 649
FaqI GGGAC 2 cut(s) 497, 795
FatI CATG 5 cut(s) 222, 307, 410, 479, 645
FauI CCCGC 1 cut(s) 394
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 4 cut(s) 45, 72, 220, 465
Fsp4HI GCNGC 4 cut(s) 45, 72, 220, 465
FspBI CTAG 2 cut(s) 26, 425
GluI GCNGC 4 cut(s) 45, 72, 220, 465
GsuI CTGGAG 2 cut(s) 96, 843
HaeIII GGCC 2 cut(s) 522, 796
HapII CCGG 1 cut(s) 812
HgaI GACGC 1 cut(s) 969
Hin1II CATG 5 cut(s) 226, 311, 414, 483, 649
HinfI GANTC 8 cut(s) 344, 429, 684, 744, 774, 825, 911, 929
HpaII CCGG 1 cut(s) 812
HphI GGTGA 3 cut(s) 558, 750, 860
Hpy188I TCNGA 7 cut(s) 343, 349, 357, 709, 743, 910, 943
Hpy188III TCNNGA 8 cut(s) 131, 539, 583, 589, 619, 646, 728, 862
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 2 cut(s) 890, 995
HpyCH4V TGCA 8 cut(s) 47, 61, 207, 240, 722, 900, 956, 1005
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 395, 473
HpyF3I CTNAG 3 cut(s) 762, 816, 909
Hsp92II CATG 5 cut(s) 226, 311, 414, 483, 649
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
LmnI GCTCC 1 cut(s) 977
Lsp1109I GCAGC 2 cut(s) 31, 83
MabI ACCWGGT 1 cut(s) 557
MaeI CTAG 2 cut(s) 26, 425
MaeIII GTNAC 8 cut(s) 89, 107, 377, 512, 619, 664, 912, 989
MalI GATC 8 cut(s) 8, 253, 359, 416, 587, 617, 644, 650
MboI GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
MboII GAAGA 6 cut(s) 335, 554, 686, 861, 863, 975
MflI RGATCY 2 cut(s) 6, 414
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 3 cut(s) 449, 506, 737
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 3 cut(s) 338, 834, 920
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 8 cut(s) 127, 219, 264, 275, 344, 467, 487, 724
Mox20I TGGCCA 1 cut(s) 522
MscI TGGCCA 1 cut(s) 522
MseI TTAA 2 cut(s) 750, 936
Msp20I TGGCCA 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 74, 389
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 3 cut(s) 249, 559, 822
MvaI CCWGG 3 cut(s) 249, 559, 822
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 3 cut(s) 71, 395, 473
NcoI CCATGG 1 cut(s) 307
NdeII GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
NlaIII CATG 5 cut(s) 226, 311, 414, 483, 649
NlaIV GGNNCC 2 cut(s) 416, 660
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 4 cut(s) 377, 619, 664, 912
PagI TCATGA 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 5 cut(s) 429, 684, 744, 774, 929
PflMI CCANNNNNTGG 1 cut(s) 842
PkrI GCNGC 4 cut(s) 46, 73, 221, 466
PleI GAGTC 3 cut(s) 338, 833, 919
PpsI GAGTC 3 cut(s) 338, 833, 919
Psp6I CCWGG 3 cut(s) 247, 557, 820
PspGI CCWGG 3 cut(s) 247, 557, 820
PspN4I GGNNCC 2 cut(s) 416, 660
PspPI GGNCC 1 cut(s) 795
PsuI RGATCY 2 cut(s) 6, 414
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 4 cut(s) 119, 563, 702, 970
RsaNI GTAC 4 cut(s) 118, 562, 701, 969
SaqAI TTAA 2 cut(s) 750, 936
SatI GCNGC 4 cut(s) 45, 72, 220, 465
Sau3AI GATC 8 cut(s) 6, 251, 357, 414, 585, 615, 642, 648
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 3 cut(s) 338, 834, 920
ScrFI CCNGG 3 cut(s) 249, 559, 822
SexAI ACCWGGT 1 cut(s) 557
SfcI CTRYAG 1 cut(s) 790
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 3 cut(s) 449, 506, 737
SsiI CCGC 6 cut(s) 112, 153, 220, 387, 465, 474
SspMI CTAG 2 cut(s) 26, 425
StyD4I CCNGG 3 cut(s) 247, 557, 820
StyI CCWWGG 2 cut(s) 66, 307
TaaI ACNGT 2 cut(s) 890, 995
TaqI TCGA 4 cut(s) 103, 459, 495, 588
TasI AATT 3 cut(s) 449, 506, 737
TatI WGTACW 1 cut(s) 117
TauI GCSGC 2 cut(s) 222, 467
TfiI GAWTC 5 cut(s) 429, 684, 744, 774, 929
Tru1I TTAA 2 cut(s) 750, 936
Tru9I TTAA 2 cut(s) 750, 936
TscAI CASTG 1 cut(s) 669
TseFI GTSAC 4 cut(s) 377, 619, 664, 912
TseI GCWGC 2 cut(s) 44, 71
Tsp45I GTSAC 4 cut(s) 377, 619, 664, 912
TspDTI ATGAA 4 cut(s) 173, 265, 336, 361
TspRI CASTG 1 cut(s) 669
Van91I CCANNNNNTGG 1 cut(s) 842
XapI RAATTY 2 cut(s) 449, 506
XspI CTAG 2 cut(s) 26, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.