Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000879.1

Orthogroup ID

OG0017497

Physical Location & Seq

Genomic Coordinates Forward (+)

27822 .. 28766

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000879.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgtctatactaccactccttaattactacaaggctatagagcgcaaaccaaactgcaatagccctggatcagcatgctatgatccacgtttcatcggtggtgatggcattgttttctatttccacggcaagagcaacgagcagttcagcttagtctcagacaaaaacctccagatcaatggccgcttcattggccacagaccagccggccgtgctcgtgactatacctggattcaggcccttggagtccttctgaactcccagagtttctctgtggaagccaccaaagtggctacatggaacaaccaaattgaccatctgagattcactcacaatggaaatgatgtagttctggaagaagggtatctttccacttggtactcaccagataaagatatcaaagttgagagaatagcaagcaagaacagtgtgatagtgtcgctcaaggatgtagctgagattatgatcaatgttgtaccagtgaccaaagaagatgataggattcacaactaccaagtacctgaaaatgactgctttgcccatttggaagcccagttcaagttctttgctctgtccccaaaagttgagggagttcttggaaggacttacaggcccgattttgagaacccggcaaagcctggagtggcaatgccagttattggaggtgaagagaagtacataaccacatcacttctctctgctgattgtgatacttgtgatttgttctcaaaggaaattagtgagtccgagaaagaaacttcagcaattgtggactatggtacactagactgtaccagaagatcctcaggagggtatgggattgtttgcaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

278

Amino Acids

31.08

Weight (kDa)

5.74

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27400 AT5G54370
malus_domestica	MD11G1238300.v1.1
prunus_persica	Prupe.4G188500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0035121
rosa_multiflora	Rmu_sc0000879.1_g000008 Rmu_sc0005362.1_g000004
rosa_rugosa	Rorug05G0150200
rosa_samantha	Rh5AG243000 Rh5BG242600 Rh5CG274200 Rh5DG251300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	659
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	3 cut(s)	76, 77, 795
AcoI	YGGCCR	3 cut(s)	181, 193, 208
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	6 cut(s)	380, 477, 519, 677, 781, 793
AfiI	CCNNNNNNNGG	2 cut(s)	659, 810
AgsI	TTSAA	1 cut(s)	559
AjnI	CCWGG	3 cut(s)	64, 227, 637
AleI	CACNNNNGTG	1 cut(s)	287
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	2 cut(s)	150, 455
AluI	AGCT	2 cut(s)	150, 455
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	3 cut(s)	76, 77, 795
AoxI	GGCC	5 cut(s)	181, 193, 208, 237, 611
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	238, 612
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	3 cut(s)	113, 375, 677
AxyI	CCTNAGG	1 cut(s)	805
BalI	TGGCCA	1 cut(s)	195
BauI	CACGAG	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	2 cut(s)	98, 324
BceAI	ACGGC	2 cut(s)	142, 195
BciT130I	CCWGG	3 cut(s)	66, 229, 639
BclI	TGATCA	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	4 cut(s)	66, 229, 629, 639
BmgT120I	GGNCC	2 cut(s)	238, 612
BmrFI	CCNGG	4 cut(s)	66, 229, 629, 639
BmrI	ACTGGG	1 cut(s)	547
BmuI	ACTGGG	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BpmI	CTGGAG	2 cut(s)	155, 660
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	629
BsaBI	GATNNNNATC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	64, 124, 241
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 810
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	479, 553, 653
Bse21I	CCTNAGG	1 cut(s)	805
Bse3DI	GCAATG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	464
BseBI	CCWGG	3 cut(s)	66, 229, 639
BseDI	CCNNGG	3 cut(s)	64, 124, 241
BseGI	GGATG	1 cut(s)	454
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	659, 810
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	4 cut(s)	171, 311, 447, 819
BseNI	ACTGG	3 cut(s)	479, 553, 653
BseX3I	CGGCCG	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	5 cut(s)	183, 195, 210, 239, 613
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	207, 629
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	2 cut(s)	659, 810
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	5 cut(s)	183, 195, 210, 239, 613
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	5 cut(s)	68, 82, 174, 465, 800
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	5 cut(s)	183, 195, 210, 239, 613
BspCNI	CTCAG	4 cut(s)	170, 312, 448, 818
BspPI	GGATC	3 cut(s)	76, 77, 795
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	3 cut(s)	479, 553, 653
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	64, 124, 241
BssMI	GATC	5 cut(s)	68, 82, 174, 465, 800
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	3 cut(s)	66, 229, 639
Bst4CI	ACNGT	2 cut(s)	428, 791
Bst6I	CTCTTC	1 cut(s)	663
BstC8I	GCNNGC	3 cut(s)	76, 208, 418
BstDEI	CTNAG	5 cut(s)	151, 157, 320, 456, 805
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	5 cut(s)	71, 85, 177, 468, 803
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	5 cut(s)	68, 82, 174, 465, 800
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 212
BstNI	CCWGG	3 cut(s)	66, 229, 639
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	4 cut(s)	64, 227, 627, 637
BstSFI	CTRYAG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	800
BstXI	CCANNNNNNTGG	2 cut(s)	179, 289
BstYI	RGATCY	1 cut(s)	800
BstZI	CGGCCG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	805
BsuRI	GGCC	5 cut(s)	183, 195, 210, 239, 613
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	433, 486
Cac8I	GCNNGC	3 cut(s)	76, 208, 418
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	238, 612
Csp6I	GTAC	6 cut(s)	379, 476, 518, 676, 780, 792
CviAII	CATG	2 cut(s)	75, 297
CviQI	GTAC	6 cut(s)	379, 476, 518, 676, 780, 792
DdeI	CTNAG	5 cut(s)	151, 157, 320, 456, 805
DpnI	GATC	5 cut(s)	70, 84, 176, 467, 802
DpnII	GATC	5 cut(s)	68, 82, 174, 465, 800
EaeI	YGGCCR	3 cut(s)	181, 193, 208
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EclXI	CGGCCG	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	744
Eco81I	CCTNAGG	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	64, 227, 637
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	78, 300
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	2 cut(s)	74, 296
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	184
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	184
GsuI	CTGGAG	2 cut(s)	155, 660
HaeIII	GGCC	5 cut(s)	183, 195, 210, 239, 613
HapII	CCGG	2 cut(s)	207, 629
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	78, 300
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	5 cut(s)	232, 246, 324, 502, 743
HpaII	CCGG	2 cut(s)	207, 629
HphI	GGTGA	3 cut(s)	113, 375, 677
Hpy166II	GTNNAC	2 cut(s)	772, 782
Hpy188I	TCNGA	4 cut(s)	160, 255, 321, 748
Hpy188III	TCNNGA	4 cut(s)	172, 218, 353, 807
Hpy8I	GTNNAC	2 cut(s)	772, 782
HpyAV	CCTTC	3 cut(s)	260, 353, 594
HpyCH4III	ACNGT	2 cut(s)	428, 791
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	57, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 212
HpyF3I	CTNAG	5 cut(s)	151, 157, 320, 456, 805
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	78, 300
HspAI	GCGC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	5 cut(s)	68, 82, 174, 465, 800
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	218, 481
MalI	GATC	5 cut(s)	70, 84, 176, 467, 802
MboI	GATC	5 cut(s)	68, 82, 174, 465, 800
MboII	GAAGA	4 cut(s)	368, 503, 680, 810
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	800
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	4 cut(s)	22, 309, 735, 765
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	255, 752
MnlI	CCTC	5 cut(s)	179, 580, 656, 803, 814
Mox20I	TGGCCA	1 cut(s)	195
MroNI	GCCGGC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	2 cut(s)	207, 629
MspR9I	CCNGG	4 cut(s)	66, 229, 629, 639
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	3 cut(s)	66, 229, 639
MwoI	GCNNNNNNNGC	2 cut(s)	192, 212
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	5 cut(s)	68, 82, 174, 465, 800
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	78, 300
NmuCI	GTSAC	2 cut(s)	218, 481
NspI	RCATGY	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	3 cut(s)	232, 324, 502
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	1 cut(s)	185
PleI	GAGTC	2 cut(s)	254, 751
PpsI	GAGTC	2 cut(s)	254, 751
Psp6I	CCWGG	3 cut(s)	64, 227, 637
PspGI	CCWGG	3 cut(s)	64, 227, 637
PspPI	GGNCC	2 cut(s)	238, 612
PsuI	RGATCY	1 cut(s)	800
RsaI	GTAC	6 cut(s)	380, 477, 519, 677, 781, 793
RsaNI	GTAC	6 cut(s)	379, 476, 518, 676, 780, 792
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	5 cut(s)	68, 82, 174, 465, 800
Sau96I	GGNCC	2 cut(s)	238, 612
SchI	GAGTC	2 cut(s)	255, 752
ScrFI	CCNGG	4 cut(s)	66, 229, 629, 639
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	7 cut(s)	91, 152, 171, 230, 457, 523, 667
SfcI	CTRYAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	4 cut(s)	22, 309, 735, 765
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	4 cut(s)	64, 227, 627, 637
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	428, 791
TaiI	ACGT	1 cut(s)	91
TasI	AATT	4 cut(s)	22, 309, 735, 765
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	232, 324, 502
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	2 cut(s)	433, 486
TseFI	GTSAC	2 cut(s)	218, 481
Tsp45I	GTSAC	2 cut(s)	218, 481
TspDTI	ATGAA	2 cut(s)	82, 178
TspRI	CASTG	2 cut(s)	433, 486
Van91I	CCANNNNNTGG	1 cut(s)	659
XceI	RCATGY	1 cut(s)	78
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.