AT4G28290

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
14011080 .. 14012697
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28290.2

Sequence Viewer

Length: 243 bp
ATGAAGAAAACTGGAATCATCGCAGCCTCCATCTCTGTCGCGGCTTCTGCCACGGCGATCTCCGCCGGCTCTACCAACACCTCCGTGTCATTCTCTTCGCCGGAATCTAATCTCTCTCGTCAGGAGGCAAAGGAAAAACAGAGGAAGAAGAAGGGTTCGTCGGAAGATGGGGGAGATGAGAAGTTTGCTCCAAGGTTTGATGGGTTACGATTCATCGAGACGCTTGTTACTGCTCACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.47

Weight (kDa)

9.77

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019575)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28290 AT4G28290
malus_domestica MD09G1247900.v1.1 MD17G1240800.v1.1
prunus_persica Prupe.3G137400_v2.0.a1
pyrus_communis pycom09g16540 pycom17g24400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 41, 63
AleI CACNNNNGTG 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 227
BbvI GCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 38, 161, 194
BceAI ACGGC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 212
BisI GCNGC 2 cut(s) 24, 42
BlsI GCNGC 2 cut(s) 25, 43
BsaJI CCNNGG 2 cut(s) 51, 191
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 51, 191
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 41
BsiSI CCGG 2 cut(s) 66, 101
BsmAI GTCTC 1 cut(s) 212
BsmBI CGTCTC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 2 cut(s) 41, 63
BspFNI CGCG 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 51, 191
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 47, 62
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 65
CseI GACGC 1 cut(s) 229
CviJI RGCY 3 cut(s) 26, 44, 69
CviKI_1 RGCY 3 cut(s) 26, 44, 69
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 24, 42
Fsp4HI GCNGC 2 cut(s) 24, 42
GluI GCNGC 2 cut(s) 24, 42
HapII CCGG 2 cut(s) 66, 101
HgaI GACGC 1 cut(s) 229
HinfI GANTC 3 cut(s) 15, 104, 210
HpaII CCGG 2 cut(s) 66, 101
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 122, 217
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 62
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 79, 107, 114
Lsp1109I GCAGC 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 204, 226
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 5 cut(s) 16, 87, 157, 160, 176
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 37, 91, 118, 135
MroNI GCCGGC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 66, 101
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 47, 62
NaeI GCCGGC 1 cut(s) 67
NdeII GATC 1 cut(s) 57
NgoMIV GCCGGC 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 3 cut(s) 15, 104, 210
PkrI GCNGC 2 cut(s) 25, 43
RseI CAYNNNNRTG 1 cut(s) 83
SatI GCNGC 2 cut(s) 24, 42
Sau3AI GATC 1 cut(s) 57
SetI ASST 2 cut(s) 83, 197
SmiMI CAYNNNNRTG 1 cut(s) 83
SsiI CCGC 2 cut(s) 41, 63
StyI CCWWGG 1 cut(s) 191
TaqI TCGA 1 cut(s) 216
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 3 cut(s) 15, 104, 210
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 17, 202
TspGWI ACGGA 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.