MD17G1240800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
28997867 .. 28999024
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1240800.v1.1.491

Sequence Viewer

Length: 228 bp
ATGAAGAAGCCGGGCTTTCTAGCGGCCTCAGTCGCCGCCGCTTCTGCCACTGCTCTCTCCGCCACTTCTTCCTCTTCAAGCTTTGTGTCTGATTCAACCATGCGGTTCTCTCACCAGGAGGCTGGCTCTAAGAGAAATCAAGAAAAATCATCGGCTTCGACGGACAAATTTGCACCCAAGTTCGATGGGCTGAGATTTATTGAAACGCTGATTACTGCTCACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

7.94

Weight (kDa)

9.99

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019575)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28290 AT4G28290
malus_domestica MD09G1247900.v1.1 MD17G1240800.v1.1
prunus_persica Prupe.3G137400_v2.0.a1
pyrus_communis pycom09g16540 pycom17g24400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 23, 36, 39, 60, 103
AcsI RAATTY 1 cut(s) 167
AgsI TTSAA 3 cut(s) 78, 96, 203
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 104
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 1 cut(s) 12
BfaI CTAG 1 cut(s) 20
BisI GCNGC 3 cut(s) 24, 36, 39
BlsI GCNGC 3 cut(s) 25, 37, 40
Bme1390I CCNGG 2 cut(s) 12, 116
BmrFI CCNGG 2 cut(s) 12, 116
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpuMI CCSGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 42, 182
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 11
BsnI GGCC 1 cut(s) 26
BspACI CCGC 5 cut(s) 23, 36, 39, 60, 103
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 41, 183
Bst2UI CCWGG 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 28, 129, 191
BstMWI GCNNNNNNNGC 3 cut(s) 32, 44, 59
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 10, 114
BstXI CCANNNNNNTGG 1 cut(s) 122
BsuRI GGCC 1 cut(s) 26
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 124
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 10, 15, 26, 81, 122, 126, 155, 190
CviKI_1 RGCY 8 cut(s) 10, 15, 26, 81, 122, 126, 155, 190
DdeI CTNAG 3 cut(s) 28, 129, 191
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 24, 36, 39
Fsp4HI GCNGC 3 cut(s) 24, 36, 39
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 24, 36, 39
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 11
Hin1II CATG 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 140
Hpy99I CGWCG 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 44, 59
HpyF3I CTNAG 3 cut(s) 28, 129, 191
Hsp92II CATG 1 cut(s) 103
LpnPI CCDG 4 cut(s) 24, 101, 108, 128
MaeI CTAG 1 cut(s) 20
MboII GAAGA 3 cut(s) 16, 60, 66
MluCI AATT 1 cut(s) 167
MnlI CCTC 3 cut(s) 37, 82, 112
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 12, 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 32, 44, 59
NciI CCSGG 1 cut(s) 12
NlaIII CATG 1 cut(s) 103
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 25, 37, 40
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
SatI GCNGC 3 cut(s) 24, 36, 39
ScrFI CCNGG 2 cut(s) 12, 116
SetI ASST 1 cut(s) 83
Sse9I AATT 1 cut(s) 167
SsiI CCGC 5 cut(s) 23, 36, 39, 60, 103
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 10, 114
TaqI TCGA 2 cut(s) 158, 183
TasI AATT 1 cut(s) 167
TauI GCSGC 3 cut(s) 26, 38, 41
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.