Prupe.3G137400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
14500977 .. 14502217
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G137400.1

Sequence Viewer

Length: 246 bp
ATGAAGAAGCCTGGTGTTTTAGCAGCCTCAGTCGCCGCCGCTTCTGCTACTGCTCTCGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAGCTTTGTGTCTAATTCAACCATGCGATTTTCTAATCAGGAGGCTGTCTCTTCTAAGAGAAATCAAGAAAATCCATCACCTTCCACAGAAAAATTTGCTCCGAGGTTCGATGGCTTGAGATTTATTGAAACCTTGGTCACTGCTCATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.46

Weight (kDa)

10.41

Isoelectric Point (pI)

63.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019575)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28290 AT4G28290
malus_domestica MD09G1247900.v1.1 MD17G1240800.v1.1
prunus_persica Prupe.3G137400_v2.0.a1
pyrus_communis pycom09g16540 pycom17g24400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 39
AcsI RAATTY 1 cut(s) 185
AgsI TTSAA 3 cut(s) 93, 111, 221
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 23, 59
ApoI RAATTY 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 162
BbvI GCAGC 2 cut(s) 35, 46
BccI CCATC 2 cut(s) 175, 197
BciT130I CCWGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 145
BisI GCNGC 4 cut(s) 24, 36, 39, 60
BlsI GCNGC 4 cut(s) 25, 37, 40, 61
Bme1390I CCNGG 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpuEI CTTGAG 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 194, 225
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 194, 225
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 35, 46
BsmAI GTCTC 1 cut(s) 145
BspACI CCGC 2 cut(s) 36, 39
BspCNI CTCAG 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 194, 225
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 28, 147
BstMAI GTCTC 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 32, 44, 59
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 35, 46
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
CviAII CATG 1 cut(s) 115
CviJI RGCY 5 cut(s) 10, 26, 96, 137, 207
CviKI_1 RGCY 5 cut(s) 10, 26, 96, 137, 207
DdeI CTNAG 2 cut(s) 28, 147
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 240
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 24, 36, 39, 60
Fsp4HI GCNGC 4 cut(s) 24, 36, 39, 60
GluI GCNGC 4 cut(s) 24, 36, 39, 60
Hin1II CATG 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 94
HphI GGTGA 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 131, 158
HpyAV CCTTC 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 44, 59
HpyF3I CTNAG 2 cut(s) 28, 147
Hsp92II CATG 1 cut(s) 118
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 2 cut(s) 24, 116
Lsp1109I GCAGC 2 cut(s) 35, 46
MaeIII GTNAC 1 cut(s) 229
MluCI AATT 2 cut(s) 106, 185
MnlI CCTC 3 cut(s) 37, 127, 189
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 32, 44, 59
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 229
PkrI GCNGC 4 cut(s) 25, 37, 40, 61
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
SatI GCNGC 4 cut(s) 24, 36, 39, 60
ScrFI CCNGG 1 cut(s) 12
SetI ASST 4 cut(s) 98, 175, 200, 227
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 2 cut(s) 106, 185
SsiI CCGC 2 cut(s) 36, 39
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 1 cut(s) 201
TasI AATT 2 cut(s) 106, 185
TauI GCSGC 2 cut(s) 38, 41
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 23, 59
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.