Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009632

Physical Location & Seq

Genomic Coordinates Reverse (-)

15914670 .. 15918153

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGACAACAACAACAACAACAACACTTTTAGTTCTCTGGATAATGTCATGACTAACCAAAATCCTCTTCTCATGGATTTTATACCTTCAAGAGAAGATTCAACTTCATTCTCAACAATGCTTCCATGGAATACCATCAGATCAGATCCTCTACAAATGGGTGGCTTTGATATTTTCAATTCTATGCTGACTAACAAATACTTATCATCTTCTCCACGGTCTATCGATGTTCAAGATAACCGCAATGTTGAGTTCATGGCTCCTCCTCCTCATCCTCCTCCACTTCATCCTTTGGATCATTTAAGACACTATGATGATTCCTCAAACAACATGTGGGGTTTTGAAGCAAATAGTGAGTTTCAGGCATTTTCAGGTGTAGTTGGTCCAAGTGAACCAATGATGTCTACATTCGGTGAAGAAGATTTCCCGTTTCTAATTTCGAATAAAAGAAACAATGAGCTTTCATTGAGTCTTGCATCAGATGTTTCTGATGAATGCTCGGAGATAAGTCTTTGTGCAGCTACAAGATTAGCCTCAGAGCAAGCTTCTTGCAGCAGCAAAGACATTTCTAATAACGTTGTTACTCAAGGTTTCTCTCAACTTATATTTGGCTCAAAATACCTTCACTCTGTTCAAGAAATACTATCTCATTTCGCCGCATACTCGCTCGATTATTCATCTCGAGGAACCGAGTCAGGAGCTGCTAGTTCAGCCTTTACTTCACGTTTTGAGAATATAACTGAGTTTCTTGATGGTGATTCTAATAACTCGGAGGCGGGTTTCGGATCTACATTTCAAAGGAGAGCATTAGAAGCAAAGAAAACCCATCTCTTGGATCTTCTTCAAATGGTGGATGATCGATATAGTCATTGCGTAGATGAGATTCATACGGTTATATCAGCGTTCCATGCTGCAACCGAGTTAGATCCACAGTTACACACCCGGTTTGCCCTCCAAACCGTTTCCTTCTTATACAAGAACCTGAGAGAGAGAATCTGCAAGAAGATAATCTCTATGGGATCTGTATTGGAGAGAGGCAAAGACAAGACTCAAGAAACCTCTATGTTCCACCAGCATTGCCTTCTTCAGCAGCTGAAACGAAAGAACCATCAGATTTGGAGACCTCAACGAGGTTTGCCTGAGAAATCTGTTTCGGTTCTACGGAATTGGATGTTCCAAAACTTCCTTCACCCTTACCCGAAAGATTCGGAGAAACATCTTCTAGCTATACGAAGTGGCTTGACAAGAAGTCAGGTATCAAACTGGTTTATAAATGCGCGGGTTAGGCTATGGAAGCCGATGATAGAAGAGATGTATGCGGAAATGAACAAGAGGAAGCTCAATAACAGTCACATTCAACCCAACGGACCAACTCTTCGAATGCCAAAATCTGTTATGATGAGCCAAGCAATGCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0010227 GO:0010228 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044424 GO:0044464 GO:0046885 GO:0046890 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:0090470 GO:0090567 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

473

Amino Acids

53.9

Weight (kDa)

6.42

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	202 - 332	1.6e-29	Associated with HOX
Homeobox_KN	PF05920	390 - 429	2.7e-16	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32980 AT4G32980
fragaria_vesca	FvH4_2g32060 FvH4_2g32060
malus_domestica	MD08G1043600.v1.1 MD15G1061000.v1.1
prunus_persica	Prupe.1G413700_v2.0.a1
pyrus_communis	pycom08g03520 pycom15g05710
rosa_chinensis	RchiOBHm_Chr6g0310681
rosa_laevigata	RLG00000010465
rosa_roxburghii	Rroxscaffold_7G00158350
rosa_rugosa	Rorug06G0382200 Rorug06G0382200 Rorug06G0382300 Rorug06G0382400 Rorug06G0382500
rosa_samantha	Rh6AG496200 Rh6BG505700 Rh6CG511400 Rh6DG497100
rosa_wichuraiana	Rw6G043150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1271
AccB7I	CCANNNNNTGG	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	404
AccII	CGCG	1 cut(s)	1279
AciI	CCGC	5 cut(s)	241, 657, 776, 1279, 1319
AclI	AACGTT	1 cut(s)	576
AclWI	GGATC	6 cut(s)	140, 303, 793, 843, 920, 1027
AcuI	CTGAAG	1 cut(s)	1070
AfiI	CCNNNNNNNGG	2 cut(s)	832, 1130
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	9 cut(s)	90, 102, 178, 233, 344, 635, 797, 845, 1358
AhdI	GACNNNNNGTC	1 cut(s)	1248
AjuI	GAANNNNNNNTTGG	4 cut(s)	51, 83, 1170, 1202
AluBI	AGCT	7 cut(s)	460, 521, 545, 701, 1093, 1226, 1339
AluI	AGCT	7 cut(s)	460, 521, 545, 701, 1093, 1226, 1339
Alw26I	GTCTC	1 cut(s)	1114
AlwI	GGATC	6 cut(s)	140, 303, 793, 843, 920, 1027
AlwNI	CAGNNNCTG	2 cut(s)	701, 1093
Ama87I	CYCGRG	1 cut(s)	681
ApeKI	GCWGC	6 cut(s)	518, 552, 555, 701, 911, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	1359, 1391
AspLEI	GCGC	1 cut(s)	1279
AspS9I	GGNCC	2 cut(s)	383, 1367
AsuC2I	CCSGG	1 cut(s)	943
AsuHPI	GGTGA	3 cut(s)	425, 767, 1181
AsuII	TTCGAA	2 cut(s)	440, 1378
AvaI	CYCGRG	1 cut(s)	681
AvaII	GGWCC	2 cut(s)	383, 1367
BbvI	GCAGC	6 cut(s)	530, 564, 567, 688, 898, 1102
BccI	CCATC	4 cut(s)	143, 746, 834, 1116
BcnI	CCSGG	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	1114
BfaI	CTAG	2 cut(s)	705, 1223
BisI	GCNGC	7 cut(s)	519, 553, 556, 657, 702, 912, 1091
BlsI	GCNGC	7 cut(s)	520, 554, 557, 658, 703, 913, 1092
Bme1390I	CCNGG	1 cut(s)	943
Bme18I	GGWCC	2 cut(s)	383, 1367
BmeRI	GACNNNNNGTC	1 cut(s)	1248
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	383, 1367
BmiI	GGNNCC	2 cut(s)	261, 688
BmrFI	CCNGG	1 cut(s)	943
BmsI	GCATC	1 cut(s)	485
Bpu14I	TTCGAA	2 cut(s)	440, 1378
BpuEI	CTTGAG	2 cut(s)	570, 1035
BpuMI	CCSGG	1 cut(s)	943
Bsa29I	ATCGAT	2 cut(s)	225, 859
BsaI	GGTCTC	1 cut(s)	1114
BsaJI	CCNNGG	2 cut(s)	125, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	832, 1130
Bse1I	ACTGG	1 cut(s)	1268
Bse3DI	GCAATG	4 cut(s)	250, 868, 1075, 1416
BseCI	ATCGAT	2 cut(s)	225, 859
BseDI	CCNNGG	2 cut(s)	125, 215
BseGI	GGATG	4 cut(s)	271, 286, 859, 1176
BseLI	CCNNNNNNNGG	2 cut(s)	832, 1130
BseMI	GCAATG	4 cut(s)	250, 868, 1075, 1416
BseMII	CTCAG	4 cut(s)	549, 732, 974, 1131
BseNI	ACTGG	1 cut(s)	1268
BseRI	GAGGAG	4 cut(s)	252, 255, 258, 267
BseXI	GCAGC	6 cut(s)	530, 564, 567, 688, 898, 1102
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	1279
BshVI	ATCGAT	2 cut(s)	225, 859
BsiHKCI	CYCGRG	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	943
BslI	CCNNNNNNNGG	2 cut(s)	832, 1130
BsmAI	GTCTC	1 cut(s)	1114
BsmI	GAATGC	2 cut(s)	500, 1386
Bso31I	GGTCTC	1 cut(s)	1114
BsoBI	CYCGRG	1 cut(s)	681
Bsp119I	TTCGAA	2 cut(s)	440, 1378
Bsp143I	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	5 cut(s)	241, 657, 776, 1279, 1319
BspCNI	CTCAG	4 cut(s)	548, 733, 975, 1132
BspDI	ATCGAT	2 cut(s)	225, 859
BspFNI	CGCG	1 cut(s)	1279
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	261, 688
BspPI	GGATC	6 cut(s)	140, 303, 793, 843, 920, 1027
BspT104I	TTCGAA	2 cut(s)	440, 1378
BspTNI	GGTCTC	1 cut(s)	1114
BsrDI	GCAATG	4 cut(s)	250, 868, 1075, 1416
BsrI	ACTGG	1 cut(s)	1268
BssECI	CCNNGG	2 cut(s)	125, 215
BssMI	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	5 cut(s)	219, 892, 933, 961, 1349
Bst6I	CTCTTC	3 cut(s)	72, 1302, 1380
BstBI	TTCGAA	2 cut(s)	440, 1378
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	535, 741, 983, 1140
BstDSI	CCRYGG	2 cut(s)	125, 215
BstENI	CCTNNNNNAGG	1 cut(s)	1128
BstF5I	GGATG	4 cut(s)	271, 286, 859, 1176
BstFNI	CGCG	1 cut(s)	1279
BstHHI	GCGC	1 cut(s)	1279
BstKTI	GATC	8 cut(s)	143, 148, 298, 788, 838, 859, 928, 1022
BstMAI	GTCTC	1 cut(s)	1114
BstMBI	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
BstMWI	GCNNNNNNNGC	5 cut(s)	710, 812, 908, 1285, 1294
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	941
BstUI	CGCG	1 cut(s)	1279
BstV1I	GCAGC	6 cut(s)	530, 564, 567, 688, 898, 1102
BstX2I	RGATCY	5 cut(s)	145, 785, 835, 925, 1019
BstYI	RGATCY	5 cut(s)	145, 785, 835, 925, 1019
Bsu15I	ATCGAT	2 cut(s)	225, 859
BsuTUI	ATCGAT	2 cut(s)	225, 859
BtgI	CCRYGG	2 cut(s)	125, 215
BtsCI	GGATG	4 cut(s)	271, 286, 859, 1176
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	2 cut(s)	701, 1093
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	1279
Cfr13I	GGNCC	2 cut(s)	383, 1367
ClaI	ATCGAT	2 cut(s)	225, 859
CspCI	CAANNNNNGTGG	2 cut(s)	1058, 1093
CviAII	CATG	6 cut(s)	49, 73, 126, 256, 331, 908
DdeI	CTNAG	4 cut(s)	535, 741, 983, 1140
DpnI	GATC	8 cut(s)	142, 147, 297, 787, 837, 858, 927, 1021
DpnII	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
DriI	GACNNNNNGTC	1 cut(s)	1248
Eam1104I	CTCTTC	3 cut(s)	72, 1302, 1380
Eam1105I	GACNNNNNGTC	1 cut(s)	1248
EarI	CTCTTC	3 cut(s)	72, 1302, 1380
Eco130I	CCWWGG	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	1114
Eco47I	GGWCC	2 cut(s)	383, 1367
Eco57I	CTGAAG	1 cut(s)	1070
Eco88I	CYCGRG	1 cut(s)	681
EcoNI	CCTNNNNNAGG	1 cut(s)	1128
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	1416
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	6 cut(s)	52, 76, 129, 259, 334, 911
FatI	CATG	6 cut(s)	48, 72, 125, 255, 330, 907
FauI	CCCGC	2 cut(s)	769, 1272
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	7 cut(s)	519, 553, 556, 657, 702, 912, 1091
FokI	GGATG	4 cut(s)	258, 273, 866, 1183
Fsp4HI	GCNGC	7 cut(s)	519, 553, 556, 657, 702, 912, 1091
FspBI	CTAG	2 cut(s)	705, 1223
GlaI	GCGC	1 cut(s)	1278
GluI	GCNGC	7 cut(s)	519, 553, 556, 657, 702, 912, 1091
HapII	CCGG	1 cut(s)	943
HhaI	GCGC	1 cut(s)	1279
Hin1II	CATG	6 cut(s)	52, 76, 129, 259, 334, 911
Hin6I	GCGC	1 cut(s)	1277
HinP1I	GCGC	1 cut(s)	1277
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	9 cut(s)	98, 317, 469, 692, 758, 883, 993, 1048, 1205
HpaII	CCGG	1 cut(s)	943
HphI	GGTGA	3 cut(s)	425, 767, 1181
Hpy166II	GTNNAC	2 cut(s)	392, 405
Hpy188III	TCNNGA	9 cut(s)	38, 49, 90, 233, 635, 681, 696, 749, 1052
Hpy8I	GTNNAC	2 cut(s)	392, 405
HpyAV	CCTTC	5 cut(s)	96, 632, 976, 1091, 1196
HpyCH4III	ACNGT	5 cut(s)	219, 892, 933, 961, 1349
HpyCH4IV	ACGT	2 cut(s)	576, 724
HpyCH4V	TGCA	6 cut(s)	476, 518, 552, 914, 999, 1414
HpyF10VI	GCNNNNNNNGC	5 cut(s)	710, 812, 908, 1285, 1294
HpyF3I	CTNAG	4 cut(s)	535, 741, 983, 1140
HpySE526I	ACGT	2 cut(s)	576, 724
Hsp92II	CATG	6 cut(s)	52, 76, 129, 259, 334, 911
HspAI	GCGC	1 cut(s)	1277
Kzo9I	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
LmnI	GCTCC	2 cut(s)	265, 698
Lsp1109I	GCAGC	6 cut(s)	530, 564, 567, 688, 898, 1102
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	2 cut(s)	705, 1223
MaeII	ACGT	2 cut(s)	576, 724
MaeIII	GTNAC	3 cut(s)	580, 933, 1349
MalI	GATC	8 cut(s)	142, 147, 297, 787, 837, 858, 927, 1021
MboI	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
MflI	RGATCY	5 cut(s)	145, 785, 835, 925, 1019
MluCI	AATT	3 cut(s)	178, 435, 1165
MlyI	GAGTC	3 cut(s)	478, 701, 1042
Mph1103I	ATGCAT	1 cut(s)	1416
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	1093
MspI	CCGG	1 cut(s)	943
MspR9I	CCNGG	1 cut(s)	943
Mva1269I	GAATGC	2 cut(s)	500, 1386
MvnI	CGCG	1 cut(s)	1279
MwoI	GCNNNNNNNGC	5 cut(s)	710, 812, 908, 1285, 1294
NciI	CCSGG	1 cut(s)	943
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
NlaIII	CATG	6 cut(s)	52, 76, 129, 259, 334, 911
NlaIV	GGNNCC	2 cut(s)	261, 688
NmuCI	GTSAC	1 cut(s)	1349
NsiI	ATGCAT	1 cut(s)	1416
NspI	RCATGY	1 cut(s)	334
NspV	TTCGAA	2 cut(s)	440, 1378
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	1 cut(s)	48
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	2 cut(s)	500, 1386
PfeI	GAWTC	6 cut(s)	98, 317, 758, 883, 993, 1205
PflMI	CCANNNNNTGG	1 cut(s)	832
PkrI	GCNGC	7 cut(s)	520, 554, 557, 658, 703, 913, 1092
PleI	GAGTC	3 cut(s)	477, 700, 1042
PpsI	GAGTC	3 cut(s)	477, 700, 1042
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	1271
Psp1406I	AACGTT	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	261, 688
PspPI	GGNCC	2 cut(s)	383, 1367
PstNI	CAGNNNCTG	2 cut(s)	701, 1093
PsuI	RGATCY	5 cut(s)	145, 785, 835, 925, 1019
PvuII	CAGCTG	1 cut(s)	1093
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	7 cut(s)	519, 553, 556, 657, 702, 912, 1091
Sau3AI	GATC	8 cut(s)	140, 145, 295, 785, 835, 856, 925, 1019
Sau96I	GGNCC	2 cut(s)	383, 1367
SchI	GAGTC	3 cut(s)	478, 701, 1042
ScrFI	CCNGG	1 cut(s)	943
SfaNI	GCATC	1 cut(s)	485
Sfr274I	CTCGAG	1 cut(s)	681
SfuI	TTCGAA	2 cut(s)	440, 1378
SinI	GGWCC	2 cut(s)	383, 1367
SlaI	CTCGAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	3 cut(s)	585, 681, 1050
SmoI	CTYRAG	3 cut(s)	585, 681, 1050
Sse9I	AATT	3 cut(s)	178, 435, 1165
SsiI	CCGC	5 cut(s)	241, 657, 776, 1279, 1319
SspMI	CTAG	2 cut(s)	705, 1223
StyD4I	CCNGG	1 cut(s)	941
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	5 cut(s)	219, 892, 933, 961, 1349
TaiI	ACGT	2 cut(s)	579, 727
TaqI	TCGA	6 cut(s)	225, 440, 669, 682, 859, 1378
TasI	AATT	3 cut(s)	178, 435, 1165
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	6 cut(s)	98, 317, 758, 883, 993, 1205
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	1349
TseI	GCWGC	6 cut(s)	518, 552, 555, 701, 911, 1090
Tsp45I	GTSAC	1 cut(s)	1349
TspDTI	ATGAA	8 cut(s)	96, 244, 275, 453, 507, 666, 875, 1340
TspGWI	ACGGA	2 cut(s)	1177, 1380
Van91I	CCANNNNNTGG	1 cut(s)	832
VpaK11BI	GGWCC	2 cut(s)	383, 1367
XagI	CCTNNNNNAGG	1 cut(s)	1128
XceI	RCATGY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	681
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	2 cut(s)	705, 1223
Zsp2I	ATGCAT	1 cut(s)	1416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.