Prupe.1G413700_v2.0.a1

homeobox protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
36034426 .. 36036739
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G413700.1

Sequence Viewer

Length: 1710 bp
ATGATGGACAATCAAATGTATAATGTCCCTACGGACTTGACCGCCCGAAATTCGGTTGTCATGGATGGGATTGTACCACATACAACGATGAACTCACTTGTTCAATCCTATTCATTTGATCTTAATCACCAAAACCATGGCATGGCCTTAGTTCCGGTGCTTTCATCCTTTCCAGGAGAACCTGTCATGCATTCTCATTCTGAGTTTAATGGCACAAACGGTGCCGGCATTGTTGAATCAAATCCATTTGTTACATCCCAAAGAAGGCATAATGTGAGAGACTCCTCATTCATCAGTTCAAGTTTCGCCGATAATACTGTGTTCCAAGCAACACCTCATTCTGCTGCTTCACTTGCTACCATTTTGGCTGCAAGTGGTAGTCTTCAAGAAAATCTCAACAACTTAGCAATTTCAGGAACTCCGGTCAGTTCTTCAGAAGCTTACGTTTCAAATGACTGCTCTAACAACTCTAATTCTCTGTTTGCAACCTCTGTGAATTGTGGATATGATGAAATACTTGGTAGTATAAGTAGTCAGTGGGAGATCAACAAGTACGCAGCTCCTTCGGAACTTGGTGAGAGAACTTCGGTAAGAACAGGGCTTCAACCATATTCACCCACAGGAAATCTGGATCCAAATGGATGGTTATCATCAAATGGTGAAAATGCAATGACATATCATTCTTACAGTTCCTGTAAATTCAGCAACGAGCTCGCTCTAACTCTTGCCACATCCAGCCCTGCTATCGTCGGTGGGGTGGATATCCGAAATCAGTGTTCAGACATTGGTTCTTCTGGGATGGCTCACCCTTCTTTGAATCAAACAAGGTTTGGCTCATCAGAGCAAAATTCTTGCAACAGTGAGGAGCTTTCTCTAAGTTTTGGTTCTTGCAAACCTCCTCAACTATCCCACGTAATATGTGGATCAAGATATCTTCATGTGGTTCAGGAAATACTTTTTGACATTGCAAGCTACTCACTAGAAAATCTAGACCAGTCGAGTTTTTCATCTGCGAGGATCTTGTCTGAGAACGCTGACAGCGATAGTAGATTTGAGCTGCATAAGGAGACTGCATTGCAAAAACAGGAAATCAAAACAAAGAAATCCAAATTGCTGACCCTATTACAAATGCTTGATGATTGCTACAACCAATGTGTAGATGAGATTCATACAGTTGTATCAGCATTTCATGCTGCTACTGAGACGGATCCCCATATACATGCTCGTTTTGCACTTCAAACAATCTCTGTACTGTATAAAAATCTGAGGGAAAGGATTAGCACCCATTTCCTTGCAATGACTGCAAATTCGGACCCTGCATCCCCCAGTGAGAGTGAAAGGTCGTTTGAAATCCACAAGCAGTTGGCTCTGCAGCATCTAAAAAAGAAAGAACATCAAATATGGAGACCCCAGAGAGGCTTGCCTGAAAGATCAGTCTCAGTTTTACGTGCATGGATGTTTCAAAACTTCCTTCATCCGTACCCTAAAGATGCAGAGAAGCATGTCCTTGCAGTGAAAAGTGGATTGACAAGAAACCAGGTATCCAACTGGTTCATCAACGCTCGTGTCCGGCTATGGAAACCGATGATTGAGGAAATGTACTCGGAGATGAACAGACGAAAGACTCGTCAAAGTGACAACACTGAGAGAAACAATAGAAGCCACCACCACAACATAAGTATTAACCATCACAAATTTGGTGTGAACTGA

Protein Analysis

570

Amino Acids

63.31

Weight (kDa)

6.38

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 142
AciI CCGC 1 cut(s) 42
AclWI GGATC 6 cut(s) 626, 639, 931, 1025, 1202, 1215
AcsI RAATTY 5 cut(s) 49, 698, 847, 1306, 1694
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 5 cut(s) 75, 554, 1251, 1481, 1601
AfiI CCNNNNNNNGG 4 cut(s) 52, 142, 264, 1415
AjnI CCWGG 2 cut(s) 172, 1536
AluBI AGCT 6 cut(s) 440, 560, 712, 868, 972, 1057
AluI AGCT 6 cut(s) 440, 560, 712, 868, 972, 1057
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 5 cut(s) 273, 1061, 1196, 1399, 1441
AlwI GGATC 6 cut(s) 626, 639, 931, 1025, 1202, 1215
AlwNI CAGNNNCTG 1 cut(s) 693
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 6 cut(s) 344, 368, 557, 1057, 1193, 1372
ApoI RAATTY 5 cut(s) 49, 698, 847, 1306, 1694
ArsI GACNNNNNNTTYG 4 cut(s) 1291, 1323, 1612, 1644
AspS9I GGNCC 1 cut(s) 1312
AsuHPI GGTGA 5 cut(s) 119, 587, 606, 671, 797
AvaII GGWCC 1 cut(s) 1312
BaeI ACNNNNGTAYC 2 cut(s) 1161, 1194
BamHI GGATCC 2 cut(s) 631, 1207
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 714
BauI CACGAG 1 cut(s) 1563
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 6 cut(s) 331, 355, 569, 1044, 1180, 1384
BccI CCATC 4 cut(s) 59, 636, 793, 1695
BcgI CGANNNNNNTGC 4 cut(s) 546, 580, 694, 728
BciT130I CCWGG 2 cut(s) 174, 1538
BciVI GTATCC 1 cut(s) 1552
BcoDI GTCTC 5 cut(s) 273, 1061, 1196, 1399, 1441
BfaI CTAG 2 cut(s) 980, 989
BfmI CTRYAG 1 cut(s) 1370
BfuI GTATCC 1 cut(s) 1552
BisI GCNGC 6 cut(s) 345, 369, 558, 1058, 1194, 1373
BlsI GCNGC 6 cut(s) 346, 370, 559, 1059, 1195, 1374
Bme1390I CCNGG 2 cut(s) 174, 1538
Bme18I GGWCC 1 cut(s) 1312
BmgT120I GGNCC 1 cut(s) 1312
BmiI GGNNCC 4 cut(s) 223, 633, 1209, 1314
BmrFI CCNGG 2 cut(s) 174, 1538
BmrI ACTGGG 1 cut(s) 1320
BmsI GCATC 3 cut(s) 1328, 1384, 1480
BmuI ACTGGG 1 cut(s) 1320
BpiI GAAGAC 1 cut(s) 374
BsaAI YACGTR 2 cut(s) 913, 1448
BsaBI GATNNNNATC 2 cut(s) 123, 646
BsaI GGTCTC 1 cut(s) 1399
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 2 cut(s) 154, 421
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 142, 264, 1415
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 994, 1326, 1553
Bse3DI GCAATG 4 cut(s) 675, 963, 1073, 1302
Bse8I GATNNNNATC 2 cut(s) 123, 646
BseBI CCWGG 2 cut(s) 174, 1538
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 9 cut(s) 70, 164, 254, 647, 731, 804, 1319, 1461, 1474
BseJI GATNNNNATC 2 cut(s) 123, 646
BseLI CCNNNNNNNGG 4 cut(s) 52, 142, 264, 1415
BseMI GCAATG 4 cut(s) 675, 963, 1073, 1302
BseMII CTCAG 6 cut(s) 192, 1017, 1191, 1256, 1452, 1635
BseNI ACTGG 3 cut(s) 994, 1326, 1553
BseRI GAGGAG 3 cut(s) 274, 878, 888
BseXI GCAGC 6 cut(s) 331, 355, 569, 1044, 1180, 1384
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 714
BsiSI CCGG 4 cut(s) 155, 225, 422, 1570
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 4 cut(s) 52, 142, 264, 1415
BsmAI GTCTC 5 cut(s) 273, 1061, 1196, 1399, 1441
BsmBI CGTCTC 1 cut(s) 1196
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 1399
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 6 cut(s) 193, 1018, 1192, 1257, 1451, 1636
BspLI GGNNCC 4 cut(s) 223, 633, 1209, 1314
BspMAI CTGCAG 1 cut(s) 1374
BspPI GGATC 6 cut(s) 626, 639, 931, 1025, 1202, 1215
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 1399
BsrDI GCAATG 4 cut(s) 675, 963, 1073, 1302
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 3 cut(s) 994, 1326, 1553
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
BssSI CACGAG 1 cut(s) 1563
BssT1I CCWWGG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 1563
Bst2UI CCWGG 2 cut(s) 174, 1538
Bst4CI ACNGT 6 cut(s) 221, 319, 689, 860, 1174, 1254
BstAPI GCANNNNNTGC 2 cut(s) 1190, 1301
BstBAI YACGTR 2 cut(s) 913, 1448
BstC8I GCNNGC 4 cut(s) 226, 714, 970, 1421
BstDEI CTNAG 9 cut(s) 148, 201, 403, 875, 1026, 1200, 1265, 1438, 1644
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 9 cut(s) 70, 164, 254, 647, 731, 804, 1319, 1461, 1474
BstKTI GATC 7 cut(s) 121, 546, 634, 926, 1020, 1210, 1433
BstMAI GTCTC 5 cut(s) 273, 1061, 1196, 1399, 1441
BstMBI GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
BstMWI GCNNNNNNNGC 4 cut(s) 353, 1190, 1229, 1301
BstNI CCWGG 2 cut(s) 174, 1538
BstNSI RCATGY 2 cut(s) 1223, 1505
BstSCI CCNGG 2 cut(s) 172, 1536
BstSFI CTRYAG 1 cut(s) 1370
BstV1I GCAGC 6 cut(s) 331, 355, 569, 1044, 1180, 1384
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 3 cut(s) 631, 1017, 1207
BstXI CCANNNNNNTGG 2 cut(s) 137, 642
BstYI RGATCY 3 cut(s) 631, 1017, 1207
BsuI GTATCC 1 cut(s) 1552
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 9 cut(s) 70, 164, 254, 647, 731, 804, 1319, 1461, 1474
BtsI GCAGTG 1 cut(s) 1518
BtsIMutI CAGTG 6 cut(s) 542, 779, 865, 1333, 1518, 1641
Cac8I GCNNGC 4 cut(s) 226, 714, 970, 1421
CaiI CAGNNNCTG 1 cut(s) 693
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 1312
CsiI ACCWGGT 1 cut(s) 1536
Csp6I GTAC 5 cut(s) 74, 553, 1250, 1480, 1600
CviAII CATG 9 cut(s) 61, 137, 142, 187, 938, 1190, 1220, 1452, 1502
CviQI GTAC 5 cut(s) 74, 553, 1250, 1480, 1600
DdeI CTNAG 9 cut(s) 148, 201, 403, 875, 1026, 1200, 1265, 1438, 1644
DpnI GATC 7 cut(s) 120, 545, 633, 925, 1019, 1209, 1432
DpnII GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 1399
Eco32I GATATC 2 cut(s) 763, 932
Eco47I GGWCC 1 cut(s) 1312
Eco53kI GAGCTC 1 cut(s) 712
Eco57I CTGAAG 1 cut(s) 417
EcoICRI GAGCTC 1 cut(s) 712
EcoRII CCWGG 2 cut(s) 172, 1536
EcoRV GATATC 2 cut(s) 763, 932
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 1196
FaeI CATG 9 cut(s) 64, 140, 145, 190, 941, 1193, 1223, 1455, 1505
FaqI GGGAC 1 cut(s) 11
FatI CATG 9 cut(s) 60, 136, 141, 186, 937, 1189, 1219, 1451, 1501
Fnu4HI GCNGC 6 cut(s) 345, 369, 558, 1058, 1194, 1373
FokI GGATG 9 cut(s) 77, 151, 241, 654, 718, 811, 1306, 1461, 1468
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 6 cut(s) 345, 369, 558, 1058, 1194, 1373
FspBI CTAG 2 cut(s) 980, 989
GluI GCNGC 6 cut(s) 345, 369, 558, 1058, 1194, 1373
HaeIII GGCC 1 cut(s) 146
HapII CCGG 4 cut(s) 155, 225, 422, 1570
Hin1II CATG 9 cut(s) 64, 140, 145, 190, 941, 1193, 1223, 1455, 1505
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 5 cut(s) 236, 281, 817, 1165, 1624
HpaII CCGG 4 cut(s) 155, 225, 422, 1570
HphI GGTGA 5 cut(s) 119, 587, 606, 671, 797
Hpy166II GTNNAC 1 cut(s) 1705
Hpy188III TCNNGA 6 cut(s) 386, 414, 629, 927, 947, 989
Hpy8I GTNNAC 1 cut(s) 1705
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 4 cut(s) 258, 573, 819, 1481
HpyCH4III ACNGT 6 cut(s) 221, 319, 689, 860, 1174, 1254
HpyCH4IV ACGT 3 cut(s) 444, 912, 1447
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 1190, 1229, 1301
HpyF3I CTNAG 9 cut(s) 148, 201, 403, 875, 1026, 1200, 1265, 1438, 1644
HpySE526I ACGT 3 cut(s) 444, 912, 1447
Hsp92II CATG 9 cut(s) 64, 140, 145, 190, 941, 1193, 1223, 1455, 1505
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
LmnI GCTCC 2 cut(s) 565, 865
Lsp1109I GCAGC 6 cut(s) 331, 355, 569, 1044, 1180, 1384
LweI GCATC 3 cut(s) 1328, 1384, 1480
MabI ACCWGGT 1 cut(s) 1536
MaeI CTAG 2 cut(s) 980, 989
MaeII ACGT 3 cut(s) 444, 912, 1447
MaeIII GTNAC 2 cut(s) 250, 1634
MalI GATC 7 cut(s) 120, 545, 633, 925, 1019, 1209, 1432
MboI GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
MboII GAAGA 4 cut(s) 374, 423, 783, 926
MflI RGATCY 3 cut(s) 631, 1017, 1207
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 9 cut(s) 49, 408, 472, 496, 698, 847, 1109, 1306, 1694
MlyI GAGTC 2 cut(s) 275, 1618
MmeI TCCRAC 1 cut(s) 1569
Mph1103I ATGCAT 1 cut(s) 192
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 3 cut(s) 123, 207, 1683
MslI CAYNNNNRTG 1 cut(s) 1218
MspI CCGG 4 cut(s) 155, 225, 422, 1570
MspR9I CCNGG 2 cut(s) 174, 1538
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 2 cut(s) 174, 1538
MwoI GCNNNNNNNGC 4 cut(s) 353, 1190, 1229, 1301
NaeI GCCGGC 1 cut(s) 226
NcoI CCATGG 1 cut(s) 136
NdeII GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 9 cut(s) 64, 140, 145, 190, 941, 1193, 1223, 1455, 1505
NlaIV GGNNCC 4 cut(s) 223, 633, 1209, 1314
NmuCI GTSAC 1 cut(s) 1634
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 2 cut(s) 1223, 1505
PcsI WCGNNNNNNNCGW 2 cut(s) 1038, 1624
PctI GAATGC 1 cut(s) 190
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 236, 817, 1165
PflMI CCANNNNNTGG 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 6 cut(s) 346, 370, 559, 1059, 1195, 1374
PleI GAGTC 2 cut(s) 275, 1618
PpsI GAGTC 2 cut(s) 275, 1618
Ppu21I YACGTR 2 cut(s) 913, 1448
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 172, 1536
PspGI CCWGG 2 cut(s) 172, 1536
PspN4I GGNNCC 4 cut(s) 223, 633, 1209, 1314
PspPI GGNCC 1 cut(s) 1312
PstI CTGCAG 1 cut(s) 1374
PstNI CAGNNNCTG 1 cut(s) 693
PsuI RGATCY 3 cut(s) 631, 1017, 1207
RsaI GTAC 5 cut(s) 75, 554, 1251, 1481, 1601
RsaNI GTAC 5 cut(s) 74, 553, 1250, 1480, 1600
RseI CAYNNNNRTG 1 cut(s) 1218
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 123, 207, 1683
SatI GCNGC 6 cut(s) 345, 369, 558, 1058, 1194, 1373
Sau3AI GATC 7 cut(s) 118, 543, 631, 923, 1017, 1207, 1430
Sau96I GGNCC 1 cut(s) 1312
SchI GAGTC 2 cut(s) 275, 1618
ScrFI CCNGG 2 cut(s) 174, 1538
SduI GDGCHC 1 cut(s) 714
SexAI ACCWGGT 1 cut(s) 1536
SfaNI GCATC 3 cut(s) 1328, 1384, 1480
SfcI CTRYAG 1 cut(s) 1370
SinI GGWCC 1 cut(s) 1312
SmiMI CAYNNNNRTG 1 cut(s) 1218
Sse9I AATT 9 cut(s) 49, 408, 472, 496, 698, 847, 1109, 1306, 1694
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 980, 989
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 2 cut(s) 172, 1536
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 6 cut(s) 221, 319, 689, 860, 1174, 1254
TaiI ACGT 3 cut(s) 447, 915, 1450
TaqI TCGA 1 cut(s) 998
TasI AATT 9 cut(s) 49, 408, 472, 496, 698, 847, 1109, 1306, 1694
TatI WGTACW 2 cut(s) 1249, 1599
TfiI GAWTC 3 cut(s) 236, 817, 1165
Tru1I TTAA 3 cut(s) 123, 207, 1683
Tru9I TTAA 3 cut(s) 123, 207, 1683
TscAI CASTG 6 cut(s) 542, 779, 865, 1333, 1518, 1648
TseFI GTSAC 1 cut(s) 1634
TseI GCWGC 6 cut(s) 344, 368, 557, 1057, 1193, 1372
Tsp45I GTSAC 1 cut(s) 1634
TspGWI ACGGA 3 cut(s) 47, 1220, 1467
TspRI CASTG 6 cut(s) 542, 779, 865, 1333, 1518, 1648
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 1312
XapI RAATTY 5 cut(s) 49, 698, 847, 1306, 1694
XbaI TCTAGA 1 cut(s) 988
XceI RCATGY 2 cut(s) 1223, 1505
XcmI CCANNNNNNNNNTGG 3 cut(s) 625, 917, 1694
XspI CTAG 2 cut(s) 980, 989
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.