Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009632

Physical Location & Seq

Genomic Coordinates Forward (+)

52819314 .. 52821006

Gene Structure 1693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0382400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGTATAAAGTAGCAAGCGCTTCCGAGTATCTGGTGATCACGGGGGCCGGAATCCCCGATCTGAAGATCGCAAAGAAGGCATGGGTACTCCCTGGCCAGTGCTACACGGTCATTGACCTCTCTCCGGTGAACTACACATTCGAAGTCCAGGCAATGAGCGCCGAGAAGCTCCCATTTGTTCTCCCTGCTGTCTTTACCATCGGCCCCCGAGCCGACGACAGGGAGGCCATTGAGAAATACGCCAGGCTCCTCGCCAGCTGCGACAAGAACTCGAAACACGTCGAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACTCGCGTCCTTGTGGCGTCGATGACCATGGAGGAGGTGTTCAAGGGGACCAAAGAGTTCAAGGAGGAGGTTTTCGACAAGGTTCAGATCGAGCTCAATCAGTTCGGGCTTTTTATCTACAATGCAAATGTTAAGCAGTTGGTGGACGTCCCTGGACACGAGTATTTCAGTTACTTGGGGCAGAAGACTCAGATGGAGGCTGCCAACCAGGCCAAGGTCGACGTGGCCGAGGCGAAAATGAAAGGTGCTGTTGGCTCCAAGCTGAGGGAGGGGCAGACATTGCAAAACGCTGCCAAGATTGATGCCGAGACGAAGATCATAGCGACTCAGAGGGAAGGGGAGGGGAAGAAGGAGGAGGTTAAGGTGAAGACGGAGGTCAAGGTTTACGAGAACCAAAGAGAAGCTGAGGTGGCTAAAGCAAATGCTGAGCTGGCAATGAAGAAGGCAGGGTGGGCTAAGGAGGCGCAGGTGGCCGAGGTTGAGGCACAGAAGGCGGTGGCGATGAAGGAGGCCCAGTTGCAAAAGGAGGTGGAGAGGATGAATGCACTGACTATGACCGAAAAGCTCAAGGCCGAGTTTTTGAGTAAGGCAAGTGTTGAGGCCGAAACTAAAGCTCAAGAGGCAAACTGGAAGCTCTACCAAGAACAAAAAGCGGCGGATGCGATTCTTTACAACAGGGGGAAAGAGGCAGAGGCAATGAGAGCAGCTGCCGAGGCTCAGTTCTTTGCTAAGCAGAAGGCTGCTGATGGAGAGTTTTATGCTAAGAAGAAAGAGGCCGAGGGACTTGTGGAACTTGGAAAAGCGCAAGGTGTTTATCTAAGCACTCTTATGGACTCGTTGGGTGGCAACTATGGGGCAATGAGGGACTTCATGATGATCAATGGTGGGATGTTTCAAGAGATTGCTAGGATCAATGCCGGGGCGGTGCGTGGGCTTCAGCCTAAGATTAGTATATGGACTAATGGTGGAGAGGCTTCTGGTGGCGGCGGAAATGCGGCTATGAAGGAGGCGGCAGGAGTTTATAAAATGTTGCCACCGTTGTTCAAGACGGTGCAGGAACAGACGGGAATGCTGCCGCCAAATTGGATGGGCACTTTGCCTGCTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0010227 GO:0010228 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044424 GO:0044464 GO:0046885 GO:0046890 GO:0048367 GO:0048437 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:0090470 GO:0090567 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

475

Amino Acids

52.11

Weight (kDa)

5.74

Isoelectric Point (pI)

23.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	8 - 184	3.7e-20	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32980 AT4G32980
fragaria_vesca	FvH4_2g32060 FvH4_2g32060
malus_domestica	MD08G1043600.v1.1 MD15G1061000.v1.1
prunus_persica	Prupe.1G413700_v2.0.a1
pyrus_communis	pycom08g03520 pycom15g05710
rosa_chinensis	RchiOBHm_Chr6g0310681
rosa_laevigata	RLG00000010465
rosa_roxburghii	Rroxscaffold_7G00158350
rosa_rugosa	Rorug06G0382200 Rorug06G0382200 Rorug06G0382300 Rorug06G0382400 Rorug06G0382500
rosa_samantha	Rh6AG496200 Rh6BG505700 Rh6CG511400 Rh6DG497100
rosa_wichuraiana	Rw6G043150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1338
AarI	CACCTGC	1 cut(s)	772
AatII	GACGTC	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	772
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	321
AciI	CCGC	9 cut(s)	809, 968, 971, 1238, 1299, 1302, 1310, 1325, 1391
AclWI	GGATC	1 cut(s)	1232
AcoI	YGGCCR	3 cut(s)	94, 540, 786
AcuI	CTGAAG	2 cut(s)	83, 1235
AcyI	GRCGYC	2 cut(s)	332, 462
AfaI	GTAC	1 cut(s)	87
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	4 cut(s)	124, 219, 529, 579
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	358, 376, 1211, 1360
AjiI	CACGTC	2 cut(s)	280, 538
AjnI	CCWGG	6 cut(s)	91, 147, 242, 294, 466, 522
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	308, 617
AlwI	GGATC	1 cut(s)	1232
Ama87I	CYCGRG	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	19
ApeKI	GCWGC	7 cut(s)	258, 515, 605, 1019, 1022, 1055, 1387
AspLEI	GCGC	4 cut(s)	20, 161, 781, 1120
AspS9I	GGNCC	4 cut(s)	45, 203, 363, 826
AsuC2I	CCSGG	1 cut(s)	1234
AsuHPI	GGTGA	4 cut(s)	46, 139, 323, 691
AsuII	TTCGAA	1 cut(s)	141
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	1409
BalI	TGGCCA	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	411
BauI	CACGAG	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	506, 689
Bbv12I	GWGCWC	1 cut(s)	411
BbvCI	CCTCAGC	2 cut(s)	578, 720
BbvI	GCAGC	7 cut(s)	245, 502, 592, 1009, 1031, 1042, 1374
BccI	CCATC	4 cut(s)	206, 502, 1055, 1396
BciT130I	CCWGG	6 cut(s)	93, 149, 244, 296, 468, 524
BclI	TGATCA	2 cut(s)	36, 1191
BcnI	CCSGG	1 cut(s)	1234
BcoDI	GTCTC	2 cut(s)	308, 617
BfaI	CTAG	1 cut(s)	1221
BfoI	RGCGCY	2 cut(s)	21, 162
BfuAI	ACCTGC	1 cut(s)	772
BglI	GCCNNNNNGGC	1 cut(s)	524
BlpI	GCTNAGC	2 cut(s)	741, 1044
Bme1390I	CCNGG	7 cut(s)	93, 149, 244, 296, 468, 524, 1234
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	2 cut(s)	280, 538
BmgT120I	GGNCC	4 cut(s)	45, 203, 363, 826
BmiI	GGNNCC	5 cut(s)	46, 205, 248, 364, 571
BmrFI	CCNGG	7 cut(s)	93, 149, 244, 296, 468, 524, 1234
BmrI	ACTGGG	1 cut(s)	823
BmsI	GCATC	3 cut(s)	309, 607, 964
BmuI	ACTGGG	1 cut(s)	823
BoxI	GACNNNNGTC	2 cut(s)	320, 689
BpiI	GAAGAC	2 cut(s)	506, 689
Bpu10I	CCTNAGC	3 cut(s)	578, 720, 771
Bpu1102I	GCTNAGC	2 cut(s)	741, 1044
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	866, 915
BpuMI	CCSGG	1 cut(s)	1234
BsaHI	GRCGYC	2 cut(s)	332, 462
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 815, 845
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 219, 529, 579
Bse1I	ACTGG	3 cut(s)	97, 829, 947
Bse3DI	GCAATG	5 cut(s)	159, 593, 756, 1017, 1179
BseBI	CCWGG	6 cut(s)	93, 149, 244, 296, 468, 524
BseGI	GGATG	4 cut(s)	858, 979, 1209, 1407
BseLI	CCNNNNNNNGG	4 cut(s)	124, 219, 529, 579
BseMI	GCAATG	5 cut(s)	159, 593, 756, 1017, 1179
BseMII	CTCAG	6 cut(s)	518, 569, 656, 711, 732, 1046
BseNI	ACTGG	3 cut(s)	97, 829, 947
BseRI	GAGGAG	5 cut(s)	239, 299, 362, 395, 683
BseSI	GKGCMC	1 cut(s)	1409
BseXI	GCAGC	7 cut(s)	245, 502, 592, 1009, 1031, 1042, 1374
BsgI	GTGCAG	1 cut(s)	1388
Bsh1236I	CGCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	48, 125, 1233
BslFI	GGGAC	4 cut(s)	376, 449, 1110, 1193
BslI	CCNNNNNNNGG	4 cut(s)	124, 219, 529, 579
BsmAI	GTCTC	2 cut(s)	308, 617
BsmBI	CGTCTC	1 cut(s)	617
BsmFI	GGGAC	4 cut(s)	376, 449, 1110, 1193
BsmI	GAATGC	2 cut(s)	862, 1389
BsoBI	CYCGRG	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	411, 1409
Bsp143I	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
Bsp1720I	GCTNAGC	2 cut(s)	741, 1044
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	9 cut(s)	809, 968, 971, 1238, 1299, 1302, 1310, 1325, 1391
BspCNI	CTCAG	6 cut(s)	517, 570, 655, 712, 733, 1045
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	1185
BspLI	GGNNCC	5 cut(s)	46, 205, 248, 364, 571
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	1 cut(s)	1232
BspT104I	TTCGAA	1 cut(s)	141
BsrDI	GCAATG	5 cut(s)	159, 593, 756, 1017, 1179
BsrI	ACTGG	3 cut(s)	97, 829, 947
BssMI	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
BssNI	GRCGYC	2 cut(s)	332, 462
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	2 cut(s)	342, 528
Bst2BI	CACGAG	1 cut(s)	473
Bst2UI	CCWGG	6 cut(s)	93, 149, 244, 296, 468, 524
Bst4CI	ACNGT	3 cut(s)	109, 1353, 1366
BstACI	GRCGYC	2 cut(s)	332, 462
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	4 cut(s)	16, 256, 747, 1416
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	4 cut(s)	858, 979, 1209, 1407
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	2 cut(s)	21, 162
BstHHI	GCGC	4 cut(s)	20, 161, 781, 1120
BstKTI	GATC	7 cut(s)	39, 61, 69, 405, 633, 1194, 1227
BstMAI	GTCTC	2 cut(s)	308, 617
BstMBI	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
BstNI	CCWGG	6 cut(s)	93, 149, 244, 296, 468, 524
BstPAI	GACNNNNGTC	2 cut(s)	320, 689
BstSCI	CCNGG	7 cut(s)	91, 147, 242, 294, 466, 522, 1232
BstSLI	GKGCMC	1 cut(s)	1409
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	245, 502, 592, 1009, 1031, 1042, 1374
BstV2I	GAAGAC	2 cut(s)	506, 689
BtgI	CCRYGG	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	830
BtrI	CACGTC	2 cut(s)	280, 538
BtsCI	GGATG	4 cut(s)	858, 979, 1209, 1407
BtsIMutI	CAGTG	2 cut(s)	104, 860
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	4 cut(s)	16, 256, 747, 1416
CciI	TCATGA	1 cut(s)	1185
CfoI	GCGC	4 cut(s)	20, 161, 781, 1120
Cfr13I	GGNCC	4 cut(s)	45, 203, 363, 826
CseI	GACGC	2 cut(s)	310, 321
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	81, 343, 1186
CviQI	GTAC	1 cut(s)	86
DpnI	GATC	7 cut(s)	38, 60, 68, 404, 632, 1193, 1226
DpnII	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
EaeI	YGGCCR	3 cut(s)	94, 540, 786
EciI	GGCGGA	2 cut(s)	986, 1317
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	2 cut(s)	342, 528
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	363
Eco47III	AGCGCT	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	2 cut(s)	83, 1235
Eco88I	CYCGRG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	6 cut(s)	91, 147, 242, 294, 466, 522
EcoT14I	CCWWGG	2 cut(s)	342, 528
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	2 cut(s)	342, 528
Esp3I	CGTCTC	1 cut(s)	617
FaeI	CATG	3 cut(s)	84, 346, 1189
FaqI	GGGAC	4 cut(s)	376, 449, 1110, 1193
FatI	CATG	3 cut(s)	80, 342, 1185
FbaI	TGATCA	2 cut(s)	36, 1191
FblI	GTMKAC	1 cut(s)	534
FokI	GGATG	4 cut(s)	865, 986, 1216, 1414
FriOI	GRGCYC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	1221
GlaI	GCGC	4 cut(s)	19, 160, 780, 1119
HaeII	RGCGCY	2 cut(s)	21, 162
HapII	CCGG	3 cut(s)	48, 125, 1233
HgaI	GACGC	2 cut(s)	310, 321
HhaI	GCGC	4 cut(s)	20, 161, 781, 1120
Hin1I	GRCGYC	2 cut(s)	332, 462
Hin1II	CATG	3 cut(s)	84, 346, 1189
Hin6I	GCGC	4 cut(s)	18, 159, 779, 1118
HinP1I	GCGC	4 cut(s)	18, 159, 779, 1118
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	6 cut(s)	51, 316, 502, 640, 979, 1148
HpaII	CCGG	3 cut(s)	48, 125, 1233
HphI	GGTGA	4 cut(s)	46, 139, 323, 691
Hpy166II	GTNNAC	4 cut(s)	130, 460, 535, 700
Hpy188I	TCNGA	5 cut(s)	25, 63, 402, 507, 645
Hpy188III	TCNNGA	4 cut(s)	932, 1186, 1211, 1360
Hpy8I	GTNNAC	4 cut(s)	130, 460, 535, 700
Hpy99I	CGWCG	4 cut(s)	218, 284, 337, 539
HpyAV	CCTTC	8 cut(s)	70, 644, 658, 751, 799, 814, 1045, 1312
HpyCH4III	ACNGT	3 cut(s)	109, 1353, 1366
HpyCH4IV	ACGT	3 cut(s)	279, 462, 537
HpyCH4V	TGCA	5 cut(s)	440, 598, 835, 860, 1369
HpySE526I	ACGT	3 cut(s)	279, 462, 537
Hsp92I	GRCGYC	2 cut(s)	332, 462
Hsp92II	CATG	3 cut(s)	84, 346, 1189
HspAI	GCGC	4 cut(s)	18, 159, 779, 1118
Ksp22I	TGATCA	2 cut(s)	36, 1191
Kzo9I	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
LmnI	GCTCC	4 cut(s)	174, 252, 286, 575
Lsp1109I	GCAGC	7 cut(s)	245, 502, 592, 1009, 1031, 1042, 1374
LweI	GCATC	3 cut(s)	309, 607, 964
MaeI	CTAG	1 cut(s)	1221
MaeII	ACGT	3 cut(s)	279, 462, 537
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	7 cut(s)	38, 60, 68, 404, 632, 1193, 1226
MboI	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
MboII	GAAGA	7 cut(s)	76, 511, 640, 673, 694, 766, 1093
MhlI	GDGCHC	2 cut(s)	411, 1409
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	1396, 1423
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	4 cut(s)	310, 496, 634, 1142
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	2 cut(s)	447, 675
MslI	CAYNNNNRTG	1 cut(s)	1142
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	2 cut(s)	258, 1022
MspI	CCGG	3 cut(s)	48, 125, 1233
MspR9I	CCNGG	7 cut(s)	93, 149, 244, 296, 468, 524, 1234
Mva1269I	GAATGC	2 cut(s)	862, 1389
MvaI	CCWGG	6 cut(s)	93, 149, 244, 296, 468, 524
MvnI	CGCG	1 cut(s)	321
NciI	CCSGG	1 cut(s)	1234
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
NlaIII	CATG	3 cut(s)	84, 346, 1189
NlaIV	GGNNCC	5 cut(s)	46, 205, 248, 364, 571
NmeAIII	GCCGAG	7 cut(s)	187, 568, 646, 814, 913, 1051, 1117
NspV	TTCGAA	1 cut(s)	141
PagI	TCATGA	1 cut(s)	1185
PaqCI	CACCTGC	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 540
PctI	GAATGC	2 cut(s)	862, 1389
PfeI	GAWTC	2 cut(s)	51, 979
PleI	GAGTC	4 cut(s)	310, 496, 634, 1142
PpsI	GAGTC	4 cut(s)	310, 496, 634, 1142
PshAI	GACNNNNGTC	2 cut(s)	320, 689
PsiI	TTATAA	1 cut(s)	1338
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	6 cut(s)	91, 147, 242, 294, 466, 522
PspGI	CCWGG	6 cut(s)	91, 147, 242, 294, 466, 522
PspN4I	GGNNCC	5 cut(s)	46, 205, 248, 364, 571
PspPI	GGNCC	4 cut(s)	45, 203, 363, 826
PvuII	CAGCTG	2 cut(s)	258, 1022
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	1142
SacI	GAGCTC	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	447, 675
Sau3AI	GATC	7 cut(s)	36, 58, 66, 402, 630, 1191, 1224
Sau96I	GGNCC	4 cut(s)	45, 203, 363, 826
SchI	GAGTC	4 cut(s)	310, 496, 634, 1142
ScrFI	CCNGG	7 cut(s)	93, 149, 244, 296, 468, 524, 1234
SduI	GDGCHC	2 cut(s)	411, 1409
SfaNI	GCATC	3 cut(s)	309, 607, 964
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	1142
SmlI	CTYRAG	2 cut(s)	881, 930
SmoI	CTYRAG	2 cut(s)	881, 930
Sse9I	AATT	2 cut(s)	1396, 1423
SsiI	CCGC	9 cut(s)	809, 968, 971, 1238, 1299, 1302, 1310, 1325, 1391
SspMI	CTAG	1 cut(s)	1221
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	7 cut(s)	91, 147, 242, 294, 466, 522, 1232
StyI	CCWWGG	2 cut(s)	342, 528
TaaI	ACNGT	3 cut(s)	109, 1353, 1366
TaiI	ACGT	3 cut(s)	282, 465, 540
TaqI	TCGA	8 cut(s)	141, 272, 282, 306, 335, 390, 405, 534
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	2 cut(s)	1396, 1423
TauI	GCSGC	5 cut(s)	971, 1302, 1313, 1328, 1393
TfiI	GAWTC	2 cut(s)	51, 979
Tru1I	TTAA	2 cut(s)	447, 675
Tru9I	TTAA	2 cut(s)	447, 675
TscAI	CASTG	2 cut(s)	104, 867
TseI	GCWGC	7 cut(s)	258, 515, 605, 1019, 1022, 1055, 1387
TspDTI	ATGAA	6 cut(s)	569, 767, 833, 869, 1174, 1331
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	104, 867
VpaK11BI	GGWCC	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	1 cut(s)	1221
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.