homeobox protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32980 AT4G32980 |
| fragaria_vesca | FvH4_2g32060 FvH4_2g32060 |
| malus_domestica | MD08G1043600.v1.1 MD15G1061000.v1.1 |
| prunus_persica | Prupe.1G413700_v2.0.a1 |
| pyrus_communis | pycom08g03520 pycom15g05710 |
| rosa_chinensis | RchiOBHm_Chr6g0310681 |
| rosa_laevigata | RLG00000010465 |
| rosa_roxburghii | Rroxscaffold_7G00158350 |
| rosa_rugosa | Rorug06G0382200 Rorug06G0382200 Rorug06G0382300 Rorug06G0382400 Rorug06G0382500 |
| rosa_samantha | Rh6AG496200 Rh6BG505700 Rh6CG511400 Rh6DG497100 |
| rosa_wichuraiana | Rw6G043150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1559 |
| AccB1I | GGYRCC | 1 cut(s) | 1060 |
| AccBSI | CCGCTC | 2 cut(s) | 481, 1276 |
| AccI | GTMKAC | 1 cut(s) | 1025 |
| AccII | CGCG | 1 cut(s) | 485 |
| AciI | CCGC | 4 cut(s) | 32, 479, 485, 1276 |
| AclWI | GGATC | 6 cut(s) | 589, 626, 639, 916, 1205, 1428 |
| AcsI | RAATTY | 4 cut(s) | 43, 698, 1309, 1352 |
| AcuI | CTGAAG | 4 cut(s) | 417, 570, 762, 1358 |
| AfaI | GTAC | 6 cut(s) | 69, 96, 376, 554, 1484, 1604 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 136, 735, 1418, 1572 |
| AgsI | TTSAA | 8 cut(s) | 159, 294, 386, 451, 605, 1241, 1314, 1352 |
| AjiI | CACGTC | 1 cut(s) | 732 |
| AjnI | CCWGG | 3 cut(s) | 734, 998, 1539 |
| AleI | CACNNNNGTG | 1 cut(s) | 80 |
| AluBI | AGCT | 2 cut(s) | 560, 712 |
| AluI | AGCT | 2 cut(s) | 560, 712 |
| Alw26I | GTCTC | 3 cut(s) | 1199, 1402, 1444 |
| AlwI | GGATC | 6 cut(s) | 589, 626, 639, 916, 1205, 1428 |
| Ama87I | CYCGRG | 1 cut(s) | 1646 |
| AoxI | GGCC | 3 cut(s) | 486, 737, 1119 |
| ApeKI | GCWGC | 5 cut(s) | 36, 350, 362, 557, 1196 |
| ApoI | RAATTY | 4 cut(s) | 43, 698, 1309, 1352 |
| AseI | ATTAAT | 1 cut(s) | 426 |
| AspS9I | GGNCC | 1 cut(s) | 1120 |
| AsuHPI | GGTGA | 3 cut(s) | 113, 587, 813 |
| AvaI | CYCGRG | 1 cut(s) | 1646 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1164, 1197 |
| BamHI | GGATCC | 1 cut(s) | 631 |
| BanI | GGYRCC | 1 cut(s) | 1060 |
| BauI | CACGAG | 1 cut(s) | 1004 |
| BbvI | GCAGC | 5 cut(s) | 48, 337, 374, 569, 1183 |
| BccI | CCATC | 6 cut(s) | 53, 130, 572, 636, 650, 1040 |
| BciT130I | CCWGG | 3 cut(s) | 736, 1000, 1541 |
| BciVI | GTATCC | 1 cut(s) | 1555 |
| BcoDI | GTCTC | 3 cut(s) | 1199, 1402, 1444 |
| BfaI | CTAG | 3 cut(s) | 50, 837, 974 |
| BfuI | GTATCC | 1 cut(s) | 1555 |
| BisI | GCNGC | 6 cut(s) | 37, 351, 363, 486, 558, 1197 |
| BlsI | GCNGC | 6 cut(s) | 38, 352, 364, 487, 559, 1198 |
| BmcAI | AGTACT | 1 cut(s) | 376 |
| Bme1390I | CCNGG | 3 cut(s) | 736, 1000, 1541 |
| BmeT110I | CYCGRG | 1 cut(s) | 1646 |
| BmgBI | CACGTC | 1 cut(s) | 732 |
| BmgT120I | GGNCC | 1 cut(s) | 1120 |
| BmiI | GGNNCC | 3 cut(s) | 633, 1062, 1071 |
| BmrFI | CCNGG | 3 cut(s) | 736, 1000, 1541 |
| BmsI | GCATC | 2 cut(s) | 1122, 1331 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| BsaAI | YACGTR | 1 cut(s) | 1451 |
| BsaBI | GATNNNNATC | 2 cut(s) | 117, 646 |
| BsaI | GGTCTC | 1 cut(s) | 1402 |
| BsaJI | CCNNGG | 1 cut(s) | 1029 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 162, 192 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 136, 735, 1418, 1572 |
| Bse1I | ACTGG | 1 cut(s) | 149 |
| Bse3DI | GCAATG | 3 cut(s) | 271, 423, 1076 |
| Bse8I | GATNNNNATC | 2 cut(s) | 117, 646 |
| BseBI | CCWGG | 3 cut(s) | 736, 1000, 1541 |
| BseDI | CCNNGG | 1 cut(s) | 1029 |
| BseGI | GGATG | 7 cut(s) | 64, 647, 1026, 1039, 1322, 1464, 1477 |
| BseJI | GATNNNNATC | 2 cut(s) | 117, 646 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 136, 735, 1418, 1572 |
| BseMI | GCAATG | 3 cut(s) | 271, 423, 1076 |
| BseMII | CTCAG | 5 cut(s) | 899, 1002, 1259, 1427, 1455 |
| BseNI | ACTGG | 1 cut(s) | 149 |
| BseRI | GAGGAG | 1 cut(s) | 863 |
| BseXI | GCAGC | 5 cut(s) | 48, 337, 374, 569, 1183 |
| Bsh1236I | CGCG | 1 cut(s) | 485 |
| BshFI | GGCC | 3 cut(s) | 488, 739, 1121 |
| BshNI | GGYRCC | 1 cut(s) | 1060 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1646 |
| BsiSI | CCGG | 2 cut(s) | 29, 1573 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 136, 735, 1418, 1572 |
| BsmAI | GTCTC | 3 cut(s) | 1199, 1402, 1444 |
| BsmBI | CGTCTC | 1 cut(s) | 1444 |
| BsnI | GGCC | 3 cut(s) | 488, 739, 1121 |
| Bso31I | GGTCTC | 1 cut(s) | 1402 |
| BsoBI | CYCGRG | 1 cut(s) | 1646 |
| Bsp1407I | TGTACA | 1 cut(s) | 94 |
| Bsp143I | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| Bsp19I | CCATGG | 1 cut(s) | 1029 |
| BspACI | CCGC | 4 cut(s) | 32, 479, 485, 1276 |
| BspANI | GGCC | 3 cut(s) | 488, 739, 1121 |
| BspCNI | CTCAG | 5 cut(s) | 898, 1003, 1260, 1426, 1454 |
| BspFNI | CGCG | 1 cut(s) | 485 |
| BspLI | GGNNCC | 3 cut(s) | 633, 1062, 1071 |
| BspPI | GGATC | 6 cut(s) | 589, 626, 639, 916, 1205, 1428 |
| BspQI | GCTCTTC | 1 cut(s) | 1377 |
| BspT107I | GGYRCC | 1 cut(s) | 1060 |
| BspTNI | GGTCTC | 1 cut(s) | 1402 |
| BsrBI | CCGCTC | 2 cut(s) | 481, 1276 |
| BsrDI | GCAATG | 3 cut(s) | 271, 423, 1076 |
| BsrGI | TGTACA | 1 cut(s) | 94 |
| BsrI | ACTGG | 1 cut(s) | 149 |
| BssECI | CCNNGG | 1 cut(s) | 1029 |
| BssMI | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| BssSI | CACGAG | 1 cut(s) | 1004 |
| BssT1I | CCWWGG | 1 cut(s) | 1029 |
| Bst2BI | CACGAG | 1 cut(s) | 1004 |
| Bst2UI | CCWGG | 3 cut(s) | 736, 1000, 1541 |
| Bst4CI | ACNGT | 8 cut(s) | 82, 99, 131, 313, 537, 845, 869, 1177 |
| Bst6I | CTCTTC | 1 cut(s) | 1377 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1193 |
| BstAUI | TGTACA | 1 cut(s) | 94 |
| BstBAI | YACGTR | 1 cut(s) | 1451 |
| BstC8I | GCNNGC | 7 cut(s) | 34, 348, 483, 714, 1074, 1119, 1286 |
| BstDEI | CTNAG | 5 cut(s) | 885, 1011, 1268, 1413, 1441 |
| BstDSI | CCRYGG | 1 cut(s) | 1029 |
| BstF5I | GGATG | 7 cut(s) | 64, 647, 1026, 1039, 1322, 1464, 1477 |
| BstFNI | CGCG | 1 cut(s) | 485 |
| BstKTI | GATC | 8 cut(s) | 115, 199, 546, 584, 634, 911, 1213, 1436 |
| BstMAI | GTCTC | 3 cut(s) | 1199, 1402, 1444 |
| BstMBI | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 151, 347, 359, 413, 1069, 1078, 1193 |
| BstNI | CCWGG | 3 cut(s) | 736, 1000, 1541 |
| BstNSI | RCATGY | 1 cut(s) | 1508 |
| BstSCI | CCNGG | 3 cut(s) | 734, 998, 1539 |
| BstUI | CGCG | 1 cut(s) | 485 |
| BstV1I | GCAGC | 5 cut(s) | 48, 337, 374, 569, 1183 |
| BstX2I | RGATCY | 4 cut(s) | 581, 631, 1210, 1433 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 642, 742, 1117, 1694 |
| BstYI | RGATCY | 4 cut(s) | 581, 631, 1210, 1433 |
| BsuI | GTATCC | 1 cut(s) | 1555 |
| BsuRI | GGCC | 3 cut(s) | 488, 739, 1121 |
| BtgI | CCRYGG | 1 cut(s) | 1029 |
| BtrI | CACGTC | 1 cut(s) | 732 |
| BtsCI | GGATG | 7 cut(s) | 64, 647, 1026, 1039, 1322, 1464, 1477 |
| BtsIMutI | CAGTG | 5 cut(s) | 87, 156, 542, 850, 1449 |
| Cac8I | GCNNGC | 7 cut(s) | 34, 348, 483, 714, 1074, 1119, 1286 |
| Cfr13I | GGNCC | 1 cut(s) | 1120 |
| CseI | GACGC | 1 cut(s) | 446 |
| CsiI | ACCWGGT | 1 cut(s) | 1539 |
| Csp6I | GTAC | 6 cut(s) | 68, 95, 375, 553, 1483, 1603 |
| CviAII | CATG | 7 cut(s) | 55, 167, 923, 1030, 1193, 1455, 1505 |
| CviQI | GTAC | 6 cut(s) | 68, 95, 375, 553, 1483, 1603 |
| DdeI | CTNAG | 5 cut(s) | 885, 1011, 1268, 1413, 1441 |
| DpnI | GATC | 8 cut(s) | 114, 198, 545, 583, 633, 910, 1212, 1435 |
| DpnII | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| Eam1104I | CTCTTC | 1 cut(s) | 1377 |
| EarI | CTCTTC | 1 cut(s) | 1377 |
| Eco130I | CCWWGG | 1 cut(s) | 1029 |
| Eco147I | AGGCCT | 1 cut(s) | 739 |
| Eco31I | GGTCTC | 1 cut(s) | 1402 |
| Eco32I | GATATC | 1 cut(s) | 949 |
| Eco57I | CTGAAG | 4 cut(s) | 417, 570, 762, 1358 |
| Eco88I | CYCGRG | 1 cut(s) | 1646 |
| EcoRI | GAATTC | 1 cut(s) | 1352 |
| EcoRII | CCWGG | 3 cut(s) | 734, 998, 1539 |
| EcoRV | GATATC | 1 cut(s) | 949 |
| EcoT14I | CCWWGG | 1 cut(s) | 1029 |
| ErhI | CCWWGG | 1 cut(s) | 1029 |
| Esp3I | CGTCTC | 1 cut(s) | 1444 |
| FaeI | CATG | 7 cut(s) | 58, 170, 926, 1033, 1196, 1458, 1508 |
| FatI | CATG | 7 cut(s) | 54, 166, 922, 1029, 1192, 1454, 1504 |
| FauI | CCCGC | 2 cut(s) | 25, 1269 |
| FblI | GTMKAC | 1 cut(s) | 1025 |
| Fnu4HI | GCNGC | 6 cut(s) | 37, 351, 363, 486, 558, 1197 |
| FokI | GGATG | 7 cut(s) | 71, 654, 1033, 1046, 1309, 1464, 1471 |
| Fsp4HI | GCNGC | 6 cut(s) | 37, 351, 363, 486, 558, 1197 |
| FspBI | CTAG | 3 cut(s) | 50, 837, 974 |
| GluI | GCNGC | 6 cut(s) | 37, 351, 363, 486, 558, 1197 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 3 cut(s) | 488, 739, 1121 |
| HapII | CCGG | 2 cut(s) | 29, 1573 |
| HgaI | GACGC | 1 cut(s) | 446 |
| Hin1II | CATG | 7 cut(s) | 58, 170, 926, 1033, 1196, 1458, 1508 |
| HincII | GTYRAC | 1 cut(s) | 1026 |
| HindII | GTYRAC | 1 cut(s) | 1026 |
| HinfI | GANTC | 7 cut(s) | 185, 230, 235, 275, 802, 1168, 1493 |
| HpaII | CCGG | 2 cut(s) | 29, 1573 |
| HphI | GGTGA | 3 cut(s) | 113, 587, 813 |
| Hpy166II | GTNNAC | 2 cut(s) | 85, 1026 |
| Hpy188III | TCNNGA | 4 cut(s) | 386, 932, 974, 1648 |
| Hpy8I | GTNNAC | 2 cut(s) | 85, 1026 |
| HpyAV | CCTTC | 2 cut(s) | 1304, 1484 |
| HpyCH4III | ACNGT | 8 cut(s) | 82, 99, 131, 313, 537, 845, 869, 1177 |
| HpyCH4IV | ACGT | 3 cut(s) | 608, 731, 1450 |
| HpyCH4V | TGCA | 8 cut(s) | 362, 662, 876, 1076, 1199, 1322, 1454, 1514 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 151, 347, 359, 413, 1069, 1078, 1193 |
| HpyF3I | CTNAG | 5 cut(s) | 885, 1011, 1268, 1413, 1441 |
| HpySE526I | ACGT | 3 cut(s) | 608, 731, 1450 |
| Hsp92II | CATG | 7 cut(s) | 58, 170, 926, 1033, 1196, 1458, 1508 |
| Kzo9I | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| LguI | GCTCTTC | 1 cut(s) | 1377 |
| LmnI | GCTCC | 4 cut(s) | 261, 565, 1069, 1273 |
| Lsp1109I | GCAGC | 5 cut(s) | 48, 337, 374, 569, 1183 |
| LweI | GCATC | 2 cut(s) | 1122, 1331 |
| MabI | ACCWGGT | 1 cut(s) | 1539 |
| MaeI | CTAG | 3 cut(s) | 50, 837, 974 |
| MaeII | ACGT | 3 cut(s) | 608, 731, 1450 |
| MaeIII | GTNAC | 1 cut(s) | 1446 |
| MalI | GATC | 8 cut(s) | 114, 198, 545, 583, 633, 910, 1212, 1435 |
| MbiI | CCGCTC | 2 cut(s) | 481, 1276 |
| MboI | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| MfeI | CAATTG | 1 cut(s) | 1549 |
| MflI | RGATCY | 4 cut(s) | 581, 631, 1210, 1433 |
| MlyI | GAGTC | 1 cut(s) | 244 |
| MmeI | TCCRAC | 1 cut(s) | 601 |
| MseI | TTAA | 3 cut(s) | 201, 426, 1680 |
| MslI | CAYNNNNRTG | 1 cut(s) | 80 |
| MspI | CCGG | 2 cut(s) | 29, 1573 |
| MspR9I | CCNGG | 3 cut(s) | 736, 1000, 1541 |
| MunI | CAATTG | 1 cut(s) | 1549 |
| MvaI | CCWGG | 3 cut(s) | 736, 1000, 1541 |
| MvnI | CGCG | 1 cut(s) | 485 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 151, 347, 359, 413, 1069, 1078, 1193 |
| NcoI | CCATGG | 1 cut(s) | 1029 |
| NdeII | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| NlaIII | CATG | 7 cut(s) | 58, 170, 926, 1033, 1196, 1458, 1508 |
| NlaIV | GGNNCC | 3 cut(s) | 633, 1062, 1071 |
| NspI | RCATGY | 1 cut(s) | 1508 |
| OliI | CACNNNNGTG | 1 cut(s) | 80 |
| PaeR7I | CTCGAG | 1 cut(s) | 1646 |
| PceI | AGGCCT | 1 cut(s) | 739 |
| PciSI | GCTCTTC | 1 cut(s) | 1377 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 213, 1644 |
| PfeI | GAWTC | 6 cut(s) | 185, 230, 275, 802, 1168, 1493 |
| PkrI | GCNGC | 6 cut(s) | 38, 352, 364, 487, 559, 1198 |
| PleI | GAGTC | 1 cut(s) | 243 |
| PpsI | GAGTC | 1 cut(s) | 243 |
| Ppu21I | YACGTR | 1 cut(s) | 1451 |
| PshBI | ATTAAT | 1 cut(s) | 426 |
| PsiI | TTATAA | 1 cut(s) | 1559 |
| Psp6I | CCWGG | 3 cut(s) | 734, 998, 1539 |
| PspGI | CCWGG | 3 cut(s) | 734, 998, 1539 |
| PspN4I | GGNNCC | 3 cut(s) | 633, 1062, 1071 |
| PspPI | GGNCC | 1 cut(s) | 1120 |
| PsuI | RGATCY | 4 cut(s) | 581, 631, 1210, 1433 |
| RsaI | GTAC | 6 cut(s) | 69, 96, 376, 554, 1484, 1604 |
| RsaNI | GTAC | 6 cut(s) | 68, 95, 375, 553, 1483, 1603 |
| RseI | CAYNNNNRTG | 1 cut(s) | 80 |
| SalI | GTCGAC | 1 cut(s) | 1024 |
| SapI | GCTCTTC | 1 cut(s) | 1377 |
| SaqAI | TTAA | 3 cut(s) | 201, 426, 1680 |
| SatI | GCNGC | 6 cut(s) | 37, 351, 363, 486, 558, 1197 |
| Sau3AI | GATC | 8 cut(s) | 112, 196, 543, 581, 631, 908, 1210, 1433 |
| Sau96I | GGNCC | 1 cut(s) | 1120 |
| ScaI | AGTACT | 1 cut(s) | 376 |
| SchI | GAGTC | 1 cut(s) | 244 |
| ScrFI | CCNGG | 3 cut(s) | 736, 1000, 1541 |
| SexAI | ACCWGGT | 1 cut(s) | 1539 |
| SfaNI | GCATC | 2 cut(s) | 1122, 1331 |
| Sfr274I | CTCGAG | 1 cut(s) | 1646 |
| SlaI | CTCGAG | 1 cut(s) | 1646 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 80 |
| SmlI | CTYRAG | 1 cut(s) | 1646 |
| SmoI | CTYRAG | 1 cut(s) | 1646 |
| SseBI | AGGCCT | 1 cut(s) | 739 |
| SsiI | CCGC | 4 cut(s) | 32, 479, 485, 1276 |
| SspI | AATATT | 1 cut(s) | 833 |
| SspMI | CTAG | 3 cut(s) | 50, 837, 974 |
| StuI | AGGCCT | 1 cut(s) | 739 |
| StyD4I | CCNGG | 3 cut(s) | 734, 998, 1539 |
| StyI | CCWWGG | 1 cut(s) | 1029 |
| TaaI | ACNGT | 8 cut(s) | 82, 99, 131, 313, 537, 845, 869, 1177 |
| TaiI | ACGT | 3 cut(s) | 611, 734, 1453 |
| TaqI | TCGA | 5 cut(s) | 233, 983, 1025, 1161, 1647 |
| TatI | WGTACW | 3 cut(s) | 94, 374, 1602 |
| TauI | GCSGC | 1 cut(s) | 488 |
| TfiI | GAWTC | 6 cut(s) | 185, 230, 275, 802, 1168, 1493 |
| Tru1I | TTAA | 3 cut(s) | 201, 426, 1680 |
| Tru9I | TTAA | 3 cut(s) | 201, 426, 1680 |
| TscAI | CASTG | 5 cut(s) | 87, 156, 542, 850, 1449 |
| TseI | GCWGC | 5 cut(s) | 36, 350, 362, 557, 1196 |
| TspDTI | ATGAA | 9 cut(s) | 155, 525, 603, 911, 981, 1160, 1181, 1466, 1628 |
| TspGWI | ACGGA | 2 cut(s) | 1426, 1470 |
| TspRI | CASTG | 5 cut(s) | 87, 156, 542, 850, 1449 |
| VspI | ATTAAT | 1 cut(s) | 426 |
| XapI | RAATTY | 4 cut(s) | 43, 698, 1309, 1352 |
| XbaI | TCTAGA | 1 cut(s) | 973 |
| XceI | RCATGY | 1 cut(s) | 1508 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 902 |
| XhoI | CTCGAG | 1 cut(s) | 1646 |
| XmiI | GTMKAC | 1 cut(s) | 1025 |
| XspI | CTAG | 3 cut(s) | 50, 837, 974 |
| ZrmI | AGTACT | 1 cut(s) | 376 |