MD15G1061000.v1.1

homeobox protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
4101738 .. 4105133
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1061000.v1.1.491

Sequence Viewer

Length: 1707 bp
ATGATGGATAATGAGATGTATAATGTTCCGGCGGGCAGCCGAAATTCTCTAGTCATGGATGGGGTTGTACCACACACCACAGTGAACTCTCTTGTACAGTCCTATTCCTTTGATCTCAATCACCAAAACCGTATGATGGCTTTGCCTCCAGTGCTTTCAACCTTTCATGGAGAACCTGTCGTGGATTCTCATTCTGATCTTAACAACGCAAACTGCGTTAGTGTGGCTGAATCGAGTCCATTTCTTATTTCTCAAAGAGGGAGCAATGTGAGAGAATCCTCATTCGTCAGTTCAAGTTTCGCTGATAATACGGTGTTCCAAGCAACACCACATTCTTCTGCCTCGCTTGCTGCCCTTTTTGCAGCGAGGGGTAGTACTATTCTTCAAGAAAATCTCAATAATTTAGCGATTTCAGCAATGCCGATTAATTCTTCAGACGCTTATGTTTTGAATGACTGCTCTAACAACTCCAATTCTCCGCTCGCGGCCTCTGTGAATTGTGGATATGATGAAATGCTTGGTAGCGTAAATAGACAGTGGGAGATCAACAAGTACGCAGCTCCTTTGGAACTTGGTGATGGATCTTCAGTAAGAATAGGGCTTCAAACGTATTCATCTGTTGGAAATGTGGATCCAAATGGATGGTTATCATCAGATGGTGCAAGTGTGATGACATATAATTCTTCCAATTCCTCCAAATTTAGCAACGAGCTTGCTCTAACTCTTGCCACGTCCAGGCCTTTGGAAATCCGAAATCAATGTTCAGATGTTGGTTCTTCAGGGATTGCTCAACCTTGTCTGAATCAAATAAGGTTTGCCTCACCAGAGCAATATTCTAGCAACAGTGAGGAGTTTTCCCTAAATTACGGTTCTTGCAAACCACCTCAGTTATCCCAAGTAATATGTGGATCAAAATATCTTCATGTGGTTCAGGAAATGCTTTCTGATATCGCAAACTATTCTTTAGAAAATCTAGACCAATCGAGTTTTTCATCTGCCAGGCTCGTGTCTGAGAGAGGGATGTCGACCATGGATGATGATTTAGATGGTAGATTTGAGGTGCCAAAGGAGCCTGCATTGCGAAAACAGGAAATCAAAACAAAGAAAACCAAATTGCTGGCCCTTTTACAGATGCTTGATGACTGCTACAACCAATGTGTCGATGAGATTCATACAGTTGTATCAGCATTTCATGCTGCAACCGAGACAGATCCTCATATACACGCTCGTTTTGTGCTTCAAACTATTTCTGTGCTGTATAATAGTCTGAGGGAGCGGGTTAGCACGCATTTCCTTCTGATAAGTGAAAATTCAAGCCCTGCATCCCCCAATGAGAGCGAAAGGTCTTTTGAATTCCATAAGCAGTTGGCTCTTCAGCAACTAAAGAAGAAAGAACATCAAATATGGAGACCTCAGAGGGGTTTGCCTGAAAGATCCGTCTCAGTGTTACGTGCATGGATGTTTCAGAACTTCCTTCATCCGTACCCTAAAGATTCGGAGAAGCATGTTCTTGCAGTAAAAAGTGGATTGACAAGAAACCAGGTATCCAATTGGTTTATAAATGCCCGTGTCCGGCTATGGAAACCGATGATTGAGGAAATGTACTCGGAGATGAACCGAAGAAAGACCCGTCAAAACGAAAACCTCGAGAGAACCCACAGAAGCCACCACATTAGGATTAACAACCACAAGTTTGGTGTGAATTGA

Protein Analysis

569

Amino Acids

63.5

Weight (kDa)

6.26

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 301 - 428 5.5e-26 Associated with HOX
Homeobox_KN PF05920 486 - 525 9.2e-17 Homeobox KN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1559
AccB1I GGYRCC 1 cut(s) 1060
AccBSI CCGCTC 2 cut(s) 481, 1276
AccI GTMKAC 1 cut(s) 1025
AccII CGCG 1 cut(s) 485
AciI CCGC 4 cut(s) 32, 479, 485, 1276
AclWI GGATC 6 cut(s) 589, 626, 639, 916, 1205, 1428
AcsI RAATTY 4 cut(s) 43, 698, 1309, 1352
AcuI CTGAAG 4 cut(s) 417, 570, 762, 1358
AfaI GTAC 6 cut(s) 69, 96, 376, 554, 1484, 1604
AfiI CCNNNNNNNGG 4 cut(s) 136, 735, 1418, 1572
AgsI TTSAA 8 cut(s) 159, 294, 386, 451, 605, 1241, 1314, 1352
AjiI CACGTC 1 cut(s) 732
AjnI CCWGG 3 cut(s) 734, 998, 1539
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 2 cut(s) 560, 712
AluI AGCT 2 cut(s) 560, 712
Alw26I GTCTC 3 cut(s) 1199, 1402, 1444
AlwI GGATC 6 cut(s) 589, 626, 639, 916, 1205, 1428
Ama87I CYCGRG 1 cut(s) 1646
AoxI GGCC 3 cut(s) 486, 737, 1119
ApeKI GCWGC 5 cut(s) 36, 350, 362, 557, 1196
ApoI RAATTY 4 cut(s) 43, 698, 1309, 1352
AseI ATTAAT 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 1120
AsuHPI GGTGA 3 cut(s) 113, 587, 813
AvaI CYCGRG 1 cut(s) 1646
BaeI ACNNNNGTAYC 2 cut(s) 1164, 1197
BamHI GGATCC 1 cut(s) 631
BanI GGYRCC 1 cut(s) 1060
BauI CACGAG 1 cut(s) 1004
BbvI GCAGC 5 cut(s) 48, 337, 374, 569, 1183
BccI CCATC 6 cut(s) 53, 130, 572, 636, 650, 1040
BciT130I CCWGG 3 cut(s) 736, 1000, 1541
BciVI GTATCC 1 cut(s) 1555
BcoDI GTCTC 3 cut(s) 1199, 1402, 1444
BfaI CTAG 3 cut(s) 50, 837, 974
BfuI GTATCC 1 cut(s) 1555
BisI GCNGC 6 cut(s) 37, 351, 363, 486, 558, 1197
BlsI GCNGC 6 cut(s) 38, 352, 364, 487, 559, 1198
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 3 cut(s) 736, 1000, 1541
BmeT110I CYCGRG 1 cut(s) 1646
BmgBI CACGTC 1 cut(s) 732
BmgT120I GGNCC 1 cut(s) 1120
BmiI GGNNCC 3 cut(s) 633, 1062, 1071
BmrFI CCNGG 3 cut(s) 736, 1000, 1541
BmsI GCATC 2 cut(s) 1122, 1331
BpmI CTGGAG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 1451
BsaBI GATNNNNATC 2 cut(s) 117, 646
BsaI GGTCTC 1 cut(s) 1402
BsaJI CCNNGG 1 cut(s) 1029
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 735, 1418, 1572
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 3 cut(s) 271, 423, 1076
Bse8I GATNNNNATC 2 cut(s) 117, 646
BseBI CCWGG 3 cut(s) 736, 1000, 1541
BseDI CCNNGG 1 cut(s) 1029
BseGI GGATG 7 cut(s) 64, 647, 1026, 1039, 1322, 1464, 1477
BseJI GATNNNNATC 2 cut(s) 117, 646
BseLI CCNNNNNNNGG 4 cut(s) 136, 735, 1418, 1572
BseMI GCAATG 3 cut(s) 271, 423, 1076
BseMII CTCAG 5 cut(s) 899, 1002, 1259, 1427, 1455
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 5 cut(s) 48, 337, 374, 569, 1183
Bsh1236I CGCG 1 cut(s) 485
BshFI GGCC 3 cut(s) 488, 739, 1121
BshNI GGYRCC 1 cut(s) 1060
BsiHKCI CYCGRG 1 cut(s) 1646
BsiSI CCGG 2 cut(s) 29, 1573
BslI CCNNNNNNNGG 4 cut(s) 136, 735, 1418, 1572
BsmAI GTCTC 3 cut(s) 1199, 1402, 1444
BsmBI CGTCTC 1 cut(s) 1444
BsnI GGCC 3 cut(s) 488, 739, 1121
Bso31I GGTCTC 1 cut(s) 1402
BsoBI CYCGRG 1 cut(s) 1646
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 4 cut(s) 32, 479, 485, 1276
BspANI GGCC 3 cut(s) 488, 739, 1121
BspCNI CTCAG 5 cut(s) 898, 1003, 1260, 1426, 1454
BspFNI CGCG 1 cut(s) 485
BspLI GGNNCC 3 cut(s) 633, 1062, 1071
BspPI GGATC 6 cut(s) 589, 626, 639, 916, 1205, 1428
BspQI GCTCTTC 1 cut(s) 1377
BspT107I GGYRCC 1 cut(s) 1060
BspTNI GGTCTC 1 cut(s) 1402
BsrBI CCGCTC 2 cut(s) 481, 1276
BsrDI GCAATG 3 cut(s) 271, 423, 1076
BsrGI TGTACA 1 cut(s) 94
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 1029
BssMI GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
BssSI CACGAG 1 cut(s) 1004
BssT1I CCWWGG 1 cut(s) 1029
Bst2BI CACGAG 1 cut(s) 1004
Bst2UI CCWGG 3 cut(s) 736, 1000, 1541
Bst4CI ACNGT 8 cut(s) 82, 99, 131, 313, 537, 845, 869, 1177
Bst6I CTCTTC 1 cut(s) 1377
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstAUI TGTACA 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 1451
BstC8I GCNNGC 7 cut(s) 34, 348, 483, 714, 1074, 1119, 1286
BstDEI CTNAG 5 cut(s) 885, 1011, 1268, 1413, 1441
BstDSI CCRYGG 1 cut(s) 1029
BstF5I GGATG 7 cut(s) 64, 647, 1026, 1039, 1322, 1464, 1477
BstFNI CGCG 1 cut(s) 485
BstKTI GATC 8 cut(s) 115, 199, 546, 584, 634, 911, 1213, 1436
BstMAI GTCTC 3 cut(s) 1199, 1402, 1444
BstMBI GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
BstMWI GCNNNNNNNGC 7 cut(s) 151, 347, 359, 413, 1069, 1078, 1193
BstNI CCWGG 3 cut(s) 736, 1000, 1541
BstNSI RCATGY 1 cut(s) 1508
BstSCI CCNGG 3 cut(s) 734, 998, 1539
BstUI CGCG 1 cut(s) 485
BstV1I GCAGC 5 cut(s) 48, 337, 374, 569, 1183
BstX2I RGATCY 4 cut(s) 581, 631, 1210, 1433
BstXI CCANNNNNNTGG 4 cut(s) 642, 742, 1117, 1694
BstYI RGATCY 4 cut(s) 581, 631, 1210, 1433
BsuI GTATCC 1 cut(s) 1555
BsuRI GGCC 3 cut(s) 488, 739, 1121
BtgI CCRYGG 1 cut(s) 1029
BtrI CACGTC 1 cut(s) 732
BtsCI GGATG 7 cut(s) 64, 647, 1026, 1039, 1322, 1464, 1477
BtsIMutI CAGTG 5 cut(s) 87, 156, 542, 850, 1449
Cac8I GCNNGC 7 cut(s) 34, 348, 483, 714, 1074, 1119, 1286
Cfr13I GGNCC 1 cut(s) 1120
CseI GACGC 1 cut(s) 446
CsiI ACCWGGT 1 cut(s) 1539
Csp6I GTAC 6 cut(s) 68, 95, 375, 553, 1483, 1603
CviAII CATG 7 cut(s) 55, 167, 923, 1030, 1193, 1455, 1505
CviQI GTAC 6 cut(s) 68, 95, 375, 553, 1483, 1603
DdeI CTNAG 5 cut(s) 885, 1011, 1268, 1413, 1441
DpnI GATC 8 cut(s) 114, 198, 545, 583, 633, 910, 1212, 1435
DpnII GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
Eam1104I CTCTTC 1 cut(s) 1377
EarI CTCTTC 1 cut(s) 1377
Eco130I CCWWGG 1 cut(s) 1029
Eco147I AGGCCT 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 1402
Eco32I GATATC 1 cut(s) 949
Eco57I CTGAAG 4 cut(s) 417, 570, 762, 1358
Eco88I CYCGRG 1 cut(s) 1646
EcoRI GAATTC 1 cut(s) 1352
EcoRII CCWGG 3 cut(s) 734, 998, 1539
EcoRV GATATC 1 cut(s) 949
EcoT14I CCWWGG 1 cut(s) 1029
ErhI CCWWGG 1 cut(s) 1029
Esp3I CGTCTC 1 cut(s) 1444
FaeI CATG 7 cut(s) 58, 170, 926, 1033, 1196, 1458, 1508
FatI CATG 7 cut(s) 54, 166, 922, 1029, 1192, 1454, 1504
FauI CCCGC 2 cut(s) 25, 1269
FblI GTMKAC 1 cut(s) 1025
Fnu4HI GCNGC 6 cut(s) 37, 351, 363, 486, 558, 1197
FokI GGATG 7 cut(s) 71, 654, 1033, 1046, 1309, 1464, 1471
Fsp4HI GCNGC 6 cut(s) 37, 351, 363, 486, 558, 1197
FspBI CTAG 3 cut(s) 50, 837, 974
GluI GCNGC 6 cut(s) 37, 351, 363, 486, 558, 1197
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 3 cut(s) 488, 739, 1121
HapII CCGG 2 cut(s) 29, 1573
HgaI GACGC 1 cut(s) 446
Hin1II CATG 7 cut(s) 58, 170, 926, 1033, 1196, 1458, 1508
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HinfI GANTC 7 cut(s) 185, 230, 235, 275, 802, 1168, 1493
HpaII CCGG 2 cut(s) 29, 1573
HphI GGTGA 3 cut(s) 113, 587, 813
Hpy166II GTNNAC 2 cut(s) 85, 1026
Hpy188III TCNNGA 4 cut(s) 386, 932, 974, 1648
Hpy8I GTNNAC 2 cut(s) 85, 1026
HpyAV CCTTC 2 cut(s) 1304, 1484
HpyCH4III ACNGT 8 cut(s) 82, 99, 131, 313, 537, 845, 869, 1177
HpyCH4IV ACGT 3 cut(s) 608, 731, 1450
HpyCH4V TGCA 8 cut(s) 362, 662, 876, 1076, 1199, 1322, 1454, 1514
HpyF10VI GCNNNNNNNGC 7 cut(s) 151, 347, 359, 413, 1069, 1078, 1193
HpyF3I CTNAG 5 cut(s) 885, 1011, 1268, 1413, 1441
HpySE526I ACGT 3 cut(s) 608, 731, 1450
Hsp92II CATG 7 cut(s) 58, 170, 926, 1033, 1196, 1458, 1508
Kzo9I GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
LguI GCTCTTC 1 cut(s) 1377
LmnI GCTCC 4 cut(s) 261, 565, 1069, 1273
Lsp1109I GCAGC 5 cut(s) 48, 337, 374, 569, 1183
LweI GCATC 2 cut(s) 1122, 1331
MabI ACCWGGT 1 cut(s) 1539
MaeI CTAG 3 cut(s) 50, 837, 974
MaeII ACGT 3 cut(s) 608, 731, 1450
MaeIII GTNAC 1 cut(s) 1446
MalI GATC 8 cut(s) 114, 198, 545, 583, 633, 910, 1212, 1435
MbiI CCGCTC 2 cut(s) 481, 1276
MboI GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
MfeI CAATTG 1 cut(s) 1549
MflI RGATCY 4 cut(s) 581, 631, 1210, 1433
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 601
MseI TTAA 3 cut(s) 201, 426, 1680
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 2 cut(s) 29, 1573
MspR9I CCNGG 3 cut(s) 736, 1000, 1541
MunI CAATTG 1 cut(s) 1549
MvaI CCWGG 3 cut(s) 736, 1000, 1541
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 7 cut(s) 151, 347, 359, 413, 1069, 1078, 1193
NcoI CCATGG 1 cut(s) 1029
NdeII GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
NlaIII CATG 7 cut(s) 58, 170, 926, 1033, 1196, 1458, 1508
NlaIV GGNNCC 3 cut(s) 633, 1062, 1071
NspI RCATGY 1 cut(s) 1508
OliI CACNNNNGTG 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 1646
PceI AGGCCT 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 1377
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 1644
PfeI GAWTC 6 cut(s) 185, 230, 275, 802, 1168, 1493
PkrI GCNGC 6 cut(s) 38, 352, 364, 487, 559, 1198
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 1451
PshBI ATTAAT 1 cut(s) 426
PsiI TTATAA 1 cut(s) 1559
Psp6I CCWGG 3 cut(s) 734, 998, 1539
PspGI CCWGG 3 cut(s) 734, 998, 1539
PspN4I GGNNCC 3 cut(s) 633, 1062, 1071
PspPI GGNCC 1 cut(s) 1120
PsuI RGATCY 4 cut(s) 581, 631, 1210, 1433
RsaI GTAC 6 cut(s) 69, 96, 376, 554, 1484, 1604
RsaNI GTAC 6 cut(s) 68, 95, 375, 553, 1483, 1603
RseI CAYNNNNRTG 1 cut(s) 80
SalI GTCGAC 1 cut(s) 1024
SapI GCTCTTC 1 cut(s) 1377
SaqAI TTAA 3 cut(s) 201, 426, 1680
SatI GCNGC 6 cut(s) 37, 351, 363, 486, 558, 1197
Sau3AI GATC 8 cut(s) 112, 196, 543, 581, 631, 908, 1210, 1433
Sau96I GGNCC 1 cut(s) 1120
ScaI AGTACT 1 cut(s) 376
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 3 cut(s) 736, 1000, 1541
SexAI ACCWGGT 1 cut(s) 1539
SfaNI GCATC 2 cut(s) 1122, 1331
Sfr274I CTCGAG 1 cut(s) 1646
SlaI CTCGAG 1 cut(s) 1646
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 1646
SmoI CTYRAG 1 cut(s) 1646
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 4 cut(s) 32, 479, 485, 1276
SspI AATATT 1 cut(s) 833
SspMI CTAG 3 cut(s) 50, 837, 974
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 3 cut(s) 734, 998, 1539
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 8 cut(s) 82, 99, 131, 313, 537, 845, 869, 1177
TaiI ACGT 3 cut(s) 611, 734, 1453
TaqI TCGA 5 cut(s) 233, 983, 1025, 1161, 1647
TatI WGTACW 3 cut(s) 94, 374, 1602
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 6 cut(s) 185, 230, 275, 802, 1168, 1493
Tru1I TTAA 3 cut(s) 201, 426, 1680
Tru9I TTAA 3 cut(s) 201, 426, 1680
TscAI CASTG 5 cut(s) 87, 156, 542, 850, 1449
TseI GCWGC 5 cut(s) 36, 350, 362, 557, 1196
TspDTI ATGAA 9 cut(s) 155, 525, 603, 911, 981, 1160, 1181, 1466, 1628
TspGWI ACGGA 2 cut(s) 1426, 1470
TspRI CASTG 5 cut(s) 87, 156, 542, 850, 1449
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 4 cut(s) 43, 698, 1309, 1352
XbaI TCTAGA 1 cut(s) 973
XceI RCATGY 1 cut(s) 1508
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XhoI CTCGAG 1 cut(s) 1646
XmiI GTMKAC 1 cut(s) 1025
XspI CTAG 3 cut(s) 50, 837, 974
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.