Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020152

Physical Location & Seq

Genomic Coordinates Forward (+)

16829326 .. 16830692

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCTAGTTATATGCACCCTCTTCTAGGGCAAGAACTGCATCTACAGAGACCTGAAGATTCCAGAACCCCACCTGATCAAAATAACATGGAACTTAACAGATCTGAAGCAGACGAAGCAAAGGCCGAGACCACTCCCACCGGTGGAGCCACCAGCTCAGCCACAGCCTCTGGCTCTTCCTCCGGACGTCGTCCACGTGGTCGTCCTGCAGGTTCCAAAAACAAACCCAAACCTCCGACGATTATAACTAGAGATAGTCCTAACGTCCTTAGATCACACGTTCTTGAAGTCACCTCCGGTTCGGACATATCCGAGGCAGTCTCCACCTACGCCACTCGTCGCGGCTGCGGCGTTTGCATTATAAGCGGCACGGGTGCGGTCACTAACGTCACGATACGGCAACCTGCGGCTCCGGCTGGTGGAGGTGTGATTACCCTGCATGGTCGGTTTGACATTTTGTCTTTGACCGGTACTGCGCTTCCACCGCCTGCACCACCGGGAGCAGGAGGTTTGACGGTGTATCTAGCCGGAGGTCAAGGACAAGTTGTAGGAGGGAATGTGGCTGGTTCGTTAATTGCTTCGGGACCGGTAGTGTTGATGGCTGCTTCTTTTGCAAACGCAGTTTATGATAGGTTACCGATTGAAGAGGAAGAAACCCCACCGCCGAGAACCACCGGGGTGCAGCAGCAGCAGCCGGAGGCGTCTCAGTCGTCGGAGGTTACGGGGAGTGGGGCCCAGGCGTGTGAGTCAAACCTCCAAGGTGGAAATGGTGGAGGAGGTGTTGCTTTCTACAATCTTGGAATGAATATGAACAATTTTCAATTCTCCGGGGGAGATATTTACGGTATGAGCGGCGGTAGCGGAGGAGGTGGTGGCGGTGCGACTAGACCCGCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

299

Amino Acids

30.15

Weight (kDa)

5.83

Isoelectric Point (pI)

64.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	91 - 205	3.4e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35390
malus_domestica	MD05G1144000.v1.1 MD10G1143600.v1.1
prunus_persica	Prupe.8G182400_v2.0.a1
pyrus_communis	pycom05g13830 pycom10g12360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	245, 362
AatII	GACGTC	1 cut(s)	190
Acc36I	ACCTGC	2 cut(s)	200, 412
AccBSI	CCGCTC	1 cut(s)	852
AccII	CGCG	2 cut(s)	342, 893
AccIII	TCCGGA	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	75, 126
AcvI	CACGTG	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	187, 701
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	4 cut(s)	26, 143, 419, 503
AflIII	ACRYGT	1 cut(s)	277
AgeI	ACCGGT	3 cut(s)	140, 467, 586
AgsI	TTSAA	3 cut(s)	287, 644, 821
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	735
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw26I	GTCTC	4 cut(s)	43, 122, 325, 708
AlwNI	CAGNNNCTG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	182
AoxI	GGCC	2 cut(s)	123, 732
ApaI	GGGCCC	1 cut(s)	736
ApeKI	GCWGC	6 cut(s)	345, 602, 682, 685, 688, 691
AsiGI	ACCGGT	3 cut(s)	140, 467, 586
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	584, 732, 733
AsuC2I	CCSGG	3 cut(s)	498, 676, 829
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	736
BbrPI	CACGTG	1 cut(s)	197
BbvI	GCAGC	6 cut(s)	332, 589, 694, 697, 700, 703
BccI	CCATC	1 cut(s)	592
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	737
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	3 cut(s)	498, 676, 829
BcoDI	GTCTC	4 cut(s)	43, 122, 325, 708
BfaI	CTAG	5 cut(s)	6, 26, 249, 524, 885
BfmI	CTRYAG	2 cut(s)	44, 207
BfuAI	ACCTGC	2 cut(s)	200, 412
BglII	AGATCT	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	157
Bme1390I	CCNGG	4 cut(s)	498, 676, 737, 829
Bme18I	GGWCC	1 cut(s)	584
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmgT120I	GGNCC	3 cut(s)	584, 732, 733
BmiI	GGNNCC	6 cut(s)	148, 214, 411, 585, 733, 734
BmrFI	CCNGG	4 cut(s)	498, 676, 737, 829
BmsI	GCATC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu1102I	GCTNAGC	1 cut(s)	157
BpuMI	CCSGG	3 cut(s)	498, 676, 829
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	187, 701
BsaI	GGTCTC	2 cut(s)	43, 122
BsaJI	CCNNGG	5 cut(s)	312, 675, 735, 757, 828
BsaWI	WCCGGW	5 cut(s)	140, 182, 296, 467, 586
BsaXI	ACNNNNNCTCC	4 cut(s)	543, 573, 765, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 143, 419, 503
Bse118I	RCCGGY	3 cut(s)	140, 467, 586
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	5 cut(s)	312, 675, 735, 757, 828
BseLI	CCNNNNNNNGG	4 cut(s)	26, 143, 419, 503
BseMII	CTCAG	2 cut(s)	171, 719
BseRI	GAGGAG	2 cut(s)	789, 879
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	6 cut(s)	332, 589, 694, 697, 700, 703
BsgI	GTGCAG	2 cut(s)	474, 701
Bsh1236I	CGCG	2 cut(s)	342, 893
BshFI	GGCC	2 cut(s)	125, 734
BshTI	ACCGGT	3 cut(s)	140, 467, 586
BslFI	GGGAC	1 cut(s)	597
BslI	CCNNNNNNNGG	4 cut(s)	26, 143, 419, 503
BsmAI	GTCTC	4 cut(s)	43, 122, 325, 708
BsmBI	CGTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	597
BsnI	GGCC	2 cut(s)	125, 734
Bso31I	GGTCTC	2 cut(s)	43, 122
Bsp120I	GGGCCC	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	76, 101, 272
Bsp1720I	GCTNAGC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	125, 734
BspCNI	CTCAG	2 cut(s)	170, 718
BspEI	TCCGGA	1 cut(s)	182
BspFNI	CGCG	2 cut(s)	342, 893
BspLI	GGNNCC	6 cut(s)	148, 214, 411, 585, 733, 734
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	2 cut(s)	200, 412
BspQI	GCTCTTC	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	43, 122
BsrBI	CCGCTC	1 cut(s)	852
BsrFI	RCCGGY	3 cut(s)	140, 467, 586
BssAI	RCCGGY	3 cut(s)	140, 467, 586
BssECI	CCNNGG	5 cut(s)	312, 675, 735, 757, 828
BssMI	GATC	3 cut(s)	76, 101, 272
BssNI	GRCGYC	2 cut(s)	187, 701
BssT1I	CCWWGG	1 cut(s)	757
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	2 cut(s)	517, 845
Bst6I	CTCTTC	3 cut(s)	27, 181, 639
BstACI	GRCGYC	2 cut(s)	187, 701
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	3 cut(s)	157, 269, 705
BstEII	GGTNACC	1 cut(s)	633
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstFNI	CGCG	2 cut(s)	342, 893
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	3 cut(s)	79, 104, 275
BstMAI	GTCTC	4 cut(s)	43, 122, 325, 708
BstMBI	GATC	3 cut(s)	76, 101, 272
BstNI	CCWGG	1 cut(s)	737
BstPI	GGTNACC	1 cut(s)	633
BstSCI	CCNGG	4 cut(s)	496, 674, 735, 827
BstSFI	CTRYAG	2 cut(s)	44, 207
BstSLI	GKGCMC	1 cut(s)	736
BstUI	CGCG	2 cut(s)	342, 893
BstV1I	GCAGC	6 cut(s)	332, 589, 694, 697, 700, 703
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	125, 734
BveI	ACCTGC	2 cut(s)	200, 412
Cac8I	GCNNGC	1 cut(s)	489
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	3 cut(s)	140, 467, 586
Cfr13I	GGNCC	3 cut(s)	584, 732, 733
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	1 cut(s)	471
CspAI	ACCGGT	3 cut(s)	140, 467, 586
CviAII	CATG	2 cut(s)	88, 440
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	3 cut(s)	157, 269, 705
DpnI	GATC	3 cut(s)	78, 103, 274
DpnII	GATC	3 cut(s)	76, 101, 272
DriI	GACNNNNNGTC	1 cut(s)	457
Eam1104I	CTCTTC	3 cut(s)	27, 181, 639
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	3 cut(s)	27, 181, 639
Eco130I	CCWWGG	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	736
Eco31I	GGTCTC	2 cut(s)	43, 122
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	2 cut(s)	75, 126
Eco72I	CACGTG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	732
EcoO65I	GGTNACC	1 cut(s)	633
EcoRII	CCWGG	1 cut(s)	735
EcoT14I	CCWWGG	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	757
Esp3I	CGTCTC	1 cut(s)	708
FaeI	CATG	2 cut(s)	91, 443
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	2 cut(s)	87, 439
FauI	CCCGC	1 cut(s)	898
FbaI	TGATCA	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	736
FspBI	CTAG	5 cut(s)	6, 26, 249, 524, 885
GlaI	GCGC	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	125, 734
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	2 cut(s)	187, 701
Hin1II	CATG	2 cut(s)	91, 443
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	2 cut(s)	59, 746
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	5 cut(s)	106, 237, 304, 313, 715
Hpy188III	TCNNGA	5 cut(s)	63, 183, 284, 391, 582
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	4 cut(s)	192, 241, 342, 715
HpyCH4III	ACNGT	2 cut(s)	517, 845
HpyCH4IV	ACGT	5 cut(s)	187, 196, 264, 279, 387
HpyCH4V	TGCA	8 cut(s)	16, 40, 209, 357, 439, 491, 614, 682
HpyF3I	CTNAG	3 cut(s)	157, 269, 705
HpySE526I	ACGT	5 cut(s)	187, 196, 264, 279, 387
Hsp92I	GRCGYC	2 cut(s)	187, 701
Hsp92II	CATG	2 cut(s)	91, 443
HspAI	GCGC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	76, 101, 272
LguI	GCTCTTC	1 cut(s)	181
LmnI	GCTCC	3 cut(s)	146, 415, 500
Lsp1109I	GCAGC	6 cut(s)	332, 589, 694, 697, 700, 703
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	5 cut(s)	6, 26, 249, 524, 885
MaeII	ACGT	5 cut(s)	187, 196, 264, 279, 387
MaeIII	GTNAC	5 cut(s)	289, 379, 388, 633, 718
MalI	GATC	3 cut(s)	78, 103, 274
MbiI	CCGCTC	1 cut(s)	852
MboI	GATC	3 cut(s)	76, 101, 272
MboII	GAAGA	5 cut(s)	14, 68, 168, 656, 662
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	3 cut(s)	573, 814, 821
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	2 cut(s)	260, 693
MroI	TCCGGA	1 cut(s)	182
MseI	TTAA	2 cut(s)	96, 572
MslI	CAYNNNNRTG	1 cut(s)	677
MspR9I	CCNGG	4 cut(s)	498, 676, 737, 829
MvaI	CCWGG	1 cut(s)	737
MvnI	CGCG	2 cut(s)	342, 893
NciI	CCSGG	3 cut(s)	498, 676, 829
NdeII	GATC	3 cut(s)	76, 101, 272
NlaIII	CATG	2 cut(s)	91, 443
NlaIV	GGNNCC	6 cut(s)	148, 214, 411, 585, 733, 734
NmeAIII	GCCGAG	2 cut(s)	151, 690
NmuCI	GTSAC	3 cut(s)	289, 379, 388
OliI	CACNNNNGTG	1 cut(s)	677
PciSI	GCTCTTC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	189
PinAI	ACCGGT	3 cut(s)	140, 467, 586
PleI	GAGTC	1 cut(s)	754
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	754
Ppu21I	YACGTR	1 cut(s)	197
PsiI	TTATAA	2 cut(s)	245, 362
Psp6I	CCWGG	1 cut(s)	735
PspCI	CACGTG	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	6 cut(s)	148, 214, 411, 585, 733, 734
PspOMI	GGGCCC	1 cut(s)	732
PspPI	GGNCC	3 cut(s)	584, 732, 733
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	189
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	96, 572
Sau3AI	GATC	3 cut(s)	76, 101, 272
Sau96I	GGNCC	3 cut(s)	584, 732, 733
SbfI	CCTGCAGG	1 cut(s)	211
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	4 cut(s)	498, 676, 737, 829
SdaI	CCTGCAGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	2 cut(s)	44, 207
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse8387I	CCTGCAGG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	573, 814, 821
SspMI	CTAG	5 cut(s)	6, 26, 249, 524, 885
StyD4I	CCNGG	4 cut(s)	496, 674, 735, 827
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	2 cut(s)	517, 845
TaiI	ACGT	5 cut(s)	190, 199, 267, 282, 390
TasI	AATT	3 cut(s)	573, 814, 821
TauI	GCSGC	5 cut(s)	345, 351, 369, 410, 855
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	96, 572
Tru9I	TTAA	2 cut(s)	96, 572
TseFI	GTSAC	3 cut(s)	289, 379, 388
TseI	GCWGC	6 cut(s)	345, 602, 682, 685, 688, 691
Tsp45I	GTSAC	3 cut(s)	289, 379, 388
TspDTI	ATGAA	2 cut(s)	818, 824
Tth111I	GACNNNGTC	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	584
XagI	CCTNNNNNAGG	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XspI	CTAG	5 cut(s)	6, 26, 249, 524, 885
ZraI	GACGTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.