Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0020152

Physical Location & Seq

Genomic Coordinates Forward (+)

15890333 .. 15891031

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCAGGCGTCGATCCTGATCCTGATGCACCCACCAACACAAGTCCAGGTGCGCCATCCTCCCCCGCTCGCCGGACTCGAGGCCGTCCTCCCGGCGCAAAGAACAAGCCCAAGCCGCCCCTCATAATCGCACAAGACACCCCAAATGCGCTCACATCTCATGTTCTTGAAGTTTCCTCCGGTTCAGACGTTGTTGAATCGGTGATGACCTACGCCACCCGCCGTGGCCGAGGCGTTTGCGTGCTGAGCGGAAGCGGTGCAGTGGCTAATGTCAACCTGCGCCAGCCAGCCGCAGCAGTACTACCTTTAGGAAGCAGTAGTACTGTGCTGACGATGCACGGTCGTTTTGAAATCCTGTCTCTCACCGGCACGTGCCTGCCTCCACCGGCCCCATCTGGAACCAGTGGCTTGGCTCTATATCTGGCTGGTGGGCAAGGACAGGTTGTTGGAGGGAGTGTTGTAGGACCCTTGAGGGCTTCAGGGCCTGTGACGTTGATTGTGGCTTCTTTTGCTAATGCAGTGTATGATAGGTTGCCGCTGGAGGAGGAGGAGAAGGAGGCTCCACCGCCGCCATTGCAAGCGACGGCTTCGCAATCTTCGGGAGTGACGGGCAGCGGTAGCGGTGGGGATGGGTACAATTTGGGGATGTTGAGAACTTTTCCTGGTGATGTATGTGGTTGGAATAGTGGGAGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

233

Amino Acids

23.25

Weight (kDa)

6.72

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	53 - 171	2e-21	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35390
malus_domestica	MD05G1144000.v1.1 MD10G1143600.v1.1
prunus_persica	Prupe.8G182400_v2.0.a1
pyrus_communis	pycom05g13830 pycom10g12360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AccBSI	CCGCTC	2 cut(s)	68, 249
AclWI	GGATC	2 cut(s)	8, 14
AcoI	YGGCCR	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	462
AcvI	CACGTG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	3 cut(s)	300, 322, 635
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	170, 197, 350
AjnI	CCWGG	2 cut(s)	46, 661
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	8, 14
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	4 cut(s)	82, 226, 387, 482
ApeKI	GCWGC	2 cut(s)	293, 612
AspLEI	GCGC	4 cut(s)	55, 98, 151, 282
AspS9I	GGNCC	3 cut(s)	388, 464, 482
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	214, 355, 677
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
BbrPI	CACGTG	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	305, 624
BccI	CCATC	3 cut(s)	64, 400, 623
BceAI	ACGGC	3 cut(s)	69, 207, 600
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BciT130I	CCWGG	2 cut(s)	48, 663
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	6 cut(s)	116, 291, 294, 536, 569, 613
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	6 cut(s)	117, 292, 295, 537, 570, 614
BmcAI	AGTACT	2 cut(s)	300, 322
Bme1390I	CCNGG	3 cut(s)	48, 93, 663
Bme18I	GGWCC	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	388, 464, 482
BmiI	GGNNCC	4 cut(s)	390, 400, 466, 561
BmrFI	CCNGG	3 cut(s)	48, 93, 663
BmsI	GCATC	2 cut(s)	16, 324
BpmI	CTGGAG	1 cut(s)	560
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	223, 229
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	2 cut(s)	365, 385
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	48, 663
BseDI	CCNNGG	2 cut(s)	223, 229
BseGI	GGATG	3 cut(s)	56, 634, 651
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	3 cut(s)	557, 560, 563
BseXI	GCAGC	2 cut(s)	305, 624
BsgI	GTGCAG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	4 cut(s)	84, 228, 389, 484
BsiEI	CGRYCG	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	5 cut(s)	73, 93, 180, 366, 386
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	4 cut(s)	84, 228, 389, 484
BsoBI	CYCGRG	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	13, 19
Bsp1720I	GCTNAGC	1 cut(s)	245
BspANI	GGCC	4 cut(s)	84, 228, 389, 484
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	4 cut(s)	390, 400, 466, 561
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	8, 14
BsrBI	CCGCTC	2 cut(s)	68, 249
BsrDI	GCAATG	1 cut(s)	572
BsrFI	RCCGGY	2 cut(s)	365, 385
BsrI	ACTGG	1 cut(s)	402
BssAI	RCCGGY	2 cut(s)	365, 385
BssECI	CCNNGG	2 cut(s)	223, 229
BssMI	GATC	2 cut(s)	13, 19
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	48, 663
Bst4CI	ACNGT	2 cut(s)	325, 341
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	6 cut(s)	70, 242, 284, 288, 377, 579
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	56, 634, 651
BstHHI	GCGC	4 cut(s)	55, 98, 151, 282
BstKTI	GATC	2 cut(s)	16, 22
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	13, 19
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 246, 334, 509, 574, 618
BstNI	CCWGG	2 cut(s)	48, 663
BstSCI	CCNGG	3 cut(s)	46, 91, 661
BstV1I	GCAGC	2 cut(s)	305, 624
BstXI	CCANNNNNNTGG	1 cut(s)	409
BsuRI	GGCC	4 cut(s)	84, 228, 389, 484
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	56, 634, 651
BtsI	GCAGTG	2 cut(s)	267, 525
BtsIMutI	CAGTG	3 cut(s)	267, 409, 525
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	6 cut(s)	70, 242, 284, 288, 377, 579
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	4 cut(s)	55, 98, 151, 282
Cfr10I	RCCGGY	2 cut(s)	365, 385
Cfr13I	GGNCC	3 cut(s)	388, 464, 482
Csp6I	GTAC	3 cut(s)	299, 321, 634
CviAII	CATG	1 cut(s)	161
CviQI	GTAC	3 cut(s)	299, 321, 634
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	2 cut(s)	15, 21
DpnII	GATC	2 cut(s)	13, 19
EaeI	YGGCCR	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	462
Eco72I	CACGTG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	78
EcoO109I	RGGNCCY	2 cut(s)	464, 482
EcoRII	CCWGG	2 cut(s)	46, 661
FaeI	CATG	1 cut(s)	164
FaiI	YATR	5 cut(s)	125, 162, 418, 525, 673
FatI	CATG	1 cut(s)	160
FauI	CCCGC	2 cut(s)	73, 227
Fnu4HI	GCNGC	6 cut(s)	116, 291, 294, 536, 569, 613
FokI	GGATG	3 cut(s)	43, 641, 658
Fsp4HI	GCNGC	6 cut(s)	116, 291, 294, 536, 569, 613
GlaI	GCGC	4 cut(s)	54, 97, 150, 281
GluI	GCNGC	6 cut(s)	116, 291, 294, 536, 569, 613
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	4 cut(s)	84, 228, 389, 484
HapII	CCGG	5 cut(s)	73, 93, 180, 366, 386
HhaI	GCGC	4 cut(s)	55, 98, 151, 282
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	4 cut(s)	53, 96, 149, 280
HinP1I	GCGC	4 cut(s)	53, 96, 149, 280
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	76, 197
HpaII	CCGG	5 cut(s)	73, 93, 180, 366, 386
HphI	GGTGA	3 cut(s)	214, 355, 677
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	5 cut(s)	17, 23, 167, 396, 600
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	14, 586
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	2 cut(s)	325, 341
HpyCH4IV	ACGT	3 cut(s)	189, 371, 491
HpyCH4V	TGCA	5 cut(s)	29, 260, 337, 518, 577
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 246, 334, 509, 574, 618
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	3 cut(s)	189, 371, 491
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	4 cut(s)	53, 96, 149, 280
Kzo9I	GATC	2 cut(s)	13, 19
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	2 cut(s)	305, 624
LweI	GCATC	2 cut(s)	16, 324
MaeII	ACGT	3 cut(s)	189, 371, 491
MaeIII	GTNAC	2 cut(s)	487, 604
MalI	GATC	2 cut(s)	15, 21
MbiI	CCGCTC	2 cut(s)	68, 249
MboI	GATC	2 cut(s)	13, 19
MboII	GAAGA	1 cut(s)	588
MluCI	AATT	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	427, 659
MspA1I	CMGCKG	2 cut(s)	538, 615
MspI	CCGG	5 cut(s)	73, 93, 180, 366, 386
MspR9I	CCNGG	3 cut(s)	48, 93, 663
MvaI	CCWGG	2 cut(s)	48, 663
MwoI	GCNNNNNNNGC	6 cut(s)	115, 246, 334, 509, 574, 618
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	13, 19
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	4 cut(s)	390, 400, 466, 561
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	2 cut(s)	487, 604
PaeR7I	CTCGAG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	6 cut(s)	117, 292, 295, 537, 570, 614
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	46, 661
PspCI	CACGTG	1 cut(s)	372
PspGI	CCWGG	2 cut(s)	46, 661
PspN4I	GGNNCC	4 cut(s)	390, 400, 466, 561
PspPI	GGNCC	3 cut(s)	388, 464, 482
PspPPI	RGGWCCY	1 cut(s)	464
PspXI	VCTCGAGB	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	485
RsaI	GTAC	3 cut(s)	300, 322, 635
RsaNI	GTAC	3 cut(s)	299, 321, 634
SatI	GCNGC	6 cut(s)	116, 291, 294, 536, 569, 613
Sau3AI	GATC	2 cut(s)	13, 19
Sau96I	GGNCC	3 cut(s)	388, 464, 482
ScaI	AGTACT	2 cut(s)	300, 322
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	48, 93, 663
SetI	ASST	9 cut(s)	52, 192, 212, 279, 307, 374, 444, 494, 533
SfaNI	GCATC	2 cut(s)	16, 324
Sfr274I	CTCGAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	464
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	78, 469
SmoI	CTYRAG	2 cut(s)	78, 469
Sse9I	AATT	1 cut(s)	637
StyD4I	CCNGG	3 cut(s)	46, 91, 661
TaaI	ACNGT	2 cut(s)	325, 341
TaiI	ACGT	3 cut(s)	192, 374, 494
TaqI	TCGA	2 cut(s)	12, 79
TasI	AATT	1 cut(s)	637
TatI	WGTACW	2 cut(s)	298, 320
TauI	GCSGC	4 cut(s)	118, 293, 538, 571
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	3 cut(s)	267, 409, 525
TseFI	GTSAC	2 cut(s)	487, 604
TseI	GCWGC	2 cut(s)	293, 612
Tsp45I	GTSAC	2 cut(s)	487, 604
TspRI	CASTG	3 cut(s)	267, 409, 525
VpaK11BI	GGWCC	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	78
ZrmI	AGTACT	2 cut(s)	300, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.