Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0020152

Physical Location & Seq

Genomic Coordinates Forward (+)

17392280 .. 17392837

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCATCAGGCGGCGATCCTGATCCTGATGCACCAACCAACACAATTCCAGGTGCGTCATCCTCCGCCGCTAGCCGGCCTCGAGGCCGTCCTCGCGGAGCAAAGAGCAAGCCCAAGCCACCCATCATAATCACACAAGATACCCCAAACACGCTCACATCTCATATTTTTGAAGTTTCCTCCGGTTCAGACATTGTTGACTCGGTGAAGACCTACACCACCCGCCGTGGCCGAGGCATTTGCGTGCTGAGCGGCAGCGGTGCAGTAACTAATGTCAACCTGCGCCAGCCAGCCACAGCAGTACTATCCGTCGGAAGTAGTAGTCCTGTCGTGTCGATGCACGGTCGGTTTGAAATTCTATCTCTCACCGGCACGTGCCTGCCTCCACCGGCCCCACCTGAAGCCAGTGGCTTGGCCTTATTTTTGGCTGGTGGGCAAGGACAGATTGTTGGAGGGAGTGTCGTGGGGCCCTTGAGGGCTTCAGGGCCTGTAATCTTGATTGTGGTTTCTTTTGCTAATGCAGCGTGTGATAGGTTGCCGCTGGAGGAGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

186

Amino Acids

18.74

Weight (kDa)

7.75

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	54 - 172	2.7e-19	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35390
malus_domestica	MD05G1144000.v1.1 MD10G1143600.v1.1
prunus_persica	Prupe.8G182400_v2.0.a1
pyrus_communis	pycom05g13830 pycom10g12360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	96
AciI	CCGC	8 cut(s)	12, 66, 69, 96, 223, 252, 258, 539
AclWI	GGATC	2 cut(s)	11, 17
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	2 cut(s)	420, 465
AcvI	CACGTG	1 cut(s)	375
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	173, 353
AjnI	CCWGG	1 cut(s)	49
AlwI	GGATC	2 cut(s)	11, 17
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	7 cut(s)	77, 85, 229, 390, 414, 467, 485
ApaI	GGGCCC	1 cut(s)	471
ApeKI	GCWGC	2 cut(s)	255, 521
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	4 cut(s)	391, 467, 468, 485
AsuHPI	GGTGA	2 cut(s)	217, 358
AsuNHI	GCTAGC	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	471
BbrPI	CACGTG	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	267, 533
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	2 cut(s)	72, 210
BcgI	CGANNNNNNTGC	2 cut(s)	222, 256
BciT130I	CCWGG	1 cut(s)	51
BfaI	CTAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	288
BisI	GCNGC	6 cut(s)	13, 69, 253, 256, 522, 539
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	6 cut(s)	14, 70, 254, 257, 523, 540
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	4 cut(s)	391, 467, 468, 485
BmiI	GGNNCC	3 cut(s)	393, 468, 469
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	19, 327
BmtI	GCTAGC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	226, 232
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	3 cut(s)	444, 474, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	3 cut(s)	75, 368, 388
Bse1I	ACTGG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	226, 232
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	267, 533
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	7 cut(s)	79, 87, 231, 392, 416, 469, 487
BsiEI	CGRYCG	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	4 cut(s)	76, 183, 369, 389
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	7 cut(s)	79, 87, 231, 392, 416, 469, 487
BsoBI	CYCGRG	1 cut(s)	81
Bsp120I	GGGCCC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	16, 22
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	8 cut(s)	12, 66, 69, 96, 223, 252, 258, 539
BspANI	GGCC	7 cut(s)	79, 87, 231, 392, 416, 469, 487
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	393, 468, 469
BspMI	ACCTGC	1 cut(s)	288
BspOI	GCTAGC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	11, 17
BsrBI	CCGCTC	1 cut(s)	252
BsrFI	RCCGGY	3 cut(s)	75, 368, 388
BsrI	ACTGG	1 cut(s)	405
BssAI	RCCGGY	3 cut(s)	75, 368, 388
BssECI	CCNNGG	2 cut(s)	226, 232
BssMI	GATC	2 cut(s)	16, 22
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	375
BstC8I	GCNNGC	7 cut(s)	73, 77, 110, 245, 287, 291, 380
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	19, 25
BstMBI	GATC	2 cut(s)	16, 22
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 249, 521
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	267, 533
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuRI	GGCC	7 cut(s)	79, 87, 231, 392, 416, 469, 487
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	7 cut(s)	73, 77, 110, 245, 287, 291, 380
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	3 cut(s)	75, 368, 388
Cfr13I	GGNCC	4 cut(s)	391, 467, 468, 485
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	302
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	2 cut(s)	18, 24
DpnII	GATC	2 cut(s)	16, 22
EaeI	YGGCCR	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	471
Eco57I	CTGAAG	2 cut(s)	420, 465
Eco72I	CACGTG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	81
EcoO109I	RGGNCCY	3 cut(s)	467, 468, 485
EcoRII	CCWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	471
FaiI	YATR	2 cut(s)	128, 165
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	6 cut(s)	13, 69, 253, 256, 522, 539
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	6 cut(s)	13, 69, 253, 256, 522, 539
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	6 cut(s)	13, 69, 253, 256, 522, 539
HaeIII	GGCC	7 cut(s)	79, 87, 231, 392, 416, 469, 487
HapII	CCGG	4 cut(s)	76, 183, 369, 389
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	2 cut(s)	199, 277
HindII	GTYRAC	2 cut(s)	199, 277
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	4 cut(s)	76, 183, 369, 389
HphI	GGTGA	2 cut(s)	217, 358
Hpy166II	GTNNAC	2 cut(s)	199, 277
Hpy188I	TCNGA	2 cut(s)	190, 314
Hpy188III	TCNNGA	3 cut(s)	20, 26, 496
Hpy8I	GTNNAC	2 cut(s)	199, 277
Hpy99I	CGWCG	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	4 cut(s)	32, 263, 340, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 249, 521
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	374
HspAI	GCGC	1 cut(s)	283
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	16, 22
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	267, 533
LweI	GCATC	2 cut(s)	19, 327
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	18, 24
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	2 cut(s)	16, 22
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	2 cut(s)	45, 354
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	292, 430
MroNI	GCCGGC	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	258, 541
MspI	CCGG	4 cut(s)	76, 183, 369, 389
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	93, 249, 521
NaeI	GCCGGC	1 cut(s)	77
NdeII	GATC	2 cut(s)	16, 22
NgoMIV	GCCGGC	1 cut(s)	75
NheI	GCTAGC	1 cut(s)	71
NlaIV	GGNNCC	3 cut(s)	393, 468, 469
NmeAIII	GCCGAG	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	77
PkrI	GCNGC	6 cut(s)	14, 70, 254, 257, 523, 540
PleI	GAGTC	1 cut(s)	194
PmaCI	CACGTG	1 cut(s)	375
PmlI	CACGTG	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	393, 468, 469
PspOMI	GGGCCC	1 cut(s)	467
PspPI	GGNCC	4 cut(s)	391, 467, 468, 485
PspXI	VCTCGAGB	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	242
SatI	GCNGC	6 cut(s)	13, 69, 253, 256, 522, 539
Sau3AI	GATC	2 cut(s)	16, 22
Sau96I	GGNCC	4 cut(s)	391, 467, 468, 485
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	6 cut(s)	55, 215, 282, 377, 400, 536
SfaNI	GCATC	2 cut(s)	19, 327
Sfr274I	CTCGAG	1 cut(s)	81
SlaI	CTCGAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	81, 472
SmoI	CTYRAG	2 cut(s)	81, 472
Sse9I	AATT	2 cut(s)	45, 354
SsiI	CCGC	8 cut(s)	12, 66, 69, 96, 223, 252, 258, 539
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	82, 335
TasI	AATT	2 cut(s)	45, 354
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	4 cut(s)	15, 71, 255, 541
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	2 cut(s)	255, 521
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	81
XspI	CTAG	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.