Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016122

Physical Location & Seq

Genomic Coordinates Forward (+)

17343374 .. 17345171

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTTCAGTGACTCTAGGTTCATGGATTGTTGTTCACCACCACAATCATCATCATCCATCTTCAATCCTTACCAAATCCAGATCCAGATCTTGTCCTATAACTCTTACTAAACCCATCTCCTTTCGATCAAAACGCACCGTTTCATCATCTTCTTCAATCGTTTCTTCTTCCGTTGTTACAAAAGAAGACAATCTACGCCAATCTGAACCATCCTCTTTCGATTTCATGTCGTACATCATCACCAAAGCCGAATTAGTCAACAAAGCTTTAGATTCAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAAGCGATGCGTTACTCTCTTCTCGCCGGTGGCAAAAGAGTTAGACCAGTTCTCTGCATCGCTGCTTGTGAACTCGTCGGAGGTGAAGAATCAACCGCTATGCCAGCAGCTTGCGCCGTCGAGATGATTCACACCATGTCGTTGATCCACGACGATCTCCCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGACCAACCACAAAGTGTTTGGTGAAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTTTCGCTTTCGAGCATTTAGCTTCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGGTTCGAGCCGTTGGAGAATTGGCTAAAGCGATAGGAACAGAAGGGTTAGTGGCGGGTCAAGTCGTGGATATTAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATTTGGAGTTTATCCATTTGCATAAAACGGCGGCGTTGCTTGAAGCTTCTGCTGTTTTGGGAGCTATTGTTGGTGGAGGAAGTGATGATGAGATTGAGAGGTTAAGAAAGTTTGCGAGATGTATTGGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGAAAACTGCTGGGAAAGATTTGATTGCTGATAAGTTGACGTATCCTAAGATTATGGGTTTGGAGAAATCGAGAGAGTTTGCTGAGAAATTGAATAGAGAGGCTCGTGATCAGCTTTTAGGGTTTGATTCTGATAAGGTTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

371

Amino Acids

40.17

Weight (kDa)

6.17

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	103 - 340	6.4e-60	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36810
fragaria_vesca	FvH4_1g14070
malus_domestica	MD02G1154400.v1.1
prunus_persica	Prupe.7G148600_v2.0.a1
pyrus_communis	pycom02g12210
rosa_chinensis	RchiOBHm_Chr2g0102671
rosa_laevigata	RLG00000017165
rosa_multiflora	Rmu_sc0008034.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140400
rosa_rugosa	Rorug02G0108600
rosa_samantha	Rh2AG157400 Rh2BG163700 Rh2CG162900 Rh2DG162600
rosa_wichuraiana	Rw2G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	913
AatII	GACGTC	2 cut(s)	540, 732
AccII	CGCG	1 cut(s)	560
AciI	CCGC	4 cut(s)	408, 496, 683, 773
AclWI	GGATC	3 cut(s)	78, 301, 451
AcyI	GRCGYC	2 cut(s)	537, 729
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	66, 159, 785, 1021
AluBI	AGCT	7 cut(s)	269, 281, 422, 590, 788, 806, 1042
AluI	AGCT	7 cut(s)	269, 281, 422, 590, 788, 806, 1042
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	3 cut(s)	78, 301, 451
ApeKI	GCWGC	2 cut(s)	374, 419
AspLEI	GCGC	2 cut(s)	428, 562
AsuHPI	GGTGA	5 cut(s)	29, 235, 407, 542, 634
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BauI	CACGAG	1 cut(s)	1032
BbsI	GAAGAC	2 cut(s)	195, 540
BbvI	GCAGC	2 cut(s)	361, 431
BccI	CCATC	3 cut(s)	67, 125, 220
BceAI	ACGGC	4 cut(s)	413, 483, 623, 786
BciVI	GTATCC	1 cut(s)	981
BclI	TGATCA	1 cut(s)	1036
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	1102
BfuI	GTATCC	1 cut(s)	981
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	3 cut(s)	375, 420, 774
BlsI	GCNGC	3 cut(s)	376, 421, 775
BmsI	GCATC	2 cut(s)	309, 378
BpiI	GAAGAC	2 cut(s)	195, 540
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	88
BsaHI	GRCGYC	2 cut(s)	537, 729
BsaJI	CCNNGG	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	1095
Bse8I	GATNNNNATC	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	3 cut(s)	55, 212, 907
BseJI	GATNNNNATC	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	1 cut(s)	1002
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	361, 431
BseYI	CCCAGC	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	339, 552, 620
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	549
BsmBI	CGTCTC	1 cut(s)	549
Bsp143I	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
BspACI	CCGC	4 cut(s)	408, 496, 683, 773
BspCNI	CTCAG	1 cut(s)	1003
BspFNI	CGCG	1 cut(s)	560
BspPI	GGATC	3 cut(s)	78, 301, 451
BsrDI	GCAATG	1 cut(s)	1095
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
BssNI	GRCGYC	2 cut(s)	537, 729
BssSI	CACGAG	1 cut(s)	1032
Bst2BI	CACGAG	1 cut(s)	1032
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	2 cut(s)	537, 729
BstC8I	GCNNGC	2 cut(s)	417, 424
BstDEI	CTNAG	2 cut(s)	975, 1011
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	3 cut(s)	55, 212, 907
BstFNI	CGCG	1 cut(s)	560
BstHHI	GCGC	2 cut(s)	428, 562
BstKTI	GATC	8 cut(s)	86, 92, 131, 309, 459, 469, 493, 1039
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
BstMWI	GCNNNNNNNGC	4 cut(s)	416, 425, 548, 557
BstSFI	CTRYAG	1 cut(s)	1102
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	361, 431
BstV2I	GAAGAC	2 cut(s)	195, 540
BstX2I	RGATCY	3 cut(s)	83, 89, 306
BstYI	RGATCY	3 cut(s)	83, 89, 306
BsuI	GTATCC	1 cut(s)	981
BtgI	CCRYGG	1 cut(s)	499
BtgZI	GCGATG	2 cut(s)	332, 355
BtsCI	GGATG	3 cut(s)	55, 212, 907
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	417, 424
CfoI	GCGC	2 cut(s)	428, 562
Cfr10I	RCCGGY	1 cut(s)	338
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	3 cut(s)	24, 229, 448
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	975, 1011
DpnI	GATC	8 cut(s)	85, 91, 130, 308, 458, 468, 492, 1038
DpnII	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
DraI	TTTAAA	1 cut(s)	723
DraIII	CACNNNGTG	1 cut(s)	523
DrdI	GACNNNNNNGTC	1 cut(s)	913
DseDI	GACNNNNNNGTC	1 cut(s)	913
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	485
Eco32I	GATATC	1 cut(s)	895
EcoRV	GATATC	1 cut(s)	895
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	3 cut(s)	27, 232, 451
FaiI	YATR	9 cut(s)	25, 101, 230, 413, 449, 479, 765, 983, 1104
FatI	CATG	3 cut(s)	23, 228, 447
FauI	CCCGC	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	1036
Fnu4HI	GCNGC	3 cut(s)	375, 420, 774
FokI	GGATG	3 cut(s)	42, 199, 914
Fsp4HI	GCNGC	3 cut(s)	375, 420, 774
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	2 cut(s)	427, 561
GluI	GCNGC	3 cut(s)	375, 420, 774
GsaI	CCCAGC	1 cut(s)	942
HapII	CCGG	3 cut(s)	339, 552, 620
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	2 cut(s)	428, 562
Hin1I	GRCGYC	2 cut(s)	537, 729
Hin1II	CATG	3 cut(s)	27, 232, 451
Hin6I	GCGC	2 cut(s)	426, 560
HinP1I	GCGC	2 cut(s)	426, 560
HincII	GTYRAC	2 cut(s)	262, 966
HindII	GTYRAC	2 cut(s)	262, 966
HindIII	AAGCTT	2 cut(s)	267, 786
HinfI	GANTC	5 cut(s)	13, 275, 401, 439, 1055
HpaII	CCGG	3 cut(s)	339, 552, 620
HphI	GGTGA	5 cut(s)	29, 235, 407, 542, 634
Hpy166II	GTNNAC	4 cut(s)	37, 262, 383, 966
Hpy188I	TCNGA	4 cut(s)	208, 392, 607, 1060
Hpy188III	TCNNGA	6 cut(s)	81, 87, 304, 433, 999, 1034
Hpy8I	GTNNAC	4 cut(s)	37, 262, 383, 966
Hpy99I	CGWCG	9 cut(s)	392, 434, 467, 491, 542, 601, 731, 734, 919
HpyAV	CCTTC	2 cut(s)	665, 704
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	3 cut(s)	537, 729, 968
HpyCH4V	TGCA	2 cut(s)	369, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	416, 425, 548, 557
HpyF3I	CTNAG	2 cut(s)	975, 1011
HpySE526I	ACGT	3 cut(s)	537, 729, 968
Hsp92I	GRCGYC	2 cut(s)	537, 729
Hsp92II	CATG	3 cut(s)	27, 232, 451
HspAI	GCGC	2 cut(s)	426, 560
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
LmnI	GCTCC	2 cut(s)	803, 1075
LpnPI	CCDG	9 cut(s)	94, 100, 352, 372, 429, 565, 633, 866, 924
Lsp1109I	GCAGC	2 cut(s)	361, 431
LweI	GCATC	2 cut(s)	309, 378
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	3 cut(s)	537, 729, 968
MaeIII	GTNAC	4 cut(s)	10, 178, 323, 904
MalI	GATC	8 cut(s)	85, 91, 130, 308, 458, 468, 492, 1038
MboI	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
MboII	GAAGA	9 cut(s)	54, 144, 147, 159, 162, 200, 323, 410, 545
MflI	RGATCY	3 cut(s)	83, 89, 306
MluCI	AATT	4 cut(s)	254, 647, 1016, 1090
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	2 cut(s)	370, 622
MnlI	CCTC	6 cut(s)	226, 297, 386, 812, 834, 1021
MseI	TTAA	2 cut(s)	722, 845
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	3 cut(s)	339, 552, 620
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	416, 425, 548, 557
NdeII	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
NlaIII	CATG	3 cut(s)	27, 232, 451
NmuCI	GTSAC	2 cut(s)	10, 904
PcsI	WCGNNNNNNNCGW	1 cut(s)	914
PfeI	GAWTC	4 cut(s)	275, 401, 439, 1055
PkrI	GCNGC	3 cut(s)	376, 421, 775
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PspFI	CCCAGC	1 cut(s)	938
PsuI	RGATCY	3 cut(s)	83, 89, 306
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	722, 845
SatI	GCNGC	3 cut(s)	375, 420, 774
Sau3AI	GATC	8 cut(s)	83, 89, 128, 306, 456, 466, 490, 1036
SchI	GAGTC	1 cut(s)	7
SfaNI	GCATC	2 cut(s)	309, 378
SfcI	CTRYAG	1 cut(s)	1102
SgrAI	CRCCGGYG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	4 cut(s)	254, 647, 1016, 1090
SsiI	CCGC	4 cut(s)	408, 496, 683, 773
SspMI	CTAG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	3 cut(s)	540, 732, 971
TaqI	TCGA	7 cut(s)	127, 222, 432, 579, 634, 917, 998
TasI	AATT	4 cut(s)	254, 647, 1016, 1090
TauI	GCSGC	1 cut(s)	776
TfiI	GAWTC	4 cut(s)	275, 401, 439, 1055
Tru1I	TTAA	2 cut(s)	722, 845
Tru9I	TTAA	2 cut(s)	722, 845
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	2 cut(s)	10, 904
TseI	GCWGC	2 cut(s)	374, 419
Tsp45I	GTSAC	2 cut(s)	10, 904
TspDTI	ATGAA	3 cut(s)	12, 135, 217
TspGWI	ACGGA	2 cut(s)	163, 281
TspRI	CASTG	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XspI	CTAG	1 cut(s)	17
ZraI	GACGTC	2 cut(s)	538, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.