Rmu_sc0008034.1_g000005

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008034.1
Physical Location & Seq
Forward (+)
13383 .. 14477
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008034.1_g000005.1.cds

Sequence Viewer

Length: 1095 bp
atgagctgtgtgaatctgagctcatggggccaaacctgttcaatgttgaaccgatccagatccccatctctccacctcctccacagcctcaggacccgacccgtttccttcgcttctccgaaaggacgccgacccagttccgtcacggcaatcctgaccaagcaggagaatgtgaaggagcagaaggaagaggaatccgggaagcccagcttcaatttcaagacctacatggtggagaaggccgagtccgtcaaccgggccttagacgccgccgtttcgctgaaacacccgattacgatccacgaagcgatgcggtactctttgctcgccggaggcaaacgggtccgaccagttctgtgtgtcgcggcctgcgagctcgtcggagggtctgagtccctcgccatgccggcggcctgcgccgtcgagatgatccacaccatgtcgttgatccacgacgacttgccgtgcatggataacgacgacctccgccgcgggaagcccaccaaccacaaggttttcggcgaagacgtcgccgttttggccggcgacgcgcttctctccttcgcgttcgagcacctcgccgtctccaccgtcggcgtggagccttctagaatcgtccgagccgtggaggagcttgcccggtcaatcgggtcggagggattggtggcgggtcaagtcgtggatatccactcggaggggttatccgatgtgggactggagcacctggagtacatacacctccacaaaactgcggctcttcttgaatgtgcagttgttctcgggtcgattttgggaggcgggtcggactcggaaatcgaaaagctccggacttttgcgaggtacattgggctgttgtttcaagttgtggatgacattctggatgtgacgaagtcttcacaggaattggggaagactgctgggaaggacttggtggctgataaggtgacttatcctaagctaatggggattgagaaatcgaaggaatttgcggagaaacttaatagggatgcacaagaacagcttgtcggattcgaccaggaaaaggctgctcctttgattgctttggctaattacattgcttacaggcaaaattga

Protein Analysis

364

Amino Acids

39.59

Weight (kDa)

6.08

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36810
fragaria_vesca FvH4_1g14070
malus_domestica MD02G1154400.v1.1
prunus_persica Prupe.7G148600_v2.0.a1
pyrus_communis pycom02g12210
rosa_chinensis RchiOBHm_Chr2g0102671
rosa_laevigata RLG00000017165
rosa_multiflora Rmu_sc0008034.1_g000005
rosa_roxburghii Rroxscaffold_2G00140400
rosa_rugosa Rorug02G0108600
rosa_samantha Rh2AG157400 Rh2BG163700 Rh2CG162900 Rh2DG162600
rosa_wichuraiana Rw2G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 531
AccII CGCG 4 cut(s) 365, 492, 551, 566
AccIII TCCGGA 1 cut(s) 825
AclWI GGATC 5 cut(s) 48, 54, 292, 424, 442
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 983
AcyI GRCGYC 3 cut(s) 127, 267, 528
AfaI GTAC 3 cut(s) 317, 731, 842
AfiI CCNNNNNNNGG 4 cut(s) 255, 625, 694, 1042
AgsI TTSAA 6 cut(s) 42, 49, 214, 220, 764, 860
AjnI CCWGG 2 cut(s) 723, 1035
AluBI AGCT 8 cut(s) 6, 21, 210, 376, 634, 823, 958, 1021
AluI AGCT 8 cut(s) 6, 21, 210, 376, 634, 823, 958, 1021
Alw21I GWGCWC 4 cut(s) 23, 378, 576, 723
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 5 cut(s) 48, 54, 292, 424, 442
Ama87I CYCGRG 1 cut(s) 779
Aor13HI TCCGGA 1 cut(s) 825
AoxI GGCC 6 cut(s) 28, 240, 258, 366, 411, 540
ApeKI GCWGC 1 cut(s) 1046
ApoI RAATTY 1 cut(s) 983
AspLEI GCGC 2 cut(s) 419, 553
AspS9I GGNCC 4 cut(s) 28, 93, 258, 343
AsuC2I CCSGG 3 cut(s) 199, 257, 640
AsuHPI GGTGA 1 cut(s) 955
AvaI CYCGRG 1 cut(s) 779
AvaII GGWCC 2 cut(s) 93, 343
AxyI CCTNAGG 1 cut(s) 89
BanII GRGCYC 2 cut(s) 23, 378
BbsI GAAGAC 3 cut(s) 531, 885, 917
Bbv12I GWGCWC 4 cut(s) 23, 378, 576, 723
BbvI GCAGC 1 cut(s) 1033
BccI CCATC 1 cut(s) 73
BceAI ACGGC 7 cut(s) 162, 257, 404, 448, 518, 566, 608
BciT130I CCWGG 2 cut(s) 725, 1037
BcnI CCSGG 3 cut(s) 199, 257, 640
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 1 cut(s) 609
BglI GCCNNNNNGGC 2 cut(s) 407, 539
BisI GCNGC 6 cut(s) 270, 366, 411, 490, 753, 1047
BlsI GCNGC 6 cut(s) 271, 367, 412, 491, 754, 1048
Bme1390I CCNGG 5 cut(s) 199, 257, 640, 725, 1037
Bme18I GGWCC 2 cut(s) 93, 343
BmeT110I CYCGRG 1 cut(s) 779
BmgT120I GGNCC 4 cut(s) 28, 93, 258, 343
BmiI GGNNCC 4 cut(s) 29, 95, 344, 603
BmrFI CCNGG 5 cut(s) 199, 257, 640, 725, 1037
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 300, 997
BmuI ACTGGG 1 cut(s) 129
BpiI GAAGAC 3 cut(s) 531, 885, 917
BpmI CTGGAG 2 cut(s) 737, 746
Bpu10I CCTNAGC 1 cut(s) 954
BpuMI CCSGG 3 cut(s) 199, 257, 640
BsaBI GATNNNNATC 3 cut(s) 58, 64, 296
BsaHI GRCGYC 3 cut(s) 127, 267, 528
BsaJI CCNNGG 2 cut(s) 490, 624
BsaWI WCCGGW 1 cut(s) 825
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 625, 694, 1042
Bse118I RCCGGY 2 cut(s) 406, 542
Bse1I ACTGG 3 cut(s) 135, 350, 720
Bse21I CCTNAGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 1074
Bse8I GATNNNNATC 3 cut(s) 58, 64, 296
BseAI TCCGGA 1 cut(s) 825
BseBI CCWGG 2 cut(s) 725, 1037
BseDI CCNNGG 2 cut(s) 490, 624
BseGI GGATG 3 cut(s) 874, 886, 1012
BseJI GATNNNNATC 3 cut(s) 58, 64, 296
BseLI CCNNNNNNNGG 4 cut(s) 255, 625, 694, 1042
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 3 cut(s) 8, 103, 381
BseNI ACTGG 3 cut(s) 135, 350, 720
BseRI GAGGAG 2 cut(s) 68, 644
BseXI GCAGC 1 cut(s) 1033
BseYI CCCAGC 2 cut(s) 206, 917
BsgI GTGCAG 1 cut(s) 789
Bsh1236I CGCG 4 cut(s) 365, 492, 551, 566
BshFI GGCC 6 cut(s) 30, 242, 260, 368, 413, 542
BsiHKAI GWGCWC 4 cut(s) 23, 378, 576, 723
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 7 cut(s) 198, 256, 330, 407, 543, 640, 826
BslFI GGGAC 2 cut(s) 379, 726
BslI CCNNNNNNNGG 4 cut(s) 255, 625, 694, 1042
BsmAI GTCTC 1 cut(s) 589
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 2 cut(s) 379, 726
BsnI GGCC 6 cut(s) 30, 242, 260, 368, 413, 542
BsoBI CYCGRG 1 cut(s) 779
Bsp1286I GDGCHC 4 cut(s) 23, 378, 576, 723
Bsp13I TCCGGA 1 cut(s) 825
Bsp143I GATC 5 cut(s) 53, 59, 297, 429, 447
BspANI GGCC 6 cut(s) 30, 242, 260, 368, 413, 542
BspCNI CTCAG 3 cut(s) 9, 102, 382
BspEI TCCGGA 1 cut(s) 825
BspFNI CGCG 4 cut(s) 365, 492, 551, 566
BspLI GGNNCC 4 cut(s) 29, 95, 344, 603
BspPI GGATC 5 cut(s) 48, 54, 292, 424, 442
BspQI GCTCTTC 1 cut(s) 762
BsrDI GCAATG 1 cut(s) 1074
BsrFI RCCGGY 2 cut(s) 406, 542
BsrI ACTGG 3 cut(s) 135, 350, 720
BssAI RCCGGY 2 cut(s) 406, 542
BssECI CCNNGG 2 cut(s) 490, 624
BssMI GATC 5 cut(s) 53, 59, 297, 429, 447
BssNI GRCGYC 3 cut(s) 127, 267, 528
Bst2UI CCWGG 2 cut(s) 725, 1037
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 2 cut(s) 183, 762
BstACI GRCGYC 3 cut(s) 127, 267, 528
BstC8I GCNNGC 7 cut(s) 327, 370, 374, 408, 415, 544, 636
BstDEI CTNAG 5 cut(s) 17, 89, 262, 390, 954
BstDSI CCRYGG 2 cut(s) 490, 624
BstF5I GGATG 3 cut(s) 874, 886, 1012
BstFNI CGCG 4 cut(s) 365, 492, 551, 566
BstHHI GCGC 2 cut(s) 419, 553
BstKTI GATC 5 cut(s) 56, 62, 300, 432, 450
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 5 cut(s) 53, 59, 297, 429, 447
BstMWI GCNNNNNNNGC 6 cut(s) 27, 266, 407, 416, 539, 548
BstNI CCWGG 2 cut(s) 725, 1037
BstSCI CCNGG 5 cut(s) 197, 255, 638, 723, 1035
BstUI CGCG 4 cut(s) 365, 492, 551, 566
BstV1I GCAGC 1 cut(s) 1033
BstV2I GAAGAC 3 cut(s) 531, 885, 917
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 6 cut(s) 30, 242, 260, 368, 413, 542
BtgI CCRYGG 2 cut(s) 490, 624
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 3 cut(s) 874, 886, 1012
Cac8I GCNNGC 7 cut(s) 327, 370, 374, 408, 415, 544, 636
CfoI GCGC 2 cut(s) 419, 553
Cfr10I RCCGGY 2 cut(s) 406, 542
Cfr13I GGNCC 4 cut(s) 28, 93, 258, 343
Cfr42I CCGCGG 1 cut(s) 493
CseI GACGC 3 cut(s) 135, 275, 557
Csp6I GTAC 3 cut(s) 316, 730, 841
CviAII CATG 5 cut(s) 24, 229, 403, 439, 469
CviQI GTAC 3 cut(s) 316, 730, 841
DdeI CTNAG 5 cut(s) 17, 89, 262, 390, 954
DpnI GATC 5 cut(s) 55, 61, 299, 431, 449
DpnII GATC 5 cut(s) 53, 59, 297, 429, 447
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 2 cut(s) 183, 762
EarI CTCTTC 2 cut(s) 183, 762
EciI GGCGGA 1 cut(s) 476
Ecl136II GAGCTC 2 cut(s) 21, 376
Eco24I GRGCYC 2 cut(s) 23, 378
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 2 cut(s) 93, 343
Eco53kI GAGCTC 2 cut(s) 21, 376
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 779
EcoICRI GAGCTC 2 cut(s) 21, 376
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 723, 1035
EcoRV GATATC 1 cut(s) 685
EcoT38I GRGCYC 2 cut(s) 23, 378
Esp3I CGTCTC 1 cut(s) 589
FaeI CATG 5 cut(s) 27, 232, 406, 442, 472
FaiI YATR 6 cut(s) 25, 230, 404, 440, 470, 734
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 1005, 1037
FaqI GGGAC 2 cut(s) 379, 726
FatI CATG 5 cut(s) 23, 228, 402, 438, 468
FauI CCCGC 3 cut(s) 485, 661, 791
Fnu4HI GCNGC 6 cut(s) 270, 366, 411, 490, 753, 1047
FokI GGATG 3 cut(s) 881, 893, 1019
FriOI GRGCYC 2 cut(s) 23, 378
Fsp4HI GCNGC 6 cut(s) 270, 366, 411, 490, 753, 1047
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 418, 552
GluI GCNGC 6 cut(s) 270, 366, 411, 490, 753, 1047
GsaI CCCAGC 2 cut(s) 210, 921
GsuI CTGGAG 2 cut(s) 737, 746
HaeIII GGCC 6 cut(s) 30, 242, 260, 368, 413, 542
HapII CCGG 7 cut(s) 198, 256, 330, 407, 543, 640, 826
HgaI GACGC 3 cut(s) 135, 275, 557
HhaI GCGC 2 cut(s) 419, 553
Hin1I GRCGYC 3 cut(s) 127, 267, 528
Hin1II CATG 5 cut(s) 27, 232, 406, 442, 472
Hin6I GCGC 2 cut(s) 417, 551
HinP1I GCGC 2 cut(s) 417, 551
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 7 cut(s) 13, 194, 245, 392, 612, 806, 1029
HpaII CCGG 7 cut(s) 198, 256, 330, 407, 543, 640, 826
HphI GGTGA 1 cut(s) 955
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 9 cut(s) 57, 91, 154, 220, 424, 609, 761, 826, 878
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 7 cut(s) 383, 425, 458, 482, 533, 551, 596
HpyAV CCTTC 8 cut(s) 118, 169, 178, 232, 571, 615, 916, 973
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 468, 770, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 266, 407, 416, 539, 548
HpyF3I CTNAG 5 cut(s) 17, 89, 262, 390, 954
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 3 cut(s) 127, 267, 528
Hsp92II CATG 5 cut(s) 27, 232, 406, 442, 472
HspAI GCGC 2 cut(s) 417, 551
Kpn2I TCCGGA 1 cut(s) 825
KroI GCCGGC 2 cut(s) 406, 542
KroNI GCCGGC 2 cut(s) 408, 544
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 5 cut(s) 53, 59, 297, 429, 447
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 6 cut(s) 178, 601, 631, 718, 828, 1054
Lsp1109I GCAGC 1 cut(s) 1033
LweI GCATC 2 cut(s) 300, 997
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 142, 883, 943
MalI GATC 5 cut(s) 55, 61, 299, 431, 449
MboI GATC 5 cut(s) 53, 59, 297, 429, 447
MboII GAAGA 5 cut(s) 200, 536, 749, 885, 922
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 4 cut(s) 23, 378, 576, 723
MluCI AATT 5 cut(s) 214, 902, 983, 1069, 1090
MlyI GAGTC 3 cut(s) 254, 401, 800
MmeI TCCRAC 5 cut(s) 361, 370, 633, 783, 1006
MroI TCCGGA 1 cut(s) 825
MroNI GCCGGC 2 cut(s) 406, 542
MseI TTAA 1 cut(s) 999
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 7 cut(s) 198, 256, 330, 407, 543, 640, 826
MspR9I CCNGG 5 cut(s) 199, 257, 640, 725, 1037
MvaI CCWGG 2 cut(s) 725, 1037
MvnI CGCG 4 cut(s) 365, 492, 551, 566
MwoI GCNNNNNNNGC 6 cut(s) 27, 266, 407, 416, 539, 548
NaeI GCCGGC 2 cut(s) 408, 544
NciI CCSGG 3 cut(s) 199, 257, 640
NdeII GATC 5 cut(s) 53, 59, 297, 429, 447
NgoMIV GCCGGC 2 cut(s) 406, 542
NlaIII CATG 5 cut(s) 27, 232, 406, 442, 472
NlaIV GGNNCC 4 cut(s) 29, 95, 344, 603
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 3 cut(s) 142, 883, 943
PciSI GCTCTTC 1 cut(s) 762
PcsI WCGNNNNNNNCGW 3 cut(s) 369, 525, 621
PdiI GCCGGC 2 cut(s) 408, 544
PfeI GAWTC 4 cut(s) 13, 194, 612, 1029
PflFI GACNNNGTC 1 cut(s) 889
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 6 cut(s) 271, 367, 412, 491, 754, 1048
PleI GAGTC 3 cut(s) 253, 400, 800
PpsI GAGTC 3 cut(s) 253, 400, 800
PpuMI RGGWCCY 1 cut(s) 93
Psp124BI GAGCTC 2 cut(s) 23, 378
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 723, 1035
PspFI CCCAGC 2 cut(s) 206, 917
PspGI CCWGG 2 cut(s) 723, 1035
PspN4I GGNNCC 4 cut(s) 29, 95, 344, 603
PspPI GGNCC 4 cut(s) 28, 93, 258, 343
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 889
RsaI GTAC 3 cut(s) 317, 731, 842
RsaNI GTAC 3 cut(s) 316, 730, 841
SacI GAGCTC 2 cut(s) 23, 378
SacII CCGCGG 1 cut(s) 493
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 999
SatI GCNGC 6 cut(s) 270, 366, 411, 490, 753, 1047
Sau3AI GATC 5 cut(s) 53, 59, 297, 429, 447
Sau96I GGNCC 4 cut(s) 28, 93, 258, 343
SchI GAGTC 3 cut(s) 254, 401, 800
ScrFI CCNGG 5 cut(s) 199, 257, 640, 725, 1037
SduI GDGCHC 4 cut(s) 23, 378, 576, 723
SfaNI GCATC 2 cut(s) 300, 997
Sfr303I CCGCGG 1 cut(s) 493
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 2 cut(s) 93, 343
Sse9I AATT 5 cut(s) 214, 902, 983, 1069, 1090
SspMI CTAG 1 cut(s) 609
SstI GAGCTC 2 cut(s) 23, 378
StyD4I CCNGG 5 cut(s) 197, 255, 638, 723, 1035
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 1 cut(s) 531
TaqI TCGA 6 cut(s) 423, 570, 785, 816, 977, 1032
TasI AATT 5 cut(s) 214, 902, 983, 1069, 1090
TatI WGTACW 1 cut(s) 729
TauI GCSGC 5 cut(s) 272, 368, 413, 492, 755
TfiI GAWTC 4 cut(s) 13, 194, 612, 1029
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TseFI GTSAC 3 cut(s) 142, 883, 943
TseI GCWGC 1 cut(s) 1046
Tsp45I GTSAC 3 cut(s) 142, 883, 943
TspGWI ACGGA 2 cut(s) 130, 238
Tth111I GACNNNGTC 1 cut(s) 889
VpaK11BI GGWCC 2 cut(s) 93, 343
XapI RAATTY 1 cut(s) 983
XbaI TCTAGA 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XspI CTAG 1 cut(s) 609
ZraI GACGTC 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.