Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016122

Physical Location & Seq

Genomic Coordinates Reverse (-)

9355752 .. 9360402

Gene Structure 4651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2769 bp

ATGAATATAGCCTTGCTTCTGCTTTTTTTGGTTTTCTGTAAGGGTTCTCATACTAGTGGACTCATTACTAATGTCACTACAAGACCTGATGTATTGAACATTGGTTCGATGTTCACTTTCAATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCAATGGCACAAAGCTCTCACTCAAAATGCATAACACCAAATCGAGTGACTTCCTCGGAATCGTTGAAGCTTTGCAGTTTATGGAGAATGACACAGTGGCCATAATTGGCCCCCAATTCTCAGCTACAGCTCACGTTATCTCACACATAGCAAATGAGCTCCAAGTGCCTTTGTTATCATTTGCAGCAACAGATCCTACTCTATCTTCTGTTCAGTTCCCTTTCTTGGTTCGAACAACGCGAAGCGATCTCTTTCAGATGACAGCAGTGGTAGACCTTGTTGTTCACTACGAGTGGAGAGATGTCATAGCAATATATGTAGATGACGATTTTGGAAGAAATGCTATTGCTTCCTTGGGTGATAAGCTAGCCGAAAAGCGCTGCAAGATTTCATACAAAGTGCCTTTGACTCCCACAGCAACAAAAGATGAGATCAGAAAGGCACTGATCAGTGTGTCTACAATGGAGTCTAGGATTCTGATCCTGCACATTTATACTAGTTGGGGTCTGCAAGTACTTGAAGAAGCGCAGGAGCAGAAGATGATGGATAGTGGATATGTGTGGATTGCTACTGATTGGTTCTCCACCATTTTAGATACAGATCCTTCTCTCCCTCTAGTGCAAACAAACAACATCCAAGGCGTTCTCACATTGCGAATGTACACACCTGATTCACAACTGAAGACTGAATTCAAGTCGAGATGGAGCAACTTGACTAGGGCAAGAAGATTACTCAATAACACTTCTTGTGGGTTAAATACATATGGCCTATACGCGTATGATTCGGTGTTGCTTCTTGCTCAAGCAATCGAATCATTTTTCGCTAATGGGAGGAATATTTCCTTTTCAAATGACACAAATTTGAGGGAGTTAAGTGGTGGGAAGTTGAATCTTGATGCTTTGAACATTTTCAATGGAGGCAGGCAATTGCTCAAAAGCATTTTAGAGGTTAACACGACTGGCTTAACAGGGCCAATTAAGTTTGATGCAGATGGGAACTTACTCAATCCTGCATTTGAAGTCATCAATGTGATTGGCACAGGGACTAGAACTATTGGCTATTGGTCTAACTCCTCTGGTTTAAATGTTCTTCCTCCAGAAAAGCTCCAAATGAAGATGCAGACTAATGGCTCCAGCGCCGGTGCTCAAAATCTGTACAGTGTGATCTGGCCTGGACAAACAACTGAGAAGCCTCGCGGATGGGTTTTCCCTTACAATGGCAGAAAGCTCAAGATTGGAGTCCCCCGTCGAGTCAGCTACCGCGAGTTTGTGGGTATACAAGGCACTGATTTCACTGGTTACTGCATTGAGGTCTTTCAAGCTGCGCTAAATGAGTTACCATATGGTGTACCATACAAGTATGTCCCTTTTGGAGATGGTATCACAAACCCAGAAAACAATGACCTTCTGCACAGAATCCAAATTGGGGAGTTTGATGGTGTAGTAGGAGATATTACAATCACTACTAACAGAACAAAGATGGTGGATTTTACTCAACCTTATATTGAGTCTGGGCTAGTTGTGGTTGCTCCAATAAGGAAGATGAACTCAAGTGCTTGGGCTTTTCTGAGACCCTTTACTCCAATGATGTGGGGTGTTACTGGTGTTTTCTTCCTAGTTGTGGGAGCAGTTATTTGGATTTTGGAGCGCAGGACTAATGAGGATTTTAGGGGGCATCCAAGAAGACAATTTGTGACAATTGTTTGGTTTAGCTTTTCAACTTTGTTCTTCTCCCAGAAAGAGAAAACTGGCAGCACACTTGGTCGCTTTGTGCTGATCATATGGCTATTTGTGGTACTAATACTCAACTCCAGCTACACTGCAAGCTTGACTTCGATCCTCACAGTGGAGCAACTTTCGTCACCTGTGAAAGGGATTGAAAGTTTAGCAACAGGCACTGAGCCCATTGGTTATCTAAGGGGTTCCTTTGCTGAAGCTTACTTAACCGACGAGCTGAACATACATCATAACAGACTCTTTCCCCTTAACTCGCCGGAAGAGTATGAGAAGGCCTTGAAGAAAGGTCCTAGTGCAGGTGGTGTTGCTGCAGTGATTGATGAGCGTGCTTACATGGAGCTCTTCCTCTCTAGTCGATGTGGATATAGTATTGTTGGTCAAGAGTTCACTAAAATGGGTTGGGGATTTGCCTTTCCAAGGGACTCGCCGTTGGCAATCGACATGTCGACCGCCATATTGAAGCTATCGGAGAACGGAAACCTGCAAAAGATTCATGACAAGTGGCTAATGAAAAGTGCTTGCAGTGCAGAAGGAGCAAAGCAAGCAGTAGACCGCCTTCAGCTAAAGAGCTTTTGGGGCCTCTTTCTACTAAGCGGCATTGCTTGCTTTCTTGCTCTTCTTCTTCATGTTCTTCGCATGGTTCGACAGTACTACCGGCATGCAGATTCCGACATCGAGAGCTCGCAATCTACAGGACGACTGAAGTCGTTTGTTTCGTTTGTAAATAAGAGGGAACAAGAAGTGAAAAGCAGTTCCAAGAGGAGGACTGATAATAAAGCCTCAAATAAGATAGTGCATGATCAAGAATGCAGTAGCGATGGTTTCGATGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

922

Amino Acids

102.76

Weight (kDa)

8.19

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	45 - 337	8.5e-13	Periplasmic binding protein
ANF_receptor	PF01094	49 - 411	4.7e-92	Receptor family ligand binding region
SBP_bac_3	PF00497	492 - 814	6.5e-12	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	494 - 575	6.1e-08	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	595 - 846	3.3e-35	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36810
fragaria_vesca	FvH4_1g14070
malus_domestica	MD02G1154400.v1.1
prunus_persica	Prupe.7G148600_v2.0.a1
pyrus_communis	pycom02g12210
rosa_chinensis	RchiOBHm_Chr2g0102671
rosa_laevigata	RLG00000017165
rosa_multiflora	Rmu_sc0008034.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140400
rosa_rugosa	Rorug02G0108600
rosa_samantha	Rh2AG157400 Rh2BG163700 Rh2CG162900 Rh2DG162600
rosa_wichuraiana	Rw2G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2219
Acc36I	ACCTGC	2 cut(s)	2219, 2421
AccI	GTMKAC	5 cut(s)	468, 653, 1471, 2378, 2481
AccII	CGCG	4 cut(s)	436, 971, 1392, 1458
AciI	CCGC	6 cut(s)	164, 1392, 1456, 2382, 2485, 2526
AclWI	GGATC	4 cut(s)	383, 670, 791, 2026
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	884, 1054
AcuI	CTGAAG	4 cut(s)	896, 2148, 2474, 2654
AfaI	GTAC	6 cut(s)	711, 857, 1352, 1545, 1992, 2582
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1816, 2041, 2066, 2228, 2349, 2694
AflIII	ACRYGT	2 cut(s)	969, 2373
AhlI	ACTAGT	2 cut(s)	53, 692
AjnI	CCWGG	1 cut(s)	1366
Alw21I	GWGCWC	4 cut(s)	357, 1342, 2274, 2615
Alw26I	GTCTC	1 cut(s)	1759
AlwI	GGATC	4 cut(s)	383, 670, 791, 2026
AlwNI	CAGNNNCTG	1 cut(s)	2093
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	7 cut(s)	294, 304, 961, 1166, 1364, 2205, 2509
ApeKI	GCWGC	5 cut(s)	380, 576, 1517, 1947, 2240
ApoI	RAATTY	2 cut(s)	884, 1054
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspLEI	GCGC	5 cut(s)	576, 724, 1334, 1522, 1845
AspS9I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
AsuHPI	GGTGA	2 cut(s)	566, 2049
AsuII	TTCGAA	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	2219
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
BarI	GAAGNNNNNNTAC	2 cut(s)	2472, 2504
BbsI	GAAGAC	2 cut(s)	884, 1885
Bbv12I	GWGCWC	4 cut(s)	357, 1342, 2274, 2615
BbvI	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BccI	CCATC	8 cut(s)	733, 891, 1181, 1389, 1565, 1625, 1669, 2744
BceAI	ACGGC	1 cut(s)	2344
BciT130I	CCWGG	1 cut(s)	1368
BclI	TGATCA	3 cut(s)	642, 1971, 2731
BcoDI	GTCTC	1 cut(s)	1759
BcuI	ACTAGT	2 cut(s)	53, 692
BfmI	CTRYAG	3 cut(s)	321, 2241, 2622
BfoI	RGCGCY	2 cut(s)	577, 1335
BfuAI	ACCTGC	2 cut(s)	2219, 2421
BisI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
BlsI	GCNGC	6 cut(s)	382, 578, 1519, 1949, 2242, 2528
BmcAI	AGTACT	2 cut(s)	711, 2582
Bme1390I	CCNGG	1 cut(s)	1368
Bme18I	GGWCC	1 cut(s)	2219
BmgT120I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
BmiI	GGNNCC	4 cut(s)	307, 1327, 2119, 2510
BmrFI	CCNGG	1 cut(s)	1368
BmsI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
BmtI	GCTAGC	1 cut(s)	566
BoxI	GACNNNNGTC	1 cut(s)	2635
BpiI	GAAGAC	2 cut(s)	884, 1885
BpmI	CTGGAG	3 cut(s)	1275, 1312, 1990
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	3 cut(s)	981, 1409, 1729
BsaBI	GATNNNNATC	2 cut(s)	674, 795
BsaI	GGTCTC	1 cut(s)	1759
BsaJI	CCNNGG	4 cut(s)	250, 549, 832, 2348
Bsc4I	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1816, 2041, 2066, 2228, 2349, 2694
Bse118I	RCCGGY	2 cut(s)	1334, 2586
Bse1I	ACTGG	4 cut(s)	1159, 1495, 1801, 1948
Bse3DI	GCAATG	2 cut(s)	845, 2529
Bse8I	GATNNNNATC	2 cut(s)	674, 795
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	4 cut(s)	250, 549, 832, 2348
BseGI	GGATG	3 cut(s)	828, 1400, 1870
BseJI	GATNNNNATC	2 cut(s)	674, 795
BseLI	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1816, 2041, 2066, 2228, 2349, 2694
BseMI	GCAATG	2 cut(s)	845, 2529
BseMII	CTCAG	4 cut(s)	330, 1371, 1754, 2085
BseNI	ACTGG	4 cut(s)	1159, 1495, 1801, 1948
BseRI	GAGGAG	2 cut(s)	1258, 2707
BseXI	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BsgI	GTGCAG	4 cut(s)	665, 1589, 2247, 2478
Bsh1236I	CGCG	4 cut(s)	436, 971, 1392, 1458
Bsh1285I	CGRYCG	1 cut(s)	2382
BshFI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 2207, 2511
BsiEI	CGRYCG	1 cut(s)	2382
BsiHKAI	GWGCWC	4 cut(s)	357, 1342, 2274, 2615
BsiSI	CCGG	3 cut(s)	1335, 2189, 2587
BslFI	GGGAC	4 cut(s)	1252, 1421, 1544, 2366
BslI	CCNNNNNNNGG	9 cut(s)	421, 1412, 1621, 1816, 2041, 2066, 2228, 2349, 2694
BsmAI	GTCTC	1 cut(s)	1759
BsmFI	GGGAC	4 cut(s)	1252, 1421, 1544, 2366
BsmI	GAATGC	1 cut(s)	2744
BsnI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 2207, 2511
Bso31I	GGTCTC	1 cut(s)	1759
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	5 cut(s)	357, 1342, 2100, 2274, 2615
Bsp1407I	TGTACA	2 cut(s)	855, 1350
BspACI	CCGC	6 cut(s)	164, 1392, 1456, 2382, 2485, 2526
BspANI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 2207, 2511
BspCNI	CTCAG	4 cut(s)	329, 1372, 1755, 2086
BspFNI	CGCG	4 cut(s)	436, 971, 1392, 1458
BspHI	TCATGA	1 cut(s)	2425
BspLI	GGNNCC	4 cut(s)	307, 1327, 2119, 2510
BspMAI	CTGCAG	1 cut(s)	2245
BspMI	ACCTGC	2 cut(s)	2219, 2421
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	4 cut(s)	383, 670, 791, 2026
BspQI	GCTCTTC	2 cut(s)	2279, 2553
BspT104I	TTCGAA	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	1759
BsrDI	GCAATG	2 cut(s)	845, 2529
BsrFI	RCCGGY	2 cut(s)	1334, 2586
BsrGI	TGTACA	2 cut(s)	855, 1350
BsrI	ACTGG	4 cut(s)	1159, 1495, 1801, 1948
BssAI	RCCGGY	2 cut(s)	1334, 2586
BssECI	CCNNGG	4 cut(s)	250, 549, 832, 2348
BssNAI	GTATAC	1 cut(s)	1472
BssT1I	CCWWGG	3 cut(s)	549, 832, 2348
Bst1107I	GTATAC	1 cut(s)	1472
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	4 cut(s)	292, 1355, 2041, 2580
Bst6I	CTCTTC	3 cut(s)	2187, 2279, 2553
BstAPI	GCANNNNNTGC	2 cut(s)	149, 2535
BstAUI	TGTACA	2 cut(s)	855, 1350
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	9 cut(s)	564, 1118, 2020, 2259, 2452, 2475, 2536, 2592, 2615
BstDEI	CTNAG	6 cut(s)	316, 1380, 1763, 2094, 2111, 2522
BstENI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
BstF5I	GGATG	3 cut(s)	828, 1400, 1870
BstFNI	CGCG	4 cut(s)	436, 971, 1392, 1458
BstH2I	RGCGCY	2 cut(s)	577, 1335
BstHHI	GCGC	5 cut(s)	576, 724, 1334, 1522, 1845
BstMAI	GTCTC	1 cut(s)	1759
BstMCI	CGRYCG	1 cut(s)	2382
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
BstNI	CCWGG	1 cut(s)	1368
BstNSI	RCATGY	2 cut(s)	2377, 2594
BstPAI	GACNNNNGTC	1 cut(s)	2635
BstSCI	CCNGG	1 cut(s)	1366
BstSFI	CTRYAG	3 cut(s)	321, 2241, 2622
BstUI	CGCG	4 cut(s)	436, 971, 1392, 1458
BstV1I	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
BstV2I	GAAGAC	2 cut(s)	884, 1885
BstX2I	RGATCY	2 cut(s)	388, 796
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BstYI	RGATCY	2 cut(s)	388, 796
BstZ17I	GTATAC	1 cut(s)	1472
BsuRI	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 2207, 2511
BtgZI	GCGATG	1 cut(s)	2763
BtsCI	GGATG	3 cut(s)	828, 1400, 1870
BtsI	GCAGTG	4 cut(s)	468, 2013, 2250, 2461
BveI	ACCTGC	2 cut(s)	2219, 2421
Cac8I	GCNNGC	9 cut(s)	564, 1118, 2020, 2259, 2452, 2475, 2536, 2592, 2615
CaiI	CAGNNNCTG	1 cut(s)	2093
CciI	TCATGA	1 cut(s)	2425
CfoI	GCGC	5 cut(s)	576, 724, 1334, 1522, 1845
Cfr10I	RCCGGY	2 cut(s)	1334, 2586
Cfr13I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
Csp6I	GTAC	6 cut(s)	710, 856, 1351, 1544, 1991, 2581
CspCI	CAANNNNNGTGG	2 cut(s)	1659, 1694
CviAII	CATG	7 cut(s)	2266, 2374, 2426, 2558, 2569, 2591, 2729
CviQI	GTAC	6 cut(s)	710, 856, 1351, 1544, 1991, 2581
DdeI	CTNAG	6 cut(s)	316, 1380, 1763, 2094, 2111, 2522
DraI	TTTAAA	1 cut(s)	1278
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	3 cut(s)	2187, 2279, 2553
EarI	CTCTTC	3 cut(s)	2187, 2279, 2553
Ecl136II	GAGCTC	3 cut(s)	355, 2272, 2613
Eco130I	CCWWGG	3 cut(s)	549, 832, 2348
Eco147I	AGGCCT	1 cut(s)	2207
Eco24I	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
Eco31I	GGTCTC	1 cut(s)	1759
Eco47I	GGWCC	1 cut(s)	2219
Eco47III	AGCGCT	1 cut(s)	575
Eco53kI	GAGCTC	3 cut(s)	355, 2272, 2613
Eco57I	CTGAAG	4 cut(s)	896, 2148, 2474, 2654
EcoICRI	GAGCTC	3 cut(s)	355, 2272, 2613
EcoNI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
EcoO109I	RGGNCCY	2 cut(s)	2219, 2509
EcoRI	GAATTC	1 cut(s)	884
EcoRII	CCWGG	1 cut(s)	1366
EcoT14I	CCWWGG	3 cut(s)	549, 832, 2348
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
ErhI	CCWWGG	3 cut(s)	549, 832, 2348
FaeI	CATG	7 cut(s)	2269, 2377, 2429, 2561, 2572, 2594, 2732
FalI	AAGNNNNNCTT	2 cut(s)	2011, 2043
FaqI	GGGAC	4 cut(s)	1252, 1421, 1544, 2366
FatI	CATG	7 cut(s)	2265, 2373, 2425, 2557, 2568, 2590, 2728
FauNDI	CATATG	3 cut(s)	958, 1537, 1976
FbaI	TGATCA	3 cut(s)	642, 1971, 2731
FblI	GTMKAC	5 cut(s)	468, 653, 1471, 2378, 2481
Fnu4HI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
FokI	GGATG	3 cut(s)	815, 1407, 1857
FriOI	GRGCYC	4 cut(s)	357, 2100, 2274, 2615
Fsp4HI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
GlaI	GCGC	5 cut(s)	575, 723, 1333, 1521, 1844
GluI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
GsuI	CTGGAG	3 cut(s)	1275, 1312, 1990
HaeII	RGCGCY	2 cut(s)	577, 1335
HaeIII	GGCC	7 cut(s)	296, 306, 963, 1168, 1366, 2207, 2511
HapII	CCGG	3 cut(s)	1335, 2189, 2587
HhaI	GCGC	5 cut(s)	576, 724, 1334, 1522, 1845
Hin1II	CATG	7 cut(s)	2269, 2377, 2429, 2561, 2572, 2594, 2732
Hin6I	GCGC	5 cut(s)	574, 722, 1332, 1520, 1843
HinP1I	GCGC	5 cut(s)	574, 722, 1332, 1520, 1843
HincII	GTYRAC	2 cut(s)	1147, 2379
HindII	GTYRAC	2 cut(s)	1147, 2379
HindIII	AAGCTT	3 cut(s)	264, 2020, 2130
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	3 cut(s)	1335, 2189, 2587
HphI	GGTGA	2 cut(s)	566, 2049
Hpy188I	TCNGA	7 cut(s)	254, 453, 632, 675, 1764, 2401, 2602
Hpy188III	TCNNGA	8 cut(s)	894, 1088, 1292, 1426, 2312, 2426, 2608, 2735
Hpy99I	CGWCG	2 cut(s)	1446, 2147
HpyAV	CCTTC	5 cut(s)	810, 1610, 2197, 2456, 2498
HpyCH4III	ACNGT	4 cut(s)	292, 1355, 2041, 2580
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
HpyF3I	CTNAG	6 cut(s)	316, 1380, 1763, 2094, 2111, 2522
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	7 cut(s)	2269, 2377, 2429, 2561, 2572, 2594, 2732
HspAI	GCGC	5 cut(s)	574, 722, 1332, 1520, 1843
Ksp22I	TGATCA	3 cut(s)	642, 1971, 2731
KspAI	GTTAAC	1 cut(s)	1147
LguI	GCTCTTC	2 cut(s)	2279, 2553
Lsp1109I	GCAGC	5 cut(s)	392, 563, 1504, 1959, 2227
LweI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	7 cut(s)	73, 242, 1493, 1530, 1792, 1888, 2055
MfeI	CAATTG	2 cut(s)	1121, 1893
MflI	RGATCY	2 cut(s)	388, 796
MhlI	GDGCHC	5 cut(s)	357, 1342, 2100, 2274, 2615
MlsI	TGGCCA	1 cut(s)	296
MluI	ACGCGT	1 cut(s)	969
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	8 cut(s)	54, 598, 671, 1443, 1455, 1712, 2163, 2348
MmeI	TCCRAC	1 cut(s)	2625
Mox20I	TGGCCA	1 cut(s)	296
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	9 cut(s)	950, 1067, 1146, 1160, 1173, 1277, 2138, 2181, 2767
MslI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	3 cut(s)	1335, 2189, 2587
MspR9I	CCNGG	1 cut(s)	1368
MunI	CAATTG	2 cut(s)	1121, 1893
Mva1269I	GAATGC	1 cut(s)	2744
MvaI	CCWGG	1 cut(s)	1368
MvnI	CGCG	4 cut(s)	436, 971, 1392, 1458
MwoI	GCNNNNNNNGC	7 cut(s)	149, 361, 2456, 2465, 2474, 2508, 2535
NdeI	CATATG	3 cut(s)	958, 1537, 1976
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	7 cut(s)	2269, 2377, 2429, 2561, 2572, 2594, 2732
NlaIV	GGNNCC	4 cut(s)	307, 1327, 2119, 2510
NmuCI	GTSAC	4 cut(s)	73, 242, 1888, 2055
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	2 cut(s)	2377, 2594
NspV	TTCGAA	1 cut(s)	427
PaeI	GCATGC	1 cut(s)	2594
PagI	TCATGA	1 cut(s)	2425
PaqCI	CACCTGC	1 cut(s)	2219
PceI	AGGCCT	1 cut(s)	2207
PciI	ACATGT	1 cut(s)	2373
PciSI	GCTCTTC	2 cut(s)	2279, 2553
PcsI	WCGNNNNNNNCGW	3 cut(s)	433, 2572, 2645
PctI	GAATGC	1 cut(s)	2744
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	9 cut(s)	255, 670, 866, 977, 1007, 1084, 1611, 2422, 2597
PkrI	GCNGC	6 cut(s)	382, 578, 1519, 1949, 2242, 2528
PleI	GAGTC	8 cut(s)	54, 598, 670, 1442, 1454, 1711, 2163, 2348
PpsI	GAGTC	8 cut(s)	54, 598, 670, 1442, 1454, 1711, 2163, 2348
PpuMI	RGGWCCY	1 cut(s)	2219
PscI	ACATGT	1 cut(s)	2373
PshAI	GACNNNNGTC	1 cut(s)	2635
Psp124BI	GAGCTC	3 cut(s)	357, 2274, 2615
Psp5II	RGGWCCY	1 cut(s)	2219
Psp6I	CCWGG	1 cut(s)	1366
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	4 cut(s)	307, 1327, 2119, 2510
PspPI	GGNCC	4 cut(s)	305, 1166, 2219, 2509
PspPPI	RGGWCCY	1 cut(s)	2219
PstI	CTGCAG	1 cut(s)	2245
PstNI	CAGNNNCTG	1 cut(s)	2093
PsuI	RGATCY	2 cut(s)	388, 796
RsaI	GTAC	6 cut(s)	711, 857, 1352, 1545, 1992, 2582
RsaNI	GTAC	6 cut(s)	710, 856, 1351, 1544, 1991, 2581
RseI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SacI	GAGCTC	3 cut(s)	357, 2274, 2615
SalI	GTCGAC	1 cut(s)	2377
SapI	GCTCTTC	2 cut(s)	2279, 2553
SaqAI	TTAA	9 cut(s)	950, 1067, 1146, 1160, 1173, 1277, 2138, 2181, 2767
SatI	GCNGC	6 cut(s)	381, 577, 1518, 1948, 2241, 2527
Sau96I	GGNCC	4 cut(s)	305, 1166, 2219, 2509
ScaI	AGTACT	2 cut(s)	711, 2582
SchI	GAGTC	8 cut(s)	54, 598, 671, 1443, 1455, 1712, 2163, 2348
ScrFI	CCNGG	1 cut(s)	1368
SduI	GDGCHC	5 cut(s)	357, 1342, 2100, 2274, 2615
SfaNI	GCATC	4 cut(s)	1081, 1171, 1302, 1879
SfcI	CTRYAG	3 cut(s)	321, 2241, 2622
SfuI	TTCGAA	1 cut(s)	427
SgrAI	CRCCGGYG	1 cut(s)	1334
SinI	GGWCC	1 cut(s)	2219
SmiMI	CAYNNNNRTG	3 cut(s)	54, 1223, 2324
SmlI	CTYRAG	3 cut(s)	996, 1424, 1744
SmoI	CTYRAG	3 cut(s)	996, 1424, 1744
SpeI	ACTAGT	2 cut(s)	53, 692
SphI	GCATGC	1 cut(s)	2594
SseBI	AGGCCT	1 cut(s)	2207
SsiI	CCGC	6 cut(s)	164, 1392, 1456, 2382, 2485, 2526
SspI	AATATT	1 cut(s)	1033
SstI	GAGCTC	3 cut(s)	357, 2274, 2615
StuI	AGGCCT	1 cut(s)	2207
StyD4I	CCNGG	1 cut(s)	1366
StyI	CCWWGG	3 cut(s)	549, 832, 2348
TaaI	ACNGT	4 cut(s)	292, 1355, 2041, 2580
TaiI	ACGT	1 cut(s)	333
TatI	WGTACW	4 cut(s)	709, 855, 1350, 2580
TauI	GCSGC	1 cut(s)	2529
TfiI	GAWTC	9 cut(s)	255, 670, 866, 977, 1007, 1084, 1611, 2422, 2597
Tru1I	TTAA	9 cut(s)	950, 1067, 1146, 1160, 1173, 1277, 2138, 2181, 2767
Tru9I	TTAA	9 cut(s)	950, 1067, 1146, 1160, 1173, 1277, 2138, 2181, 2767
TseFI	GTSAC	4 cut(s)	73, 242, 1888, 2055
TseI	GCWGC	5 cut(s)	380, 576, 1517, 1947, 2240
Tsp45I	GTSAC	4 cut(s)	73, 242, 1888, 2055
TspDTI	ATGAA	7 cut(s)	17, 576, 1322, 1754, 2414, 2456, 2546
TspGWI	ACGGA	1 cut(s)	2421
VpaK11BI	GGWCC	1 cut(s)	2219
XagI	CCTNNNNNAGG	3 cut(s)	2064, 2226, 2347
XapI	RAATTY	2 cut(s)	884, 1054
XceI	RCATGY	2 cut(s)	2377, 2594
XmiI	GTMKAC	5 cut(s)	468, 653, 1471, 2378, 2481
XmnI	GAANNNNTTC	1 cut(s)	1103
ZrmI	AGTACT	2 cut(s)	711, 2582
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.