Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016122

Physical Location & Seq

Genomic Coordinates Forward (+)

7776654 .. 7779114

Gene Structure 2461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGCTGTGTGAATCTGAGCTCATGGGGCCAAGCCTGCTCAATGTTGAACCGATCCAGATCCTCCCCATCTCTCCTCCTCCTCCACCCGACCCGACCCGTTTCCTTCTCTTCCCATAAACGCCGCCGCCCCAGCTCCGTCGCAGCAATCCTGACGAAGAAGGAGTCCGCCGTGAACGAAGAATCGACAAAACCCAGTATCAATTTCAAGACTTACATGGTGGAGAAGGCCGAGTCCGTCAACCGGGCCTTGGACGCCGCCGTGTCGCTGAAAGACCCGGTCACGATCCACGAGGCGATGCGGTACTCTCTCCTCGCCGGAGGCAAGCGGGTCCGACCCGTTTTGTGTCTCGCGGCTTGCGAGCTCGTCGGAGGCGACGAGTCCGTGGCGATGCCGGCGGCCTGCGCCGTCGAGATGATCCACACCATGTCGCTGATCCACGACGACTTGCCGTGCATGGACAACGACGACCTCCGCCGTGGGAAACCCACCAACCACAAGGTTTTCGGCGAAGACGTCGCCGTTTTAGCCGGCGACGCGCTTCTCTCCTTCGCGTTTGAGCACCTCGCCGTCTCCACCGTCGGCGTCGAGCCTTCTAGAATCGTCAGAGCGGTTGAGGAGCTCGCCCGGTCAATCGGGTCGGAGGGATTGGTGGCGGGTCAAGTCGTGGATATCCACTCCGAGGGATTATCCGATGTGGGACTGGAGCAGCTGGAGTACATACACATCCACAAAACTGCTGCTCTTCTTGAATGCGCGGTCGTTCTCGGGTCGATTTTGGGCGGCGGGTCGGACACAGAAATAGAGAAGCTCCGGACTTTTGCTAGGTACATTGGATTGTTGTTTCAAGTTGTGGATGACATTCTGGATGTGACAAAGTCTTCACAGGAATTGGGGAAGACTGCTGGGAAGGACTTGTTGGCTGATAAGGTGACTTATCCTAAGCTGATGGGGATTGAGAAATCGAGGGAGTTTGCGGAGAAACTTAACAGGGATGCACAGGAACAGCTCGTCGGATTCAACTCCGAAAAGGCTGCTCCTTTGATTGCTTTGGCTAATTACATTGCTTACAGGCAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004161 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005829 GO:0006629 GO:0006720 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009513 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

361

Amino Acids

39.01

Weight (kDa)

5.97

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	95 - 329	3.1e-60	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36810
fragaria_vesca	FvH4_1g14070
malus_domestica	MD02G1154400.v1.1
prunus_persica	Prupe.7G148600_v2.0.a1
pyrus_communis	pycom02g12210
rosa_chinensis	RchiOBHm_Chr2g0102671
rosa_laevigata	RLG00000017165
rosa_multiflora	Rmu_sc0008034.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140400
rosa_rugosa	Rorug02G0108600
rosa_samantha	Rh2AG157400 Rh2BG163700 Rh2CG162900 Rh2DG162600
rosa_wichuraiana	Rw2G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	519
AccBSI	CCGCTC	1 cut(s)	611
AccII	CGCG	4 cut(s)	353, 539, 554, 758
AccIII	TCCGGA	1 cut(s)	813
AclWI	GGATC	5 cut(s)	48, 54, 280, 412, 430
AcyI	GRCGYC	3 cut(s)	255, 516, 585
AfaI	GTAC	3 cut(s)	305, 719, 830
AfiI	CCNNNNNNNGG	3 cut(s)	243, 250, 682
AgsI	TTSAA	5 cut(s)	49, 208, 752, 848, 1021
AjuI	GAANNNNNNNTTGG	2 cut(s)	902, 934
AluBI	AGCT	9 cut(s)	6, 21, 135, 364, 622, 712, 811, 946, 1009
AluI	AGCT	9 cut(s)	6, 21, 135, 364, 622, 712, 811, 946, 1009
Alw21I	GWGCWC	4 cut(s)	23, 366, 564, 624
Alw26I	GTCTC	2 cut(s)	353, 577
AlwI	GGATC	5 cut(s)	48, 54, 280, 412, 430
Ama87I	CYCGRG	1 cut(s)	767
Aor13HI	TCCGGA	1 cut(s)	813
AoxI	GGCC	4 cut(s)	28, 228, 246, 399
ApeKI	GCWGC	4 cut(s)	143, 709, 740, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspLEI	GCGC	3 cut(s)	407, 541, 758
AspS9I	GGNCC	3 cut(s)	28, 246, 331
AsuC2I	CCSGG	3 cut(s)	245, 278, 628
AsuHPI	GGTGA	1 cut(s)	943
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	331
BanII	GRGCYC	3 cut(s)	23, 366, 624
BauI	CACGAG	1 cut(s)	290
BbsI	GAAGAC	3 cut(s)	519, 873, 905
Bbv12I	GWGCWC	4 cut(s)	23, 366, 564, 624
BbvI	GCAGC	4 cut(s)	155, 721, 727, 1021
BccI	CCATC	2 cut(s)	76, 943
BceAI	ACGGC	7 cut(s)	155, 245, 392, 436, 462, 506, 554
BcgI	CGANNNNNNTGC	2 cut(s)	1016, 1050
BcnI	CCSGG	3 cut(s)	245, 278, 628
BcoDI	GTCTC	2 cut(s)	353, 577
BfaI	CTAG	2 cut(s)	597, 825
Bme1390I	CCNGG	3 cut(s)	245, 278, 628
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	3 cut(s)	28, 246, 331
BmiI	GGNNCC	2 cut(s)	29, 332
BmrFI	CCNGG	3 cut(s)	245, 278, 628
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	3 cut(s)	288, 381, 985
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	3 cut(s)	519, 873, 905
BpmI	CTGGAG	2 cut(s)	725, 734
Bpu10I	CCTNAGC	1 cut(s)	942
BpuMI	CCSGG	3 cut(s)	245, 278, 628
BsaBI	GATNNNNATC	1 cut(s)	58
BsaHI	GRCGYC	3 cut(s)	255, 516, 585
BsaJI	CCNNGG	4 cut(s)	249, 384, 478, 681
BsaWI	WCCGGW	1 cut(s)	813
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 250, 682
Bse118I	RCCGGY	2 cut(s)	394, 530
Bse1I	ACTGG	2 cut(s)	195, 708
Bse3DI	GCAATG	1 cut(s)	1062
Bse8I	GATNNNNATC	1 cut(s)	58
BseAI	TCCGGA	1 cut(s)	813
BseDI	CCNNGG	4 cut(s)	249, 384, 478, 681
BseGI	GGATG	4 cut(s)	726, 862, 874, 1000
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	243, 250, 682
BseMI	GCAATG	1 cut(s)	1062
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	2 cut(s)	195, 708
BseRI	GAGGAG	5 cut(s)	65, 68, 71, 302, 632
BseXI	GCAGC	4 cut(s)	155, 721, 727, 1021
BseYI	CCCAGC	2 cut(s)	131, 905
Bsh1236I	CGCG	4 cut(s)	353, 539, 554, 758
Bsh1285I	CGRYCG	1 cut(s)	762
BshFI	GGCC	4 cut(s)	30, 230, 248, 401
BsiEI	CGRYCG	1 cut(s)	762
BsiHKAI	GWGCWC	4 cut(s)	23, 366, 564, 624
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	7 cut(s)	244, 278, 318, 395, 531, 628, 814
BslFI	GGGAC	1 cut(s)	714
BslI	CCNNNNNNNGG	3 cut(s)	243, 250, 682
BsmAI	GTCTC	2 cut(s)	353, 577
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	714
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	4 cut(s)	30, 230, 248, 401
BsoBI	CYCGRG	1 cut(s)	767
Bsp1286I	GDGCHC	4 cut(s)	23, 366, 564, 624
Bsp13I	TCCGGA	1 cut(s)	813
Bsp143I	GATC	5 cut(s)	53, 59, 285, 417, 435
BspANI	GGCC	4 cut(s)	30, 230, 248, 401
BspCNI	CTCAG	1 cut(s)	9
BspEI	TCCGGA	1 cut(s)	813
BspFNI	CGCG	4 cut(s)	353, 539, 554, 758
BspLI	GGNNCC	2 cut(s)	29, 332
BspPI	GGATC	5 cut(s)	48, 54, 280, 412, 430
BspQI	GCTCTTC	1 cut(s)	750
BsrBI	CCGCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	1062
BsrFI	RCCGGY	2 cut(s)	394, 530
BsrI	ACTGG	2 cut(s)	195, 708
BssAI	RCCGGY	2 cut(s)	394, 530
BssECI	CCNNGG	4 cut(s)	249, 384, 478, 681
BssMI	GATC	5 cut(s)	53, 59, 285, 417, 435
BssNI	GRCGYC	3 cut(s)	255, 516, 585
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	2 cut(s)	115, 750
BstACI	GRCGYC	3 cut(s)	255, 516, 585
BstC8I	GCNNGC	8 cut(s)	37, 326, 358, 362, 396, 403, 532, 624
BstDEI	CTNAG	2 cut(s)	17, 942
BstDSI	CCRYGG	2 cut(s)	384, 478
BstF5I	GGATG	4 cut(s)	726, 862, 874, 1000
BstFNI	CGCG	4 cut(s)	353, 539, 554, 758
BstHHI	GCGC	3 cut(s)	407, 541, 758
BstKTI	GATC	5 cut(s)	56, 62, 288, 420, 438
BstMAI	GTCTC	2 cut(s)	353, 577
BstMBI	GATC	5 cut(s)	53, 59, 285, 417, 435
BstMCI	CGRYCG	1 cut(s)	762
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 36, 132, 254, 395, 404, 527, 536
BstSCI	CCNGG	3 cut(s)	243, 276, 626
BstUI	CGCG	4 cut(s)	353, 539, 554, 758
BstV1I	GCAGC	4 cut(s)	155, 721, 727, 1021
BstV2I	GAAGAC	3 cut(s)	519, 873, 905
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	30, 230, 248, 401
BtgI	CCRYGG	2 cut(s)	384, 478
BtgZI	GCGATG	2 cut(s)	311, 404
BtsCI	GGATG	4 cut(s)	726, 862, 874, 1000
Cac8I	GCNNGC	8 cut(s)	37, 326, 358, 362, 396, 403, 532, 624
CfoI	GCGC	3 cut(s)	407, 541, 758
Cfr10I	RCCGGY	2 cut(s)	394, 530
Cfr13I	GGNCC	3 cut(s)	28, 246, 331
CseI	GACGC	3 cut(s)	263, 545, 574
Csp6I	GTAC	3 cut(s)	304, 718, 829
CviAII	CATG	4 cut(s)	24, 217, 427, 457
CviQI	GTAC	3 cut(s)	304, 718, 829
DdeI	CTNAG	2 cut(s)	17, 942
DpnI	GATC	5 cut(s)	55, 61, 287, 419, 437
DpnII	GATC	5 cut(s)	53, 59, 285, 417, 435
Eam1104I	CTCTTC	2 cut(s)	115, 750
EarI	CTCTTC	2 cut(s)	115, 750
EciI	GGCGGA	2 cut(s)	157, 464
Ecl136II	GAGCTC	3 cut(s)	21, 364, 622
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	3 cut(s)	23, 366, 624
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	3 cut(s)	21, 364, 622
Eco88I	CYCGRG	1 cut(s)	767
EcoICRI	GAGCTC	3 cut(s)	21, 364, 622
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	3 cut(s)	23, 366, 624
ErhI	CCWWGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	577
FaeI	CATG	4 cut(s)	27, 220, 430, 460
FaiI	YATR	6 cut(s)	25, 117, 218, 428, 458, 722
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	4 cut(s)	23, 216, 426, 456
FauI	CCCGC	3 cut(s)	321, 649, 779
FokI	GGATG	4 cut(s)	713, 869, 881, 1007
FriOI	GRGCYC	3 cut(s)	23, 366, 624
FspBI	CTAG	2 cut(s)	597, 825
GlaI	GCGC	3 cut(s)	406, 540, 757
GsaI	CCCAGC	2 cut(s)	135, 909
GsuI	CTGGAG	2 cut(s)	725, 734
HaeIII	GGCC	4 cut(s)	30, 230, 248, 401
HapII	CCGG	7 cut(s)	244, 278, 318, 395, 531, 628, 814
HgaI	GACGC	3 cut(s)	263, 545, 574
HhaI	GCGC	3 cut(s)	407, 541, 758
Hin1I	GRCGYC	3 cut(s)	255, 516, 585
Hin1II	CATG	4 cut(s)	27, 220, 430, 460
Hin6I	GCGC	3 cut(s)	405, 539, 756
HinP1I	GCGC	3 cut(s)	405, 539, 756
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	7 cut(s)	13, 164, 182, 233, 380, 600, 1017
HpaII	CCGG	7 cut(s)	244, 278, 318, 395, 531, 628, 814
HphI	GGTGA	1 cut(s)	943
Hpy166II	GTNNAC	2 cut(s)	175, 241
Hpy188III	TCNNGA	9 cut(s)	57, 151, 208, 283, 412, 597, 749, 814, 866
Hpy8I	GTNNAC	2 cut(s)	175, 241
HpyAV	CCTTC	6 cut(s)	115, 154, 220, 559, 603, 904
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	2 cut(s)	456, 998
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 36, 132, 254, 395, 404, 527, 536
HpyF3I	CTNAG	2 cut(s)	17, 942
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	3 cut(s)	255, 516, 585
Hsp92II	CATG	4 cut(s)	27, 220, 430, 460
HspAI	GCGC	3 cut(s)	405, 539, 756
Kpn2I	TCCGGA	1 cut(s)	813
KroI	GCCGGC	2 cut(s)	394, 530
KroNI	GCCGGC	2 cut(s)	396, 532
Kzo9I	GATC	5 cut(s)	53, 59, 285, 417, 435
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	5 cut(s)	140, 619, 706, 816, 1042
Lsp1109I	GCAGC	4 cut(s)	155, 721, 727, 1021
LweI	GCATC	3 cut(s)	288, 381, 985
MaeI	CTAG	2 cut(s)	597, 825
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	280, 871, 931
MalI	GATC	5 cut(s)	55, 61, 287, 419, 437
MbiI	CCGCTC	1 cut(s)	611
MboI	GATC	5 cut(s)	53, 59, 285, 417, 435
MboII	GAAGA	7 cut(s)	102, 169, 191, 524, 737, 873, 910
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	4 cut(s)	23, 366, 564, 624
MluCI	AATT	3 cut(s)	202, 890, 1057
MlyI	GAGTC	3 cut(s)	173, 242, 389
MmeI	TCCRAC	5 cut(s)	349, 358, 621, 771, 994
MroI	TCCGGA	1 cut(s)	813
MroNI	GCCGGC	2 cut(s)	394, 530
MseI	TTAA	1 cut(s)	987
MspA1I	CMGCKG	1 cut(s)	712
MspI	CCGG	7 cut(s)	244, 278, 318, 395, 531, 628, 814
MspR9I	CCNGG	3 cut(s)	245, 278, 628
Mva1269I	GAATGC	1 cut(s)	758
MvnI	CGCG	4 cut(s)	353, 539, 554, 758
MwoI	GCNNNNNNNGC	8 cut(s)	27, 36, 132, 254, 395, 404, 527, 536
NaeI	GCCGGC	2 cut(s)	396, 532
NciI	CCSGG	3 cut(s)	245, 278, 628
NdeII	GATC	5 cut(s)	53, 59, 285, 417, 435
NgoMIV	GCCGGC	2 cut(s)	394, 530
NlaIII	CATG	4 cut(s)	27, 220, 430, 460
NlaIV	GGNNCC	2 cut(s)	29, 332
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	3 cut(s)	280, 871, 931
PciSI	GCTCTTC	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	4 cut(s)	357, 372, 375, 513
PctI	GAATGC	1 cut(s)	758
PdiI	GCCGGC	2 cut(s)	396, 532
PfeI	GAWTC	4 cut(s)	13, 182, 600, 1017
PflFI	GACNNNGTC	2 cut(s)	278, 877
PleI	GAGTC	3 cut(s)	172, 241, 388
PpsI	GAGTC	3 cut(s)	172, 241, 388
Psp124BI	GAGCTC	3 cut(s)	23, 366, 624
PspFI	CCCAGC	2 cut(s)	131, 905
PspN4I	GGNNCC	2 cut(s)	29, 332
PspPI	GGNCC	3 cut(s)	28, 246, 331
PsuI	RGATCY	1 cut(s)	59
PsyI	GACNNNGTC	2 cut(s)	278, 877
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	3 cut(s)	305, 719, 830
RsaNI	GTAC	3 cut(s)	304, 718, 829
SacI	GAGCTC	3 cut(s)	23, 366, 624
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	987
Sau3AI	GATC	5 cut(s)	53, 59, 285, 417, 435
Sau96I	GGNCC	3 cut(s)	28, 246, 331
SchI	GAGTC	3 cut(s)	173, 242, 389
ScrFI	CCNGG	3 cut(s)	245, 278, 628
SduI	GDGCHC	4 cut(s)	23, 366, 564, 624
SfaNI	GCATC	3 cut(s)	288, 381, 985
SinI	GGWCC	1 cut(s)	331
Sse9I	AATT	3 cut(s)	202, 890, 1057
SspMI	CTAG	2 cut(s)	597, 825
SstI	GAGCTC	3 cut(s)	23, 366, 624
StyD4I	CCNGG	3 cut(s)	243, 276, 626
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	5 cut(s)	185, 411, 588, 773, 965
TasI	AATT	3 cut(s)	202, 890, 1057
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	6 cut(s)	126, 129, 260, 356, 401, 786
TfiI	GAWTC	4 cut(s)	13, 182, 600, 1017
Tru1I	TTAA	1 cut(s)	987
Tru9I	TTAA	1 cut(s)	987
TseFI	GTSAC	3 cut(s)	280, 871, 931
TseI	GCWGC	4 cut(s)	143, 709, 740, 1034
Tsp45I	GTSAC	3 cut(s)	280, 871, 931
TspGWI	ACGGA	3 cut(s)	127, 226, 373
Tth111I	GACNNNGTC	2 cut(s)	278, 877
VpaK11BI	GGWCC	1 cut(s)	331
XbaI	TCTAGA	1 cut(s)	596
XspI	CTAG	2 cut(s)	597, 825
ZraI	GACGTC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.