AT4G39795

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017533
Physical Location & Seq
Forward (+)
18466519 .. 18467499
981 bp
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UTR
Exon/CDS
Intron
AT4G39795.1

Sequence Viewer

Length: 381 bp
ATGTTGTTAGGGAATCGACCACGGCCTCAAATGCAGAGAACAGCAAGCATAACGAGGATCACTATCGAAGTTGATGGTGATCAGACCGCCGGCCAAGACTCTGACGTGTCTATGACGGTGGTTGACGGCGGAGAAAATTACGCCCAGCGGTTCTTGTCGCCGGTAAATCACCAGAGGAACGAGAGAAAATACGGTGGGAGATCCTCACCGTCGTCTTTTCTTGTAAACTGTGGCTTTTGCAAACGCGGTCTTGCTCCGGGTCGTGATATTTACATGTACAAAGGGGACGCAGCGTTTTGTAGCATAGAATGCAGAGAACAGCAAATGGAGCACGACGAGGGGAAAACAAGAAACCGCGTCGTACTATCACCTTCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

126

Amino Acids

14.1

Weight (kDa)

8.78

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 66 - 114 8e-24 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39795 AT5G65040
fragaria_vesca FvH4_3g43200
rosa_laevigata RLG00000036674
rosa_multiflora Rmu_sc0005576.1_g000012
rosa_roxburghii Rroxscaffold_1G00004810
rosa_rugosa Rorug05G0452800.1
rosa_samantha Rh5AG507800 Rh5BG529300 Rh5CG553700 Rh5DG541500
rosa_wichuraiana Rw5G046960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 246, 357
AciI CCGC 5 cut(s) 87, 129, 148, 246, 355
AclWI GGATC 2 cut(s) 65, 195
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 2 cut(s) 278, 363
AflIII ACRYGT 2 cut(s) 105, 273
AgsI TTSAA 1 cut(s) 375
AjiI CACGTC 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 2 cut(s) 65, 195
AoxI GGCC 2 cut(s) 23, 91
ApeKI GCWGC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 4 cut(s) 89, 161, 198, 360
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 302
BccI CCATC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 38, 142
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 1 cut(s) 258
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 2 cut(s) 62, 78
BsaJI CCNNGG 1 cut(s) 20
Bse118I RCCGGY 2 cut(s) 89, 160
Bse8I GATNNNNATC 2 cut(s) 62, 78
BseDI CCNNGG 1 cut(s) 20
BseJI GATNNNNATC 2 cut(s) 62, 78
BseXI GCAGC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 144
Bsh1236I CGCG 2 cut(s) 246, 357
BshFI GGCC 2 cut(s) 25, 93
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 3 cut(s) 90, 161, 257
BslFI GGGAC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 2 cut(s) 25, 93
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 3 cut(s) 57, 79, 200
BspACI CCGC 5 cut(s) 87, 129, 148, 246, 355
BspANI GGCC 2 cut(s) 25, 93
BspFNI CGCG 2 cut(s) 246, 357
BspPI GGATC 2 cut(s) 65, 195
BsrFI RCCGGY 2 cut(s) 89, 160
BsrGI TGTACA 1 cut(s) 276
BssAI RCCGGY 2 cut(s) 89, 160
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 57, 79, 200
Bst4CI ACNGT 4 cut(s) 118, 194, 210, 230
BstAPI GCANNNNNTGC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 46, 91
BstDSI CCRYGG 1 cut(s) 20
BstFNI CGCG 2 cut(s) 246, 357
BstKTI GATC 3 cut(s) 60, 82, 203
BstMBI GATC 3 cut(s) 57, 79, 200
BstMWI GCNNNNNNNGC 3 cut(s) 31, 309, 328
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 256
BstUI CGCG 2 cut(s) 246, 357
BstV1I GCAGC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 2 cut(s) 25, 93
BtgI CCRYGG 1 cut(s) 20
BtrI CACGTC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 46, 91
Cfr10I RCCGGY 2 cut(s) 89, 160
CseI GACGC 2 cut(s) 296, 346
Csp6I GTAC 2 cut(s) 277, 362
CviAII CATG 1 cut(s) 274
CviJI RGCY 3 cut(s) 25, 93, 234
CviKI_1 RGCY 3 cut(s) 25, 93, 234
CviQI GTAC 2 cut(s) 277, 362
DpnI GATC 3 cut(s) 59, 81, 202
DpnII GATC 3 cut(s) 57, 79, 200
EaeI YGGCCR 1 cut(s) 91
EciI GGCGGA 1 cut(s) 144
FaeI CATG 1 cut(s) 277
FaiI YATR 4 cut(s) 50, 113, 275, 305
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 273
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 2 cut(s) 25, 93
HapII CCGG 3 cut(s) 90, 161, 257
HgaI GACGC 2 cut(s) 296, 346
Hin1II CATG 1 cut(s) 277
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 13, 98
HpaII CCGG 3 cut(s) 90, 161, 257
HphI GGTGA 4 cut(s) 89, 161, 198, 360
Hpy166II GTNNAC 2 cut(s) 124, 226
Hpy188I TCNGA 2 cut(s) 84, 103
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 124, 226
Hpy99I CGWCG 3 cut(s) 214, 338, 362
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 4 cut(s) 118, 194, 210, 230
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 34, 240, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 309, 328
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 1 cut(s) 277
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 57, 79, 200
LmnI GCTCC 2 cut(s) 259, 328
LpnPI CCDG 5 cut(s) 103, 158, 174, 185, 270
Lsp1109I GCAGC 1 cut(s) 302
MaeII ACGT 1 cut(s) 105
MalI GATC 3 cut(s) 59, 81, 202
MboI GATC 3 cut(s) 57, 79, 200
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 5 cut(s) 36, 48, 168, 214, 331
MroNI GCCGGC 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 3 cut(s) 90, 161, 257
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 314
MvnI CGCG 2 cut(s) 246, 357
MwoI GCNNNNNNNGC 3 cut(s) 31, 309, 328
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 258
NdeII GATC 3 cut(s) 57, 79, 200
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 277
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PctI GAATGC 1 cut(s) 314
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PscI ACATGT 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 278, 363
RsaNI GTAC 2 cut(s) 277, 362
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 3 cut(s) 57, 79, 200
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 333
SetI ASST 2 cut(s) 108, 373
Sse9I AATT 1 cut(s) 136
SsiI CCGC 5 cut(s) 87, 129, 148, 246, 355
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 4 cut(s) 118, 194, 210, 230
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 16, 66
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 13
TseI GCWGC 1 cut(s) 290
XceI RCATGY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.