Rroxscaffold_1G00004810

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017533
Physical Location & Seq
Reverse (-)
6570346 .. 6570890
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004810.1

Sequence Viewer

Length: 420 bp
ATGACAGGGAAACGCATGCGCTTAGTTCGTTCCAAGACAAGTTTTGACGACATGACCACCTTGGATGGCCAGCTGCCACCGCAGGAGAGGCGACAACAGATGAAGCCACCGAGCAGTGAGACTATGATAGGAAAAGAAACTCCCAAGGTACATCATCAACCGGCCGCAACTCTCGCGATGTGGTCAAGTCCTGCCACTCAAGGGAGTTTCCTCGACAAATGCAACTACTGTAGGAAGAGGATCGGTGACAAAGACGAGATCTACATGTACAGTTCGTTGCAGGCGTTCTGTAGCTCTGAGTGCCGAATCCAACAGATACTTGAAGACAAGGCGAGGGAGATGATGATGTGTGGCCAATCGGCGGAAGCCCTTGCGTGGCATCAGAAGATGATCAACAATCTGAAGATAACTTGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

139

Amino Acids

16.0

Weight (kDa)

9.04

Isoelectric Point (pI)

63.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 64 - 111 1.3e-17 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39795 AT5G65040
fragaria_vesca FvH4_3g43200
rosa_laevigata RLG00000036674
rosa_multiflora Rmu_sc0005576.1_g000012
rosa_roxburghii Rroxscaffold_1G00004810
rosa_rugosa Rorug05G0452800.1
rosa_samantha Rh5AG507800 Rh5BG529300 Rh5CG553700 Rh5DG541500
rosa_wichuraiana Rw5G046960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 80, 165, 362
AclWI GGATC 1 cut(s) 248
AcoI YGGCCR 3 cut(s) 67, 162, 352
AfaI GTAC 2 cut(s) 150, 269
AfiI CCNNNNNNNGG 3 cut(s) 201, 361, 375
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 2 cut(s) 73, 294
AluI AGCT 2 cut(s) 73, 294
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 248
AoxI GGCC 3 cut(s) 67, 162, 352
ApeKI GCWGC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 257
BalI TGGCCA 2 cut(s) 69, 354
BbsI GAAGAC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 59
BclI TGATCA 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 229, 289
BglII AGATCT 1 cut(s) 258
BisI GCNGC 2 cut(s) 74, 165
BlsI GCNGC 2 cut(s) 75, 166
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 60, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 361, 375
Bse118I RCCGGY 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 60, 144
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 201, 361, 375
BseMII CTCAG 1 cut(s) 288
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 69, 164, 354
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 201, 361, 375
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 3 cut(s) 69, 164, 354
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 3 cut(s) 240, 258, 390
Bsp68I TCGCGA 1 cut(s) 176
BspACI CCGC 3 cut(s) 80, 165, 362
BspANI GGCC 3 cut(s) 69, 164, 354
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 1 cut(s) 176
BspPI GGATC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 60, 144
BssMI GATC 3 cut(s) 240, 258, 390
BssT1I CCWWGG 2 cut(s) 60, 144
Bst4CI ACNGT 2 cut(s) 230, 272
Bst6I CTCTTC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 267
BstC8I GCNNGC 3 cut(s) 17, 71, 282
BstDEI CTNAG 2 cut(s) 22, 297
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 243, 261, 393
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 240, 258, 390
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 4 cut(s) 79, 88, 173, 300
BstNSI RCATGY 2 cut(s) 19, 268
BstSFI CTRYAG 2 cut(s) 229, 289
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 3 cut(s) 69, 164, 354
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
BtuMI TCGCGA 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 17, 71, 282
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 160
Csp6I GTAC 2 cut(s) 149, 268
CviAII CATG 3 cut(s) 16, 52, 265
CviJI RGCY 7 cut(s) 69, 73, 106, 164, 294, 354, 368
CviKI_1 RGCY 7 cut(s) 69, 73, 106, 164, 294, 354, 368
CviQI GTAC 2 cut(s) 149, 268
DdeI CTNAG 2 cut(s) 22, 297
DpnI GATC 3 cut(s) 242, 260, 392
DpnII GATC 3 cut(s) 240, 258, 390
EaeI YGGCCR 3 cut(s) 67, 162, 352
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 1 cut(s) 377
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 60, 144
Eco52I CGGCCG 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 60, 144
ErhI CCWWGG 2 cut(s) 60, 144
FaeI CATG 3 cut(s) 19, 55, 268
FaiI YATR 5 cut(s) 17, 53, 125, 266, 418
FatI CATG 3 cut(s) 15, 51, 264
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 74, 165
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 74, 165
GlaI GCGC 1 cut(s) 20
GluI GCNGC 2 cut(s) 74, 165
HaeIII GGCC 3 cut(s) 69, 164, 354
HapII CCGG 1 cut(s) 161
HhaI GCGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 19, 55, 268
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 1 cut(s) 306
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 298, 384, 402
Hpy188III TCNNGA 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 230, 272
HpyCH4V TGCA 2 cut(s) 222, 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 88, 173, 300
HpyF3I CTNAG 2 cut(s) 22, 297
Hsp92II CATG 3 cut(s) 19, 55, 268
HspAI GCGC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 3 cut(s) 240, 258, 390
LpnPI CCDG 5 cut(s) 68, 83, 174, 204, 266
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 388
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 242, 260, 392
MboI GATC 3 cut(s) 240, 258, 390
MboII GAAGA 4 cut(s) 247, 335, 397, 415
MflI RGATCY 1 cut(s) 258
MlsI TGGCCA 2 cut(s) 69, 354
MluNI TGGCCA 2 cut(s) 69, 354
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 4 cut(s) 81, 221, 231, 327
Mox20I TGGCCA 2 cut(s) 69, 354
MscI TGGCCA 2 cut(s) 69, 354
Msp20I TGGCCA 2 cut(s) 69, 354
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 79, 88, 173, 300
NdeII GATC 3 cut(s) 240, 258, 390
NlaIII CATG 3 cut(s) 19, 55, 268
NmuCI GTSAC 1 cut(s) 245
NruI TCGCGA 1 cut(s) 176
NspI RCATGY 2 cut(s) 19, 268
PaeI GCATGC 1 cut(s) 19
PciI ACATGT 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 75, 166
PscI ACATGT 1 cut(s) 264
PsuI RGATCY 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 73
RruI TCGCGA 1 cut(s) 176
RsaI GTAC 2 cut(s) 150, 269
RsaNI GTAC 2 cut(s) 149, 268
SatI GCNGC 2 cut(s) 74, 165
Sau3AI GATC 3 cut(s) 240, 258, 390
SetI ASST 4 cut(s) 62, 75, 150, 296
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 2 cut(s) 229, 289
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SphI GCATGC 1 cut(s) 19
SsiI CCGC 3 cut(s) 80, 165, 362
StyI CCWWGG 2 cut(s) 60, 144
TaaI ACNGT 2 cut(s) 230, 272
TaqI TCGA 1 cut(s) 213
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 306
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 121
XceI RCATGY 2 cut(s) 19, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.