FvH4_3g43200

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017533
Physical Location & Seq
Forward (+)
36081632 .. 36082195
564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43200.t1

Sequence Viewer

Length: 417 bp
ATGACAGGAAAACGCATGCGCTTAGTTCGTTCCAAGACGAGCTTCGACGACATGTCCACCCTGGACGACCAACAGCAGACACCGAAGGAGCCGCGGCAAGATATGGAGCCGCCGAGCAACCAGGCCATGATAGAGAAAGAAACTCCCAAGGTACCTCATGTACCGGTAGCACCTCTCGCGATGTGGTCAAGTACTACCACCACTCAAGGGCATTTCCTGGACAAATGCACCTTCTGTAGGAAGAGGATCGGCGACAAAGACGAGATCTACATTTCGTTGCAAGCGTTCTGTAGCTCTGAGTGCCGAATCCAACAGATACTGGAAGACAAGGTTAGGGAGATGATGATGTGTGGGCAATCGGCAGAAGCACTTGCGTGGCATCAGAAGATGATCAACAATCTGAAGATTACTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

139

Amino Acids

15.97

Weight (kDa)

7.64

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 66 - 110 6.6e-14 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39795 AT5G65040
fragaria_vesca FvH4_3g43200
rosa_laevigata RLG00000036674
rosa_multiflora Rmu_sc0005576.1_g000012
rosa_roxburghii Rroxscaffold_1G00004810
rosa_rugosa Rorug05G0452800.1
rosa_samantha Rh5AG507800 Rh5BG529300 Rh5CG553700 Rh5DG541500
rosa_wichuraiana Rw5G046960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 2 cut(s) 94, 179
AciI CCGC 3 cut(s) 92, 94, 110
AclWI GGATC 1 cut(s) 254
AfaI GTAC 3 cut(s) 153, 162, 193
AfiI CCNNNNNNNGG 2 cut(s) 207, 237
AflIII ACRYGT 1 cut(s) 51
AgeI ACCGGT 1 cut(s) 163
AhdI GACNNNNNGTC 1 cut(s) 52
AjnI CCWGG 3 cut(s) 60, 120, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AleI CACNNNNGTG 1 cut(s) 373
AluBI AGCT 2 cut(s) 42, 294
AluI AGCT 2 cut(s) 42, 294
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 1 cut(s) 123
AsiGI ACCGGT 1 cut(s) 163
Asp718I GGTACC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 330
BciT130I CCWGG 3 cut(s) 62, 122, 218
BclI TGATCA 1 cut(s) 390
BfmI CTRYAG 2 cut(s) 235, 289
BglII AGATCT 1 cut(s) 264
BisI GCNGC 3 cut(s) 92, 95, 110
BlsI GCNGC 3 cut(s) 93, 96, 111
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 3 cut(s) 62, 122, 218
BmeRI GACNNNNNGTC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 90, 108, 153
BmrFI CCNGG 3 cut(s) 62, 122, 218
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 60, 92, 147
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 237
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 324
BseBI CCWGG 3 cut(s) 62, 122, 218
BseDI CCNNGG 3 cut(s) 60, 92, 147
BseLI CCNNNNNNNGG 2 cut(s) 207, 237
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 324
Bsh1236I CGCG 2 cut(s) 94, 179
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 151
BshTI ACCGGT 1 cut(s) 163
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 207, 237
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 246, 264, 390
Bsp68I TCGCGA 1 cut(s) 179
BspACI CCGC 3 cut(s) 92, 94, 110
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 2 cut(s) 94, 179
BspLI GGNNCC 3 cut(s) 90, 108, 153
BspPI GGATC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 3 cut(s) 60, 92, 147
BssMI GATC 3 cut(s) 246, 264, 390
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 3 cut(s) 62, 122, 218
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 17, 282
BstDEI CTNAG 2 cut(s) 22, 297
BstDSI CCRYGG 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 235
BstFNI CGCG 2 cut(s) 94, 179
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 249, 267, 393
BstMBI GATC 3 cut(s) 246, 264, 390
BstMWI GCNNNNNNNGC 2 cut(s) 176, 300
BstNI CCWGG 3 cut(s) 62, 122, 218
BstNSI RCATGY 2 cut(s) 19, 55
BstSCI CCNGG 3 cut(s) 60, 120, 216
BstSFI CTRYAG 2 cut(s) 235, 289
BstUI CGCG 2 cut(s) 94, 179
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 194
BtuMI TCGCGA 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 17, 282
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 163
Cfr42I CCGCGG 1 cut(s) 95
Csp6I GTAC 3 cut(s) 152, 161, 192
CspAI ACCGGT 1 cut(s) 163
CviAII CATG 4 cut(s) 16, 52, 127, 158
CviJI RGCY 5 cut(s) 42, 91, 109, 125, 294
CviKI_1 RGCY 5 cut(s) 42, 91, 109, 125, 294
CviQI GTAC 3 cut(s) 152, 161, 192
DdeI CTNAG 2 cut(s) 22, 297
DpnI GATC 3 cut(s) 248, 266, 392
DpnII GATC 3 cut(s) 246, 264, 390
DriI GACNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 236
Eam1105I GACNNNNNGTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoRII CCWGG 3 cut(s) 60, 120, 216
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 19, 55, 130, 161
FaiI YATR 5 cut(s) 17, 53, 104, 128, 159
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 4 cut(s) 15, 51, 126, 157
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 92, 95, 110
Fsp4HI GCNGC 3 cut(s) 92, 95, 110
GlaI GCGC 1 cut(s) 20
GluI GCNGC 3 cut(s) 92, 95, 110
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 21
Hin1II CATG 4 cut(s) 19, 55, 130, 161
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 1 cut(s) 306
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 298, 384, 402
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 79, 241
HpyCH4V TGCA 2 cut(s) 228, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 300
HpyF3I CTNAG 2 cut(s) 22, 297
Hsp92II CATG 4 cut(s) 19, 55, 130, 161
HspAI GCGC 1 cut(s) 19
KpnI GGTACC 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 390
KspI CCGCGG 1 cut(s) 95
Kzo9I GATC 3 cut(s) 246, 264, 390
LmnI GCTCC 2 cut(s) 88, 106
LpnPI CCDG 8 cut(s) 47, 74, 107, 134, 177, 203, 230, 305
LweI GCATC 1 cut(s) 388
MalI GATC 3 cut(s) 248, 266, 392
MboI GATC 3 cut(s) 246, 264, 390
MboII GAAGA 4 cut(s) 253, 335, 397, 415
MflI RGATCY 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 3 cut(s) 165, 183, 237
MslI CAYNNNNRTG 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 3 cut(s) 62, 122, 218
MvaI CCWGG 3 cut(s) 62, 122, 218
MvnI CGCG 2 cut(s) 94, 179
MwoI GCNNNNNNNGC 2 cut(s) 176, 300
NdeII GATC 3 cut(s) 246, 264, 390
NlaIII CATG 4 cut(s) 19, 55, 130, 161
NlaIV GGNNCC 3 cut(s) 90, 108, 153
NmeAIII GCCGAG 1 cut(s) 138
NruI TCGCGA 1 cut(s) 179
NspI RCATGY 2 cut(s) 19, 55
OliI CACNNNNGTG 1 cut(s) 373
PaeI GCATGC 1 cut(s) 19
PciI ACATGT 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PfeI GAWTC 1 cut(s) 306
PfoI TCCNGGA 1 cut(s) 216
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 3 cut(s) 93, 96, 111
PscI ACATGT 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 60, 120, 216
PspGI CCWGG 3 cut(s) 60, 120, 216
PspN4I GGNNCC 3 cut(s) 90, 108, 153
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 264
RruI TCGCGA 1 cut(s) 179
RsaI GTAC 3 cut(s) 153, 162, 193
RsaNI GTAC 3 cut(s) 152, 161, 192
RseI CAYNNNNRTG 1 cut(s) 373
SacII CCGCGG 1 cut(s) 95
SatI GCNGC 3 cut(s) 92, 95, 110
Sau3AI GATC 3 cut(s) 246, 264, 390
ScaI AGTACT 1 cut(s) 193
ScrFI CCNGG 3 cut(s) 62, 122, 218
SetI ASST 7 cut(s) 44, 153, 157, 175, 233, 296, 333
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 2 cut(s) 235, 289
Sfr303I CCGCGG 1 cut(s) 95
SgrBI CCGCGG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SphI GCATGC 1 cut(s) 19
SsiI CCGC 3 cut(s) 92, 94, 110
StyD4I CCNGG 3 cut(s) 60, 120, 216
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 1 cut(s) 45
TatI WGTACW 1 cut(s) 191
TauI GCSGC 3 cut(s) 94, 97, 112
TfiI GAWTC 1 cut(s) 306
XagI CCTNNNNNAGG 1 cut(s) 235
XceI RCATGY 2 cut(s) 19, 55
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.