Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012889

Physical Location & Seq

Genomic Coordinates Forward (+)

208866 .. 210548

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCCGCAACATCCGCCGCTGCTGCAGCTGCTTCTTCCATCATGGGTACTCGGGTGGCTCCCGGTATCCATCCCGGTTCAGGTCGGTTCACAGCCGTGTTCGGTTTCGGAAAGAAGAAGGCAGCTCCCAAAAAGAGTGCCAAAAAGACGGTGACTACGGACCGGCCTCTTTGGTACCCAGGCGCCATTTCTCCTGACTGGCTTGATGGTTCCTTGGTTGGAGATTACGGTTTTGATCCCTTCGGTTTAGGCAAACCGGCCGAGTATCTTCAATTCGATATCGATTCACTAGACCAGAATCTGGCTAAGAACTTGGCCGGAGACGTGATCGGAACCCGTACGGAAGCTGCCGACGCCAAATCGACGCCGTTTCAGCCGTACAGTGAGGTGTTCGGAATCCAGAGATTCAGGGAATGCGAACTCATCCACGGACGGTGGGCGATGCTCGCTACTCTCGGCGCTCTCTCCGTCGAATGGCTTACCGGCGTTACATGGCAAGACGCTGGCAAGGTGGAGCTTGTAGATGGATCGTCCTACTTGGGGCAGCCATTACCTTTCTCGATCTCGACATTGATATGGATCGAGGTGTTAGTGATCGGCTACATCGAGTTCCAGCGCAACGCCGAGCTTGATTCGGAGAAGCGTTTATACCCCGGAGGCAAGTTCTTTGACCCGCTAGGTTTAGCGGCTGACCCGGAGAAGACTGCTCAACTTCAGTTAGCTGAGATCAAGCATGCACGTCTTGCGATGGTCGCCTTCTTGGGATTCGCGGTTCAAGCGGCTGCAACAGGTAAAGGTCCACTCAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTTCTCCTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010033 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

290

Amino Acids

31.14

Weight (kDa)

5.76

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	65 - 260	1.4e-42	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08940 AT5G01530
fragaria_vesca	FvH4_6g11540
malus_domestica	MD04G1151300.v1.1 MD12G1165400.v1.1
prunus_persica	Prupe.6G276200_v2.0.a1
pyrus_communis	pycom04g13720 pycom12g15800
rosa_chinensis	RchiOBHm_Chr3g0463241
rosa_laevigata	RLG00000024798
rosa_multiflora	Rmu_sc0008079.1_g000020
rosa_roxburghii	Rroxscaffold_6G00416760
rosa_rugosa	Rorug03G0062900
rosa_samantha	Rh3AG120900 Rh3BG125400 Rh3CG127400 Rh3DG126600
rosa_wichuraiana	Rw3G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	174
AccB1I	GGYRCC	2 cut(s)	174, 182
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccII	CGCG	1 cut(s)	770
AciI	CCGC	7 cut(s)	6, 15, 18, 674, 686, 770, 779
AclWI	GGATC	4 cut(s)	230, 535, 587, 824
AcoI	YGGCCR	3 cut(s)	3, 258, 315
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	3 cut(s)	183, 354, 365
AfaI	GTAC	4 cut(s)	49, 176, 340, 380
AfiI	CCNNNNNNNGG	4 cut(s)	80, 301, 474, 540
AgsI	TTSAA	2 cut(s)	272, 776
AjiI	CACGTC	2 cut(s)	325, 740
AjnI	CCWGG	1 cut(s)	178
AleI	CACNNNNGTG	2 cut(s)	95, 825
AloI	GAACNNNNNNTCC	2 cut(s)	756, 788
AluBI	AGCT	6 cut(s)	29, 125, 347, 517, 628, 722
AluI	AGCT	6 cut(s)	29, 125, 347, 517, 628, 722
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	4 cut(s)	230, 535, 587, 824
AlwNI	CAGNNNCTG	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	4 cut(s)	3, 164, 258, 315
ApeKI	GCWGC	8 cut(s)	20, 23, 26, 29, 122, 347, 544, 782
Asp718I	GGTACC	1 cut(s)	174
AspLEI	GCGC	3 cut(s)	185, 461, 618
AspS9I	GGNCC	2 cut(s)	160, 797
AsuC2I	CCSGG	4 cut(s)	63, 75, 654, 695
AsuHPI	GGTGA	2 cut(s)	163, 812
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	2 cut(s)	160, 797
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BanI	GGYRCC	2 cut(s)	174, 182
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	8 cut(s)	7, 10, 16, 38, 134, 334, 556, 769
BccI	CCATC	6 cut(s)	47, 78, 200, 518, 742, 854
BceAI	ACGGC	3 cut(s)	80, 352, 361
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	77
BcnI	CCSGG	4 cut(s)	63, 75, 654, 695
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	290, 677
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	2 cut(s)	186, 462
BfuI	GTATCC	1 cut(s)	77
Bme1390I	CCNGG	5 cut(s)	63, 75, 180, 654, 695
Bme18I	GGWCC	2 cut(s)	160, 797
BmeT110I	CYCGRG	1 cut(s)	51
BmgBI	CACGTC	2 cut(s)	325, 740
BmgT120I	GGNCC	2 cut(s)	160, 797
BmiI	GGNNCC	5 cut(s)	60, 176, 184, 211, 334
BmrFI	CCNGG	5 cut(s)	63, 75, 180, 654, 695
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	707
BpuMI	CCSGG	4 cut(s)	63, 75, 654, 695
Bsa29I	ATCGAT	2 cut(s)	282, 852
BsaBI	GATNNNNATC	1 cut(s)	578
BsaHI	GRCGYC	3 cut(s)	183, 354, 365
BsaJI	CCNNGG	4 cut(s)	178, 213, 427, 652
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 301, 474, 540
Bse118I	RCCGGY	3 cut(s)	162, 256, 482
Bse1I	ACTGG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	180
BseCI	ATCGAT	2 cut(s)	282, 852
BseDI	CCNNGG	4 cut(s)	178, 213, 427, 652
BseGI	GGATG	3 cut(s)	11, 70, 423
BseJI	GATNNNNATC	1 cut(s)	578
BseLI	CCNNNNNNNGG	4 cut(s)	80, 301, 474, 540
BseMII	CTCAG	2 cut(s)	714, 838
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	853
BseX3I	CGGCCG	1 cut(s)	258
BseXI	GCAGC	8 cut(s)	7, 10, 16, 38, 134, 334, 556, 769
Bsh1236I	CGCG	1 cut(s)	770
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	5, 166, 260, 317
BshNI	GGYRCC	2 cut(s)	174, 182
BshVI	ATCGAT	2 cut(s)	282, 852
BsiEI	CGRYCG	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	8 cut(s)	63, 75, 163, 257, 318, 483, 654, 695
BsiWI	CGTACG	1 cut(s)	338
BslI	CCNNNNNNNGG	4 cut(s)	80, 301, 474, 540
BsmAI	GTCTC	1 cut(s)	315
BsmBI	CGTCTC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	4 cut(s)	5, 166, 260, 317
BsoBI	CYCGRG	1 cut(s)	51
Bsp143I	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
BspACI	CCGC	7 cut(s)	6, 15, 18, 674, 686, 770, 779
BspANI	GGCC	4 cut(s)	5, 166, 260, 317
BspCNI	CTCAG	2 cut(s)	715, 837
BspDI	ATCGAT	2 cut(s)	282, 852
BspFNI	CGCG	1 cut(s)	770
BspLI	GGNNCC	5 cut(s)	60, 176, 184, 211, 334
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	4 cut(s)	230, 535, 587, 824
BspT107I	GGYRCC	2 cut(s)	174, 182
BsrFI	RCCGGY	3 cut(s)	162, 256, 482
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	3 cut(s)	162, 256, 482
BssECI	CCNNGG	4 cut(s)	178, 213, 427, 652
BssMI	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
BssNI	GRCGYC	3 cut(s)	183, 354, 365
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	4 cut(s)	151, 230, 383, 435
BstACI	GRCGYC	3 cut(s)	183, 354, 365
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstC8I	GCNNGC	3 cut(s)	447, 505, 735
BstDEI	CTNAG	3 cut(s)	306, 723, 824
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	11, 70, 423
BstFNI	CGCG	1 cut(s)	770
BstH2I	RGCGCY	2 cut(s)	186, 462
BstHHI	GCGC	3 cut(s)	185, 461, 618
BstKTI	GATC	8 cut(s)	238, 330, 530, 564, 582, 597, 729, 832
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
BstMCI	CGRYCG	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	5 cut(s)	61, 73, 178, 652, 693
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	8 cut(s)	7, 10, 16, 38, 134, 334, 556, 769
BstV2I	GAAGAC	1 cut(s)	707
BstZI	CGGCCG	1 cut(s)	258
Bsu15I	ATCGAT	2 cut(s)	282, 852
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	4 cut(s)	5, 166, 260, 317
BsuTUI	ATCGAT	2 cut(s)	282, 852
BtgI	CCRYGG	1 cut(s)	427
BtgZI	GCGATG	2 cut(s)	455, 761
BtrI	CACGTC	2 cut(s)	325, 740
BtsCI	GGATG	3 cut(s)	11, 70, 423
BtsIMutI	CAGTG	2 cut(s)	388, 832
Cac8I	GCNNGC	3 cut(s)	447, 505, 735
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	3 cut(s)	185, 461, 618
Cfr10I	RCCGGY	3 cut(s)	162, 256, 482
Cfr13I	GGNCC	2 cut(s)	160, 797
ClaI	ATCGAT	2 cut(s)	282, 852
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	3 cut(s)	362, 373, 509
Csp6I	GTAC	4 cut(s)	48, 175, 339, 379
CspI	CGGWCCG	1 cut(s)	160
CviAII	CATG	3 cut(s)	43, 492, 734
CviQI	GTAC	4 cut(s)	48, 175, 339, 379
DdeI	CTNAG	3 cut(s)	306, 723, 824
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	8 cut(s)	237, 329, 529, 563, 581, 596, 728, 831
DpnII	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
EaeI	YGGCCR	3 cut(s)	3, 258, 315
EagI	CGGCCG	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	4
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	160, 797
Eco52I	CGGCCG	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	3 cut(s)	46, 495, 737
FaiI	YATR	5 cut(s)	44, 493, 577, 649, 735
FatI	CATG	3 cut(s)	42, 491, 733
FauI	CCCGC	1 cut(s)	681
FokI	GGATG	2 cut(s)	57, 410
FspBI	CTAG	2 cut(s)	290, 677
GlaI	GCGC	3 cut(s)	184, 460, 617
HaeII	RGCGCY	2 cut(s)	186, 462
HaeIII	GGCC	4 cut(s)	5, 166, 260, 317
HapII	CCGG	8 cut(s)	63, 75, 163, 257, 318, 483, 654, 695
HgaI	GACGC	3 cut(s)	362, 373, 509
HhaI	GCGC	3 cut(s)	185, 461, 618
Hin1I	GRCGYC	3 cut(s)	183, 354, 365
Hin1II	CATG	3 cut(s)	46, 495, 737
Hin6I	GCGC	3 cut(s)	183, 459, 616
HinP1I	GCGC	3 cut(s)	183, 459, 616
HinfI	GANTC	6 cut(s)	284, 298, 396, 405, 632, 765
HpaII	CCGG	8 cut(s)	63, 75, 163, 257, 318, 483, 654, 695
HphI	GGTGA	2 cut(s)	163, 812
Hpy166II	GTNNAC	2 cut(s)	90, 800
Hpy188I	TCNGA	4 cut(s)	110, 332, 395, 637
Hpy188III	TCNNGA	4 cut(s)	194, 400, 559, 565
Hpy8I	GTNNAC	2 cut(s)	90, 800
Hpy99I	CGWCG	3 cut(s)	356, 367, 473
HpyAV	CCTTC	4 cut(s)	112, 250, 766, 868
HpyCH4III	ACNGT	4 cut(s)	151, 230, 383, 435
HpyCH4IV	ACGT	2 cut(s)	324, 739
HpyCH4V	TGCA	3 cut(s)	26, 737, 785
HpyF3I	CTNAG	3 cut(s)	306, 723, 824
HpySE526I	ACGT	2 cut(s)	324, 739
Hsp92I	GRCGYC	3 cut(s)	183, 354, 365
Hsp92II	CATG	3 cut(s)	46, 495, 737
HspAI	GCGC	3 cut(s)	183, 459, 616
KasI	GGCGCC	1 cut(s)	182
KpnI	GGTACC	1 cut(s)	178
Kzo9I	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
LmnI	GCTCC	3 cut(s)	64, 130, 514
Lsp1109I	GCAGC	8 cut(s)	7, 10, 16, 38, 134, 334, 556, 769
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	2 cut(s)	290, 677
MaeII	ACGT	2 cut(s)	324, 739
MaeIII	GTNAC	2 cut(s)	151, 487
MalI	GATC	8 cut(s)	237, 329, 529, 563, 581, 596, 728, 831
MboI	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
MboII	GAAGA	4 cut(s)	27, 127, 260, 712
MfeI	CAATTG	1 cut(s)	808
MluCI	AATT	2 cut(s)	272, 808
Mly113I	GGCGCC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	177, 379, 577, 650, 833
MseI	TTAA	1 cut(s)	871
MslI	CAYNNNNRTG	3 cut(s)	95, 574, 825
MspA1I	CMGCKG	2 cut(s)	20, 29
MspI	CCGG	8 cut(s)	63, 75, 163, 257, 318, 483, 654, 695
MspR9I	CCNGG	5 cut(s)	63, 75, 180, 654, 695
MunI	CAATTG	1 cut(s)	808
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	770
NarI	GGCGCC	1 cut(s)	183
NciI	CCSGG	4 cut(s)	63, 75, 654, 695
NdeII	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
NlaIII	CATG	3 cut(s)	46, 495, 737
NlaIV	GGNNCC	5 cut(s)	60, 176, 184, 211, 334
NmeAIII	GCCGAG	3 cut(s)	286, 435, 649
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	737
OliI	CACNNNNGTG	2 cut(s)	95, 825
PaeI	GCATGC	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PctI	GAATGC	1 cut(s)	419
PfeI	GAWTC	6 cut(s)	284, 298, 396, 405, 632, 765
Pfl23II	CGTACG	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspLI	CGTACG	1 cut(s)	338
PspN4I	GGNNCC	5 cut(s)	60, 176, 184, 211, 334
PspPI	GGNCC	2 cut(s)	160, 797
PstI	CTGCAG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	4 cut(s)	49, 176, 340, 380
RsaNI	GTAC	4 cut(s)	48, 175, 339, 379
RseI	CAYNNNNRTG	3 cut(s)	95, 574, 825
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	871
Sau3AI	GATC	8 cut(s)	235, 327, 527, 561, 579, 594, 726, 829
Sau96I	GGNCC	2 cut(s)	160, 797
ScrFI	CCNGG	5 cut(s)	63, 75, 180, 654, 695
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	184
SinI	GGWCC	2 cut(s)	160, 797
SmiMI	CAYNNNNRTG	3 cut(s)	95, 574, 825
SphI	GCATGC	1 cut(s)	737
Sse9I	AATT	2 cut(s)	272, 808
SsiI	CCGC	7 cut(s)	6, 15, 18, 674, 686, 770, 779
SspDI	GGCGCC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	290, 677
StyD4I	CCNGG	5 cut(s)	61, 73, 178, 652, 693
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	4 cut(s)	151, 230, 383, 435
TaiI	ACGT	2 cut(s)	327, 742
TaqI	TCGA	9 cut(s)	276, 282, 362, 471, 560, 566, 582, 606, 852
TasI	AATT	2 cut(s)	272, 808
TauI	GCSGC	4 cut(s)	8, 20, 689, 782
TfiI	GAWTC	6 cut(s)	284, 298, 396, 405, 632, 765
Tru1I	TTAA	1 cut(s)	871
Tru9I	TTAA	1 cut(s)	871
TscAI	CASTG	2 cut(s)	388, 832
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	8 cut(s)	20, 23, 26, 29, 122, 347, 544, 782
Tsp45I	GTSAC	1 cut(s)	151
TspGWI	ACGGA	4 cut(s)	173, 356, 444, 457
TspRI	CASTG	2 cut(s)	388, 832
Van91I	CCANNNNNTGG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	160, 797
XceI	RCATGY	1 cut(s)	737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	807
XspI	CTAG	2 cut(s)	290, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.