MD04G1151300.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012889
Physical Location & Seq
Reverse (-)
23988140 .. 23989799
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1151300.v1.1.491

Sequence Viewer

Length: 861 bp
ATGGCAACAACCGCAGCTGCTGCCGCCGCTGCATCCTCATTCATCGGGACACGCCTTCCGACCGACGCCTACTCGAACTCGGGACGGGTCCAGGCCCGTTTCGGATTCGGCACCAAAAAGCCCAAGAAAACAAAACCCACTTTCACAACAGACCGCCCGCTCTGGTACCCGGGCGCCAAGGCTCCTGAATGGCTGGACGGGAGCTTGGTGGGCGACTACGGGTTCGACCCGTTCGGTTTGGGCAAACCCGCGGAGTATTTGCAGTACGACTACGACGGGTTGGACCAGAATTTGGCCAAGAACTTGGCGGGTGACATTATTGGGACCCGAACCGAAACCGCGGACGTCCAGTCGACGCCGTTTCAGCCTTACTCGGAGGTGTTTGGGCTGCAGAGGTTTAGGGAGTGCGAGCTGATTCATGGAAGGTGGGCCATGCTCGCCACGCTCGGTGCTCTCACTGTCGAGTCCGTCACCGGGATCACATGGCAAGACGCCGGAAAGGTGGAGCTCATCGAAGGGTCGTCCTACTTGGGTCAACCACTCCCTTTCTCACTAACCACGTTGATCTGGATCGAAGTTCTAGTGATTGGCTACATCGAGTTCCAGAGGAACGCCGAGCTCGACCCGGAAAAGAGGTTGTACCCGGGTGGCAAGTTCTTCGACCCGTTGGGCCTTGCTGCTGACCCGGAAAAGAAGGCCACTCTTCAGCTGGCCGAAATCAAGCACGCCCGCCTCGCCATGGTTGCGTTTCTGGGGTTTGCCGTGCAAGCCGCCGTCACCGGGAAGGGACCACTTAACAACTGGGCTACCCATTTGAGTGACCCGCTCCACACCACCATTATTGACGCCTTCTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

287

Amino Acids

31.13

Weight (kDa)

5.46

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 61 - 257 3.5e-43 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08940 AT5G01530
fragaria_vesca FvH4_6g11540
malus_domestica MD04G1151300.v1.1 MD12G1165400.v1.1
prunus_persica Prupe.6G276200_v2.0.a1
pyrus_communis pycom04g13720 pycom12g15800
rosa_chinensis RchiOBHm_Chr3g0463241
rosa_laevigata RLG00000024798
rosa_multiflora Rmu_sc0008079.1_g000020
rosa_roxburghii Rroxscaffold_6G00416760
rosa_rugosa Rorug03G0062900
rosa_samantha Rh3AG120900 Rh3BG125400 Rh3CG127400 Rh3DG126600
rosa_wichuraiana Rw3G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 3 cut(s) 110, 165, 173
AccB7I CCANNNNNTGG 1 cut(s) 292
AccBSI CCGCTC 2 cut(s) 160, 826
AccI GTMKAC 1 cut(s) 353
AccII CGCG 2 cut(s) 251, 341
AclWI GGATC 2 cut(s) 485, 578
AcoI YGGCCR 2 cut(s) 294, 711
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 689
AcyI GRCGYC 6 cut(s) 66, 174, 345, 356, 492, 846
AfaI GTAC 3 cut(s) 167, 266, 641
AfiI CCNNNNNNNGG 4 cut(s) 292, 474, 739, 780
AhdI GACNNNNNGTC 1 cut(s) 349
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 6 cut(s) 17, 204, 412, 508, 619, 709
AluI AGCT 6 cut(s) 17, 204, 412, 508, 619, 709
Alw21I GWGCWC 3 cut(s) 454, 510, 621
AlwI GGATC 2 cut(s) 485, 578
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 3 cut(s) 79, 169, 643
AoxI GGCC 6 cut(s) 93, 294, 429, 670, 696, 711
ApeKI GCWGC 6 cut(s) 14, 17, 20, 29, 388, 677
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
Asp718I GGTACC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 7 cut(s) 88, 94, 283, 324, 429, 670, 788
AsuC2I CCSGG 8 cut(s) 170, 171, 475, 626, 644, 645, 686, 781
AsuHPI GGTGA 3 cut(s) 323, 463, 769
AvaI CYCGRG 3 cut(s) 79, 169, 643
AvaII GGWCC 4 cut(s) 88, 283, 324, 788
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 3 cut(s) 110, 165, 173
BanII GRGCYC 2 cut(s) 510, 621
Bbv12I GWGCWC 3 cut(s) 454, 510, 621
BbvI GCAGC 6 cut(s) 4, 7, 16, 26, 375, 664
BceAI ACGGC 3 cut(s) 343, 746, 758
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BciT130I CCWGG 1 cut(s) 92
BcnI CCSGG 8 cut(s) 170, 171, 475, 626, 644, 645, 686, 781
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 389
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 9 cut(s) 15, 18, 21, 24, 27, 30, 389, 678, 771
BlsI GCNGC 9 cut(s) 16, 19, 22, 25, 28, 31, 390, 679, 772
Bme1390I CCNGG 9 cut(s) 92, 170, 171, 475, 626, 644, 645, 686, 781
Bme18I GGWCC 4 cut(s) 88, 283, 324, 788
BmeRI GACNNNNNGTC 1 cut(s) 349
BmeT110I CYCGRG 3 cut(s) 79, 169, 643
BmgT120I GGNCC 7 cut(s) 88, 94, 283, 324, 429, 670, 788
BmiI GGNNCC 8 cut(s) 89, 112, 167, 175, 183, 325, 326, 789
BmrFI CCNGG 9 cut(s) 92, 170, 171, 475, 626, 644, 645, 686, 781
BmrI ACTGGG 1 cut(s) 811
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 811
BpuMI CCSGG 8 cut(s) 170, 171, 475, 626, 644, 645, 686, 781
BsaBI GATNNNNATC 1 cut(s) 569
BsaHI GRCGYC 6 cut(s) 66, 174, 345, 356, 492, 846
BsaJI CCNNGG 6 cut(s) 169, 177, 249, 339, 643, 738
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 474, 739, 780
Bse1I ACTGG 2 cut(s) 349, 806
Bse8I GATNNNNATC 1 cut(s) 569
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 6 cut(s) 169, 177, 249, 339, 643, 738
BseGI GGATG 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 569
BseLI CCNNNNNNNGG 4 cut(s) 292, 474, 739, 780
BseNI ACTGG 2 cut(s) 349, 806
BseXI GCAGC 6 cut(s) 4, 7, 16, 26, 375, 664
Bsh1236I CGCG 2 cut(s) 251, 341
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 6 cut(s) 95, 296, 431, 672, 698, 713
BshNI GGYRCC 3 cut(s) 110, 165, 173
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 3 cut(s) 454, 510, 621
BsiHKCI CYCGRG 3 cut(s) 79, 169, 643
BsiSI CCGG 7 cut(s) 170, 474, 495, 626, 644, 686, 780
BslFI GGGAC 4 cut(s) 61, 96, 337, 801
BslI CCNNNNNNNGG 4 cut(s) 292, 474, 739, 780
BsmFI GGGAC 4 cut(s) 61, 96, 337, 801
BsnI GGCC 6 cut(s) 95, 296, 431, 672, 698, 713
BsoBI CYCGRG 3 cut(s) 79, 169, 643
Bsp1286I GDGCHC 3 cut(s) 454, 510, 621
Bsp143I GATC 3 cut(s) 477, 564, 570
Bsp19I CCATGG 1 cut(s) 738
BspANI GGCC 6 cut(s) 95, 296, 431, 672, 698, 713
BspFNI CGCG 2 cut(s) 251, 341
BspLI GGNNCC 8 cut(s) 89, 112, 167, 175, 183, 325, 326, 789
BspMAI CTGCAG 1 cut(s) 393
BspPI GGATC 2 cut(s) 485, 578
BspT107I GGYRCC 3 cut(s) 110, 165, 173
BsrBI CCGCTC 2 cut(s) 160, 826
BsrI ACTGG 2 cut(s) 349, 806
BssECI CCNNGG 6 cut(s) 169, 177, 249, 339, 643, 738
BssMI GATC 3 cut(s) 477, 564, 570
BssNI GRCGYC 6 cut(s) 66, 174, 345, 356, 492, 846
BssT1I CCWWGG 2 cut(s) 177, 738
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 708
BstACI GRCGYC 6 cut(s) 66, 174, 345, 356, 492, 846
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 7 cut(s) 158, 410, 438, 711, 726, 730, 768
BstDEI CTNAG 1 cut(s) 858
BstDSI CCRYGG 3 cut(s) 249, 339, 738
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 2 cut(s) 251, 341
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 3 cut(s) 480, 567, 573
BstMBI GATC 3 cut(s) 477, 564, 570
BstMCI CGRYCG 1 cut(s) 63
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 9 cut(s) 90, 168, 169, 473, 624, 642, 643, 684, 779
BstSFI CTRYAG 1 cut(s) 389
BstUI CGCG 2 cut(s) 251, 341
BstV1I GCAGC 6 cut(s) 4, 7, 16, 26, 375, 664
BstXI CCANNNNNNTGG 1 cut(s) 304
BsuRI GGCC 6 cut(s) 95, 296, 431, 672, 698, 713
BtgI CCRYGG 3 cut(s) 249, 339, 738
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 7 cut(s) 158, 410, 438, 711, 726, 730, 768
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 7 cut(s) 88, 94, 283, 324, 429, 670, 788
Cfr42I CCGCGG 2 cut(s) 252, 342
Cfr9I CCCGGG 2 cut(s) 169, 643
CseI GACGC 4 cut(s) 74, 364, 500, 854
Csp6I GTAC 3 cut(s) 166, 265, 640
CspCI CAANNNNNGTGG 2 cut(s) 823, 858
CviAII CATG 4 cut(s) 419, 433, 483, 739
CviQI GTAC 3 cut(s) 166, 265, 640
DdeI CTNAG 1 cut(s) 858
DinI GGCGCC 1 cut(s) 175
DpnI GATC 3 cut(s) 479, 566, 572
DpnII GATC 3 cut(s) 477, 564, 570
DriI GACNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 2 cut(s) 294, 711
Eam1104I CTCTTC 1 cut(s) 708
Eam1105I GACNNNNNGTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 708
Ecl136II GAGCTC 2 cut(s) 508, 619
Eco130I CCWWGG 2 cut(s) 177, 738
Eco24I GRGCYC 2 cut(s) 510, 621
Eco47I GGWCC 4 cut(s) 88, 283, 324, 788
Eco53kI GAGCTC 2 cut(s) 508, 619
Eco57I CTGAAG 1 cut(s) 689
Eco88I CYCGRG 3 cut(s) 79, 169, 643
EcoICRI GAGCTC 2 cut(s) 508, 619
EcoO109I RGGNCCY 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 177, 738
EcoT38I GRGCYC 2 cut(s) 510, 621
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
ErhI CCWWGG 2 cut(s) 177, 738
FaeI CATG 4 cut(s) 422, 436, 486, 742
FaiI YATR 4 cut(s) 420, 434, 484, 740
FaqI GGGAC 4 cut(s) 61, 96, 337, 801
FatI CATG 4 cut(s) 418, 432, 482, 738
FauI CCCGC 5 cut(s) 165, 256, 301, 737, 831
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 9 cut(s) 15, 18, 21, 24, 27, 30, 389, 678, 771
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 2 cut(s) 510, 621
Fsp4HI GCNGC 9 cut(s) 15, 18, 21, 24, 27, 30, 389, 678, 771
FspBI CTAG 1 cut(s) 581
GlaI GCGC 1 cut(s) 175
GluI GCNGC 9 cut(s) 15, 18, 21, 24, 27, 30, 389, 678, 771
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 6 cut(s) 95, 296, 431, 672, 698, 713
HapII CCGG 7 cut(s) 170, 474, 495, 626, 644, 686, 780
HgaI GACGC 4 cut(s) 74, 364, 500, 854
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 6 cut(s) 66, 174, 345, 356, 492, 846
Hin1II CATG 4 cut(s) 422, 436, 486, 742
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 2 cut(s) 354, 536
HindII GTYRAC 2 cut(s) 354, 536
HinfI GANTC 3 cut(s) 105, 415, 464
HpaII CCGG 7 cut(s) 170, 474, 495, 626, 644, 686, 780
HphI GGTGA 3 cut(s) 323, 463, 769
Hpy166II GTNNAC 2 cut(s) 354, 536
Hpy188I TCNGA 3 cut(s) 60, 104, 376
Hpy188III TCNNGA 5 cut(s) 46, 81, 185, 568, 604
Hpy8I GTNNAC 2 cut(s) 354, 536
Hpy99I CGWCG 3 cut(s) 68, 278, 358
HpyAV CCTTC 6 cut(s) 65, 417, 509, 688, 778, 859
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 2 cut(s) 345, 560
HpyCH4V TGCA 4 cut(s) 32, 262, 391, 766
HpyF3I CTNAG 1 cut(s) 858
HpySE526I ACGT 2 cut(s) 345, 560
Hsp92I GRCGYC 6 cut(s) 66, 174, 345, 356, 492, 846
Hsp92II CATG 4 cut(s) 422, 436, 486, 742
HspAI GCGC 1 cut(s) 174
KasI GGCGCC 1 cut(s) 173
KflI GGGWCCC 1 cut(s) 324
KpnI GGTACC 1 cut(s) 169
KspI CCGCGG 2 cut(s) 252, 342
Kzo9I GATC 3 cut(s) 477, 564, 570
LmnI GCTCC 4 cut(s) 187, 201, 505, 831
Lsp1109I GCAGC 6 cut(s) 4, 7, 16, 26, 375, 664
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 345, 560
MaeIII GTNAC 4 cut(s) 311, 469, 775, 818
MalI GATC 3 cut(s) 479, 566, 572
MbiI CCGCTC 2 cut(s) 160, 826
MboI GATC 3 cut(s) 477, 564, 570
MboII GAAGA 3 cut(s) 649, 695, 846
MhlI GDGCHC 3 cut(s) 454, 510, 621
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 1 cut(s) 289
MluNI TGGCCA 1 cut(s) 296
Mly113I GGCGCC 1 cut(s) 174
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 83, 261
MnlI CCTC 6 cut(s) 46, 370, 387, 600, 627, 743
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 816
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 5 cut(s) 17, 29, 251, 341, 709
MspI CCGG 7 cut(s) 170, 474, 495, 626, 644, 686, 780
MspR9I CCNGG 9 cut(s) 92, 170, 171, 475, 626, 644, 645, 686, 781
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 2 cut(s) 251, 341
NarI GGCGCC 1 cut(s) 174
NciI CCSGG 8 cut(s) 170, 171, 475, 626, 644, 645, 686, 781
NcoI CCATGG 1 cut(s) 738
NdeII GATC 3 cut(s) 477, 564, 570
NlaIII CATG 4 cut(s) 422, 436, 486, 742
NlaIV GGNNCC 8 cut(s) 89, 112, 167, 175, 183, 325, 326, 789
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 4 cut(s) 311, 469, 775, 818
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PfeI GAWTC 2 cut(s) 105, 415
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 9 cut(s) 16, 19, 22, 25, 28, 31, 390, 679, 772
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 324
Psp124BI GAGCTC 2 cut(s) 510, 621
Psp5II RGGWCCY 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 8 cut(s) 89, 112, 167, 175, 183, 325, 326, 789
PspPI GGNCC 7 cut(s) 88, 94, 283, 324, 429, 670, 788
PspPPI RGGWCCY 1 cut(s) 324
PstI CTGCAG 1 cut(s) 393
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 2 cut(s) 17, 709
RsaI GTAC 3 cut(s) 167, 266, 641
RsaNI GTAC 3 cut(s) 166, 265, 640
RseI CAYNNNNRTG 1 cut(s) 816
SacI GAGCTC 2 cut(s) 510, 621
SacII CCGCGG 2 cut(s) 252, 342
SalI GTCGAC 1 cut(s) 352
SaqAI TTAA 1 cut(s) 795
SatI GCNGC 9 cut(s) 15, 18, 21, 24, 27, 30, 389, 678, 771
Sau3AI GATC 3 cut(s) 477, 564, 570
Sau96I GGNCC 7 cut(s) 88, 94, 283, 324, 429, 670, 788
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 9 cut(s) 92, 170, 171, 475, 626, 644, 645, 686, 781
SduI GDGCHC 3 cut(s) 454, 510, 621
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 389
SfoI GGCGCC 1 cut(s) 175
Sfr303I CCGCGG 2 cut(s) 252, 342
SgrBI CCGCGG 2 cut(s) 252, 342
SinI GGWCC 4 cut(s) 88, 283, 324, 788
SmaI CCCGGG 2 cut(s) 171, 645
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 1 cut(s) 289
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 2 cut(s) 510, 621
StyD4I CCNGG 9 cut(s) 90, 168, 169, 473, 624, 642, 643, 684, 779
StyI CCWWGG 2 cut(s) 177, 738
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 2 cut(s) 348, 563
TaqI TCGA 9 cut(s) 74, 225, 353, 462, 513, 573, 597, 621, 660
TaqII GACCGA 1 cut(s) 77
TasI AATT 1 cut(s) 289
TauI GCSGC 3 cut(s) 26, 29, 773
TfiI GAWTC 2 cut(s) 105, 415
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 4 cut(s) 311, 469, 775, 818
TseI GCWGC 6 cut(s) 14, 17, 20, 29, 388, 677
Tsp45I GTSAC 4 cut(s) 311, 469, 775, 818
TspDTI ATGAA 2 cut(s) 31, 407
TspGWI ACGGA 1 cut(s) 457
TspMI CCCGGG 2 cut(s) 169, 643
TspRI CASTG 1 cut(s) 463
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 4 cut(s) 88, 283, 324, 788
XapI RAATTY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 2 cut(s) 706, 798
XmaI CCCGGG 2 cut(s) 169, 643
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 1 cut(s) 581
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.