MD12G1165400.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0012889
Physical Location & Seq
Reverse (-)
24641675 .. 24644144
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1165400.v1.1.491

Sequence Viewer

Length: 873 bp
ATGGCAACAACCACAGCTGCTGCCGCCGCTACATCCTCCTTCATCGGGACACGCCTCCCGTCTGAGGCGTACTCGAACTCGGGTCGGGTTCAGGGCCGGTTCGGATTCGGGACCAAGAAAAGGCCGCCCAAGAAATCAACAAAACCCACTTTCTCGACTGACCGCCCGCTCTGGTACCCGGGCGCAAAGGCTCCGGAGTGGCTGGACGGGACCCTGGTGGGCGACTACGGGTTCGACCCGTTCGGTTTGGGCAAACCCGCGGAGTATTTGCAGTACGACTACGACGGGTTGGACCAAAACTTGGCCAAGAACTTGGCGGGTGACATCATCGGGACTCGAACCGAAACCGCGGACGTCCAGTCGACGCCGTTTCAGCCTTACACGGAGGTGTTTGGGTTGCAGAGGTTTAGGGAGTGCGAGCTGATTCATGGAAGGTGGGCCATGCTCGCCACGCTCGGTGCTCTCACTGTTGAGTCCCTAACCGGGATCACATGGCAAGACGCCGAAAGGTACGTGGAGCTCATCGAAGGTTCATCCTACTTGGGTCAGCCACTCCCGTTCTCACTAACCACATTGATCTGGATCGAAGTTCTAGTGATTGGCTACATCGAGTTCCAGAGGAACGCCGAGCTCGACCCGGAAAAGAGGTTGTACCCGGGTGGCAAGTTCTTCGACCCCTTGGGCCTTGCCGCCGACCCAGAAAAGAAGGCCACGCTTCAACTGGCTGAAATCAAGCACGCCCGCCTCGCCATGGTTGGGTTCCTCGGGTTCGCCGTGCAGGCCGCCGTGACCGGAAAGGGCCCGCTTAACAACTGGGCTACCCATTTGAGTGACCCGCTCCACACTACCATCATCGACGCCTTCTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

291

Amino Acids

31.79

Weight (kDa)

5.48

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 64 - 261 1e-42 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08940 AT5G01530
fragaria_vesca FvH4_6g11540
malus_domestica MD04G1151300.v1.1 MD12G1165400.v1.1
prunus_persica Prupe.6G276200_v2.0.a1
pyrus_communis pycom04g13720 pycom12g15800
rosa_chinensis RchiOBHm_Chr3g0463241
rosa_laevigata RLG00000024798
rosa_multiflora Rmu_sc0008079.1_g000020
rosa_roxburghii Rroxscaffold_6G00416760
rosa_rugosa Rorug03G0062900
rosa_samantha Rh3AG120900 Rh3BG125400 Rh3CG127400 Rh3DG126600
rosa_wichuraiana Rw3G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
Acc65I GGTACC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 174
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 2 cut(s) 169, 838
AccI GTMKAC 1 cut(s) 362
AccII CGCG 2 cut(s) 260, 350
AccIII TCCGGA 1 cut(s) 193
AclWI GGATC 2 cut(s) 494, 590
AcoI YGGCCR 1 cut(s) 303
AcyI GRCGYC 4 cut(s) 354, 365, 501, 858
AfaI GTAC 5 cut(s) 71, 176, 275, 512, 653
AfiI CCNNNNNNNGG 7 cut(s) 45, 64, 120, 301, 483, 751, 756
AgsI TTSAA 1 cut(s) 719
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 1 cut(s) 213
AleI CACNNNNGTG 1 cut(s) 386
AluBI AGCT 4 cut(s) 17, 421, 520, 631
AluI AGCT 4 cut(s) 17, 421, 520, 631
Alw21I GWGCWC 3 cut(s) 463, 522, 633
AlwI GGATC 2 cut(s) 494, 590
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 4 cut(s) 79, 178, 655, 764
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 8 cut(s) 94, 122, 303, 438, 682, 708, 780, 799
ApaI GGGCCC 1 cut(s) 803
ApeKI GCWGC 2 cut(s) 17, 20
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
Asp718I GGTACC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 8 cut(s) 94, 111, 210, 292, 438, 682, 799, 800
AsuC2I CCSGG 6 cut(s) 179, 180, 484, 638, 656, 657
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 4 cut(s) 79, 178, 655, 764
AvaII GGWCC 3 cut(s) 111, 210, 292
BaeGI GKGCMC 1 cut(s) 803
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 174
BanII GRGCYC 3 cut(s) 522, 633, 803
Bbv12I GWGCWC 3 cut(s) 463, 522, 633
BbvI GCAGC 2 cut(s) 4, 7
BccI CCATC 1 cut(s) 857
BceAI ACGGC 3 cut(s) 352, 758, 770
BcgI CGANNNNNNTGC 2 cut(s) 652, 686
BciT130I CCWGG 1 cut(s) 215
BcnI CCSGG 6 cut(s) 179, 180, 484, 638, 656, 657
BfaI CTAG 1 cut(s) 593
BglI GCCNNNNNGGC 1 cut(s) 779
BisI GCNGC 7 cut(s) 18, 21, 24, 27, 125, 690, 783
BlsI GCNGC 7 cut(s) 19, 22, 25, 28, 126, 691, 784
Bme1390I CCNGG 7 cut(s) 179, 180, 215, 484, 638, 656, 657
Bme18I GGWCC 3 cut(s) 111, 210, 292
BmeRI GACNNNNNGTC 1 cut(s) 358
BmeT110I CYCGRG 4 cut(s) 79, 178, 655, 764
BmgT120I GGNCC 8 cut(s) 94, 111, 210, 292, 438, 682, 799, 800
BmiI GGNNCC 7 cut(s) 112, 176, 192, 211, 212, 761, 801
BmrFI CCNGG 7 cut(s) 179, 180, 215, 484, 638, 656, 657
BmrI ACTGGG 1 cut(s) 823
BmuI ACTGGG 1 cut(s) 823
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpuMI CCSGG 6 cut(s) 179, 180, 484, 638, 656, 657
BsaAI YACGTR 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 581
BsaHI GRCGYC 4 cut(s) 354, 365, 501, 858
BsaJI CCNNGG 8 cut(s) 178, 213, 258, 348, 655, 678, 750, 763
BsaWI WCCGGW 2 cut(s) 193, 791
Bsc4I CCNNNNNNNGG 7 cut(s) 45, 64, 120, 301, 483, 751, 756
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 3 cut(s) 358, 726, 818
Bse8I GATNNNNATC 1 cut(s) 581
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 8 cut(s) 178, 213, 258, 348, 655, 678, 750, 763
BseGI GGATG 2 cut(s) 32, 533
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 7 cut(s) 45, 64, 120, 301, 483, 751, 756
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 358, 726, 818
BseSI GKGCMC 1 cut(s) 803
BseXI GCAGC 2 cut(s) 4, 7
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 2 cut(s) 260, 350
BshFI GGCC 8 cut(s) 96, 124, 305, 440, 684, 710, 782, 801
BshNI GGYRCC 1 cut(s) 174
BsiHKAI GWGCWC 3 cut(s) 463, 522, 633
BsiHKCI CYCGRG 4 cut(s) 79, 178, 655, 764
BsiSI CCGG 7 cut(s) 97, 179, 194, 483, 638, 656, 792
BslFI GGGAC 5 cut(s) 61, 124, 223, 346, 460
BslI CCNNNNNNNGG 7 cut(s) 45, 64, 120, 301, 483, 751, 756
BsmFI GGGAC 5 cut(s) 61, 124, 223, 346, 460
BsnI GGCC 8 cut(s) 96, 124, 305, 440, 684, 710, 782, 801
BsoBI CYCGRG 4 cut(s) 79, 178, 655, 764
Bsp120I GGGCCC 1 cut(s) 799
Bsp1286I GDGCHC 4 cut(s) 463, 522, 633, 803
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 3 cut(s) 486, 576, 582
Bsp19I CCATGG 1 cut(s) 750
BspANI GGCC 8 cut(s) 96, 124, 305, 440, 684, 710, 782, 801
BspCNI CTCAG 1 cut(s) 55
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 2 cut(s) 260, 350
BspLI GGNNCC 7 cut(s) 112, 176, 192, 211, 212, 761, 801
BspPI GGATC 2 cut(s) 494, 590
BspT107I GGYRCC 1 cut(s) 174
BsrBI CCGCTC 2 cut(s) 169, 838
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 3 cut(s) 358, 726, 818
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 8 cut(s) 178, 213, 258, 348, 655, 678, 750, 763
BssMI GATC 3 cut(s) 486, 576, 582
BssNI GRCGYC 4 cut(s) 354, 365, 501, 858
BssT1I CCWWGG 2 cut(s) 678, 750
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 469
BstACI GRCGYC 4 cut(s) 354, 365, 501, 858
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 7 cut(s) 167, 419, 447, 738, 742, 780, 803
BstDEI CTNAG 2 cut(s) 63, 870
BstDSI CCRYGG 3 cut(s) 258, 348, 750
BstF5I GGATG 2 cut(s) 32, 533
BstFNI CGCG 2 cut(s) 260, 350
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 3 cut(s) 489, 579, 585
BstMBI GATC 3 cut(s) 486, 576, 582
BstMWI GCNNNNNNNGC 7 cut(s) 23, 26, 373, 446, 451, 746, 779
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 7 cut(s) 177, 178, 213, 482, 636, 654, 655
BstSLI GKGCMC 1 cut(s) 803
BstUI CGCG 2 cut(s) 260, 350
BstV1I GCAGC 2 cut(s) 4, 7
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 8 cut(s) 96, 124, 305, 440, 684, 710, 782, 801
BtgI CCRYGG 3 cut(s) 258, 348, 750
BtsCI GGATG 2 cut(s) 32, 533
BtsIMutI CAGTG 1 cut(s) 465
Cac8I GCNNGC 7 cut(s) 167, 419, 447, 738, 742, 780, 803
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 8 cut(s) 94, 111, 210, 292, 438, 682, 799, 800
Cfr42I CCGCGG 2 cut(s) 261, 351
Cfr9I CCCGGG 2 cut(s) 178, 655
CseI GACGC 3 cut(s) 373, 509, 866
Csp6I GTAC 5 cut(s) 70, 175, 274, 511, 652
CviAII CATG 4 cut(s) 428, 442, 492, 751
CviQI GTAC 5 cut(s) 70, 175, 274, 511, 652
DdeI CTNAG 2 cut(s) 63, 870
DpnI GATC 3 cut(s) 488, 578, 584
DpnII GATC 3 cut(s) 486, 576, 582
DriI GACNNNNNGTC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 358
Ecl136II GAGCTC 2 cut(s) 520, 631
Eco130I CCWWGG 2 cut(s) 678, 750
Eco24I GRGCYC 3 cut(s) 522, 633, 803
Eco47I GGWCC 3 cut(s) 111, 210, 292
Eco53kI GAGCTC 2 cut(s) 520, 631
Eco88I CYCGRG 4 cut(s) 79, 178, 655, 764
EcoICRI GAGCTC 2 cut(s) 520, 631
EcoO109I RGGNCCY 2 cut(s) 210, 799
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 678, 750
EcoT38I GRGCYC 3 cut(s) 522, 633, 803
ErhI CCWWGG 2 cut(s) 678, 750
FaeI CATG 4 cut(s) 431, 445, 495, 754
FaiI YATR 4 cut(s) 429, 443, 493, 752
FaqI GGGAC 5 cut(s) 61, 124, 223, 346, 460
FatI CATG 4 cut(s) 427, 441, 491, 750
FauI CCCGC 6 cut(s) 174, 265, 310, 749, 810, 843
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 7 cut(s) 18, 21, 24, 27, 125, 690, 783
FokI GGATG 2 cut(s) 19, 520
FriOI GRGCYC 3 cut(s) 522, 633, 803
Fsp4HI GCNGC 7 cut(s) 18, 21, 24, 27, 125, 690, 783
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 184
GluI GCNGC 7 cut(s) 18, 21, 24, 27, 125, 690, 783
HaeIII GGCC 8 cut(s) 96, 124, 305, 440, 684, 710, 782, 801
HapII CCGG 7 cut(s) 97, 179, 194, 483, 638, 656, 792
HgaI GACGC 3 cut(s) 373, 509, 866
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 4 cut(s) 354, 365, 501, 858
Hin1II CATG 4 cut(s) 431, 445, 495, 754
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 4 cut(s) 105, 334, 424, 473
HpaII CCGG 7 cut(s) 97, 179, 194, 483, 638, 656, 792
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 2 cut(s) 64, 104
Hpy188III TCNNGA 7 cut(s) 46, 109, 154, 194, 331, 580, 616
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 3 cut(s) 287, 367, 860
HpyAV CCTTC 5 cut(s) 49, 426, 521, 700, 871
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 2 cut(s) 354, 513
HpyCH4V TGCA 3 cut(s) 271, 400, 778
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 26, 373, 446, 451, 746, 779
HpyF3I CTNAG 2 cut(s) 63, 870
HpySE526I ACGT 2 cut(s) 354, 513
Hsp92I GRCGYC 4 cut(s) 354, 365, 501, 858
Hsp92II CATG 4 cut(s) 431, 445, 495, 754
HspAI GCGC 1 cut(s) 183
KflI GGGWCCC 1 cut(s) 210
Kpn2I TCCGGA 1 cut(s) 193
KpnI GGTACC 1 cut(s) 178
KspI CCGCGG 2 cut(s) 261, 351
Kzo9I GATC 3 cut(s) 486, 576, 582
LmnI GCTCC 3 cut(s) 196, 517, 843
Lsp1109I GCAGC 2 cut(s) 4, 7
MaeI CTAG 1 cut(s) 593
MaeII ACGT 2 cut(s) 354, 513
MaeIII GTNAC 3 cut(s) 320, 787, 830
MalI GATC 3 cut(s) 488, 578, 584
MbiI CCGCTC 2 cut(s) 169, 838
MboI GATC 3 cut(s) 486, 576, 582
MboII GAAGA 2 cut(s) 661, 858
MhlI GDGCHC 4 cut(s) 463, 522, 633, 803
MlsI TGGCCA 1 cut(s) 305
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 2 cut(s) 328, 482
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 9 cut(s) 46, 58, 65, 379, 396, 612, 639, 755, 773
Mox20I TGGCCA 1 cut(s) 305
MroI TCCGGA 1 cut(s) 193
MscI TGGCCA 1 cut(s) 305
MseI TTAA 1 cut(s) 807
MslI CAYNNNNRTG 2 cut(s) 386, 828
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 3 cut(s) 17, 260, 350
MspI CCGG 7 cut(s) 97, 179, 194, 483, 638, 656, 792
MspR9I CCNGG 7 cut(s) 179, 180, 215, 484, 638, 656, 657
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 2 cut(s) 260, 350
MwoI GCNNNNNNNGC 7 cut(s) 23, 26, 373, 446, 451, 746, 779
NciI CCSGG 6 cut(s) 179, 180, 484, 638, 656, 657
NcoI CCATGG 1 cut(s) 750
NdeII GATC 3 cut(s) 486, 576, 582
NlaIII CATG 4 cut(s) 431, 445, 495, 754
NlaIV GGNNCC 7 cut(s) 112, 176, 192, 211, 212, 761, 801
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 3 cut(s) 320, 787, 830
OliI CACNNNNGTG 1 cut(s) 386
PcsI WCGNNNNNNNCGW 2 cut(s) 630, 771
PfeI GAWTC 2 cut(s) 105, 424
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 7 cut(s) 19, 22, 25, 28, 126, 691, 784
PleI GAGTC 2 cut(s) 328, 481
PpsI GAGTC 2 cut(s) 328, 481
Ppu21I YACGTR 1 cut(s) 514
PpuMI RGGWCCY 1 cut(s) 210
Psp124BI GAGCTC 2 cut(s) 522, 633
Psp5II RGGWCCY 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 7 cut(s) 112, 176, 192, 211, 212, 761, 801
PspOMI GGGCCC 1 cut(s) 799
PspPI GGNCC 8 cut(s) 94, 111, 210, 292, 438, 682, 799, 800
PspPPI RGGWCCY 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 5 cut(s) 71, 176, 275, 512, 653
RsaNI GTAC 5 cut(s) 70, 175, 274, 511, 652
RseI CAYNNNNRTG 2 cut(s) 386, 828
SacI GAGCTC 2 cut(s) 522, 633
SacII CCGCGG 2 cut(s) 261, 351
SalI GTCGAC 1 cut(s) 361
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 7 cut(s) 18, 21, 24, 27, 125, 690, 783
Sau3AI GATC 3 cut(s) 486, 576, 582
Sau96I GGNCC 8 cut(s) 94, 111, 210, 292, 438, 682, 799, 800
SchI GAGTC 2 cut(s) 328, 482
ScrFI CCNGG 7 cut(s) 179, 180, 215, 484, 638, 656, 657
SduI GDGCHC 4 cut(s) 463, 522, 633, 803
Sfr303I CCGCGG 2 cut(s) 261, 351
SgrBI CCGCGG 2 cut(s) 261, 351
SinI GGWCC 3 cut(s) 111, 210, 292
SmaI CCCGGG 2 cut(s) 180, 657
SmiMI CAYNNNNRTG 2 cut(s) 386, 828
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 2 cut(s) 522, 633
StyD4I CCNGG 7 cut(s) 177, 178, 213, 482, 636, 654, 655
StyI CCWWGG 2 cut(s) 678, 750
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 2 cut(s) 357, 516
TauI GCSGC 5 cut(s) 26, 29, 127, 692, 785
TfiI GAWTC 2 cut(s) 105, 424
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 3 cut(s) 320, 787, 830
TseI GCWGC 2 cut(s) 17, 20
Tsp45I GTSAC 3 cut(s) 320, 787, 830
TspDTI ATGAA 3 cut(s) 31, 416, 522
TspGWI ACGGA 1 cut(s) 398
TspMI CCCGGG 2 cut(s) 178, 655
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 3 cut(s) 111, 210, 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmaI CCCGGG 2 cut(s) 178, 655
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 1 cut(s) 593
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.