Rorug03G0062900

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012889
Physical Location & Seq
Forward (+)
4681413 .. 4686190
4778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0062900.1

Sequence Viewer

Length: 3591 bp
ATGAGCAACGATTTCGAATCGGATGCGAAGTTGGAATCCGGTGACGACGTTAAGGAAGCTAAACCTAAGGACGGCGGCGTTGGTAGCCCCGAGGATGAGGCTAGGGTTTCGCCAATGGAGCTCGATTTAGAGACCGAGGGCGGCGGTTCTATGGGCTCCGAGGGCGGGAGATCTGATAGGGTTGGGGTTAGCTCGGAGAGTGGCGATGGAAATGTAGATAAGGGAATGGAATCGAAAGGGTTTAAAATTCAGGGCGGCGACGATGATATTGATGATGTGTTTGATATTGCGAGAGTTGAAATTGATGATCAGGATGAGGATAGCTCTGAGGCTCAGAATGAGAGTGTGGATTTGTTATCCGAGTTTGATGAGTATGTGGCTAATGAGAAGGACGGAATGGCTTTGGGAACCTCCAGAGCTCTGAGCTATGGTTTCGAAGTCGGTGATATGGTGTGGGGGAAGGTCAAGTCTCATCCGTGGTGGCCGGGGCATATATTTAACGAGGCCTTTGCGACGTCTCAGGTGCGCCGGACACGAAGGGAAGGTCATGTCCTGGTGGCTTTCTTTGGTGATAGTAGTTATGGCTGGTTCGACCCGGCTGAGCTTATCCCATTCGAGCCTCATTTTGCTGAGAAGTCTCGGACGACGAATTACAGGAATTTTAACAGGGCTGTAGAGGAGGCTGTTGATGAGGTGAGTCGAAGGTGTGGAGTTGGTTTTGTGTGTAAATGTAGGAATCCGTATAATTTTCGGACCACTAGTGTGCCGGGGTACTTTGTTGTTGATGTGCCGGATTATGAGCATGGAGCAGTGTACTCTACGGATCAGATTAGGAAGGCGAGGGATGGTTTTAATCCTGCTGAGATGGTGGCTCTCGTAAAGCAGTTGGCAAGCTCACCAGTCCAAGGTGATCAGAAGAGCCTTAGCTTTATTAAGAATAAGGCTACTCTATTTGCGTATCGGAAGGCTGTGTTTGAAGAGTATGATGAGACCTATGCTCAGGCATTTGGGGCTCGGTCGTCTTCGCGTAATGCAGTTGCAGTGTCAGATCAGCCTGTTAAGCCTCGAGCACCTTTGAGTGGTCCTTTGGTGATTGCTGAAGCTCTGGGTGGGCGGAAGAGTGCCACAAAACCTATGAAAGTCAAGGACCATTCAAAGAAAGACAAATACCTTTTCAAGCGGAGAGATGAAACCAGCAATGTGAAATCCCACCAAAGTACACAGGGCCAAGCTAGTTCCTCAGCCCCATCCGCTTACTTGGAGGGATCAATAGCATTAGGAGATGGAGATTTTATGTTACAAAAGAGGGCTCCATCTCCCTCTATGAAGCCGCAGATTTTAAAACATGAGCAGACTGAGTTTATGAGCAGGGATGCATCCGGCAAAGAAACTGTAAACTTAAATCAGGTACCAGCAAACAGCTCTCTTGCCAGCCAAGTTGTTATCACTGGTGCAAAGCAATCTCTAAAGCTTTCTCTGGACAAGGAAAGTGGAGCCCTGCGGGAGGTGAAAGAGGTATTGACACAGAATGTAGCTGTAGGTCCTGCAAGCACCGGCTGCTCTGATTTATTGGGTGAAGGGACCAAGCAATGTATAAAAGATGAAACATCAGAGTCTTTGAAGCAGGAAGGGGAGGGTCCGATGGAGGTTAAAAATGAAGAGAGTGCTAAATTGTCTGGTTCATATGACAATTTACAACCACCTTTGAGTTTTCCAAAGAAAGTGGAGGAAGACAATGAATTAAATGAAGTTCATGTTGGTCGTCACAGTGTTGGAGATCCTTCACCAATTGAGGCAAAGAGTTCAGCTGGAAAGAAGGCTGTTGGTGGAGTGAAAAAGGCAAAGGTTCTTAAACGGCCACTGGGTGACATGAACCCTGAGAACTCTATTATGGGAGATAAAAAGAAAAAGAAGAAGAAGAAACAGTTGGGTTCAGAAACAAGCTTCAGAGATCCACAGAGGACTTTGACTTCTGGAAAAGTGAGTTCCTTGGTGGGTAAGGTAGCTGGAAAGCCCAACCATGCAGGATTGGCTCCAGAAGAAGAGTTTCAGGTAGAACATCATAAGAAAGATGTTGCTGTCAATAATGAATTGTCTGGATCTGTTGGAACATTGCCGATTCTTAAAGAGCTTGAATTACCACAACTAGTAAGCGATTTGCAAGCCCTTGCACTTGATCCTTTTCATGGTCGTGAAACAAACAACCCTGCAATTGTTCGGCAGTTCTTTCTGCAATTCCGGGCCCTTGTCTATCAGAAAAGCTTGGTTCTATCACCGCCATCAGAAACAGAGCTTGTTGAAGGTCGCAGCTCTAAAACTCCATCTGGTCTCAAAGCCTCAGAAATTTCTCCTCGGGAACCAGTTAGAGATGTTCCCTCCTCGAAGGCAGGAAAGCCCTTGTTCAGATCCGATGACCGCACCATAGCTGGGCGGAAACGTGCTCCATCTGATCGTCAAGGAGAGATTGCAGCTAAGAAGTCCAAGAAAATGAGTGATTTAAAATCATTGGCTGCAGAAAGGAAGATTGGTCTAAAAAGTTCAGAGACCCAGCGTGGAGAGGTAAAAGAAACAGCTGTGCCCATATCGCGGAAGTCACCGAAGCCAGGTCTTGTGAAGAAAATGGAACCTCCATCTAAGGTTGTTGAGCCCACCATGCTCGTGATGAAATTCCCTCCCAAAATCTCTCTGCCTTCACCTGCAGAACTGAAGGCAAAATTTGCTCGTTTTGGACCAATGGATCAGTCTGGTCTCCGTGTGTTCTACAAGTCCTCGACATGCAGAGTTGTATTTCTGTACAAATCTGATGCACAAGCAGCATATAAGGTTGCTACTTCAAACAACTCCTTTTTTGGCAACGTTAGTGTGAGGTTCCAGCTTCGAGAGGTGGACGGTCCTGAAGTTCCTGCATCTGGGAAGGGCAATGGAGATGACAATTCTACTGAGACCCCGCGGGCTAAGGATTCTGCATTCATGCCATCTCCGGCACTCAAACAGCGGCAGCAGCTGCAGTCTCTCTCACACAGTGCAATCCAGCCGAAGTCGATTCTGAAGAAGTCATCGGGTGATGAGCCACGAGGACAGGTAACTGGTGGCAATGGAAATAGTAAAGGAACTGCACGTGTAAAATTCATGTTGGGTGGGGAAGAACCTAGTAGAAATGAGCAATTGATGATGCCTGGTAATAGAAATAACAACTTCAACAACAACAGTGCTAGTTTTGCAGATGATGGTGCACCTTCTTCTTCTACTTCTGTTGCTATGATGAATTATAATGCTAGAAACTTTCAAAAGGTTACTCCTCCACCCTCATCATTGCCTCCTATACTTCCTCTTCCTCATAGTCGGCCTCCACCTTCTCAATATGCAAAACCCCCACCACCACATAGTAATTTTTCACAGCAGCATACGGAAATGACGCCACCTCCACCACCAAGCAGAAGCAGTCACAATATTCTCAACACACCCTCCACATTTCCGAGTGCACCCACAGTTGATATTTCCCAGCAGATGCTAAGCCTGTTGACAAGGTGCAATGATGTTGTGACCAACGTACAGGGCTTGCTTGGATATGTGCCCTACCATCCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

1196

Amino Acids

130.04

Weight (kDa)

8.63

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 148 - 231 2.3e-18 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08940 AT5G01530
fragaria_vesca FvH4_6g11540
malus_domestica MD04G1151300.v1.1 MD12G1165400.v1.1
prunus_persica Prupe.6G276200_v2.0.a1
pyrus_communis pycom04g13720 pycom12g15800
rosa_chinensis RchiOBHm_Chr3g0463241
rosa_laevigata RLG00000024798
rosa_multiflora Rmu_sc0008079.1_g000020
rosa_roxburghii Rroxscaffold_6G00416760
rosa_rugosa Rorug03G0062900
rosa_samantha Rh3AG120900 Rh3BG125400 Rh3CG127400 Rh3DG126600
rosa_wichuraiana Rw3G010270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3270
AarI CACCTGC 1 cut(s) 2704
AatII GACGTC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 2704
Acc65I GGTACC 1 cut(s) 1408
AccB1I GGYRCC 1 cut(s) 1408
AccII CGCG 3 cut(s) 1027, 2587, 2950
AclI AACGTT 1 cut(s) 2856
AclWI GGATC 8 cut(s) 831, 1273, 1772, 1946, 2107, 2171, 2400, 2745
AcoI YGGCCR 2 cut(s) 482, 1856
AcsI RAATTY 6 cut(s) 246, 658, 2343, 2666, 2714, 3125
AcuI CTGAAG 5 cut(s) 1119, 1930, 2726, 2916, 3068
AcvI CACGTG 1 cut(s) 3119
AcyI GRCGYC 2 cut(s) 515, 3416
AdeI CACNNNGTG 2 cut(s) 1865, 3023
AfaI GTAC 6 cut(s) 773, 815, 1219, 1410, 2795, 3552
AflIII ACRYGT 1 cut(s) 3118
AhlI ACTAGT 2 cut(s) 758, 2146
AjnI CCWGG 3 cut(s) 552, 2602, 3175
AjuI GAANNNNNNNTTGG 6 cut(s) 1740, 1772, 1910, 1942, 2508, 2540
AleI CACNNNNGTG 1 cut(s) 761
Alw21I GWGCWC 6 cut(s) 123, 421, 1072, 2443, 3235, 3484
Alw44I GTGCAC 2 cut(s) 3231, 3480
AlwI GGATC 8 cut(s) 831, 1273, 1772, 1946, 2107, 2171, 2400, 2745
AlwNI CAGNNNCTG 1 cut(s) 3004
Ama87I CYCGRG 3 cut(s) 89, 1065, 2352
AoxI GGCC 6 cut(s) 482, 504, 1225, 1856, 2241, 3344
ApaI GGGCCC 1 cut(s) 2245
ApaLI GTGCAC 2 cut(s) 3231, 3480
ApeKI GCWGC 9 cut(s) 1557, 2307, 2468, 2510, 2813, 2998, 3001, 3004, 3400
ApoI RAATTY 6 cut(s) 246, 658, 2343, 2666, 2714, 3125
ArsI GACNNNNNNTTYG 2 cut(s) 529, 561
Asp700I GAANNNNTTC 1 cut(s) 2046
Asp718I GGTACC 1 cut(s) 1408
AspLEI GCGC 1 cut(s) 528
AsuC2I CCSGG 4 cut(s) 486, 596, 768, 2240
AsuII TTCGAA 2 cut(s) 15, 435
AvaI CYCGRG 3 cut(s) 89, 1065, 2352
AvaII GGWCC 8 cut(s) 753, 1082, 1147, 1541, 1581, 1637, 2729, 2891
AxyI CCTNAGG 1 cut(s) 66
BaeGI GKGCMC 5 cut(s) 2245, 2580, 3235, 3484, 3576
BanI GGYRCC 1 cut(s) 1408
BanII GRGCYC 8 cut(s) 123, 158, 421, 1015, 1312, 1498, 2245, 2649
BauI CACGAG 2 cut(s) 2657, 3072
BbrPI CACGTG 1 cut(s) 3119
BbsI GAAGAC 2 cut(s) 1014, 1737
Bbv12I GWGCWC 6 cut(s) 123, 421, 1072, 2443, 3235, 3484
BbvCI CCTCAGC 1 cut(s) 1240
BbvI GCAGC 9 cut(s) 1544, 2319, 2480, 2497, 2825, 2991, 3010, 3013, 3412
BceAI ACGGC 2 cut(s) 88, 1871
BcgI CGANNNNNNTGC 5 cut(s) 5, 29, 39, 491, 525
BciT130I CCWGG 3 cut(s) 554, 2604, 3177
BclI TGATCA 2 cut(s) 307, 910
BcnI CCSGG 4 cut(s) 486, 596, 768, 2240
BcuI ACTAGT 2 cut(s) 758, 2146
BfaI CTAG 7 cut(s) 102, 759, 1233, 2147, 3150, 3213, 3276
BfmI CTRYAG 5 cut(s) 672, 1536, 2511, 2697, 3005
BfuAI ACCTGC 1 cut(s) 2704
BglII AGATCT 1 cut(s) 170
BlpI GCTNAGC 2 cut(s) 600, 3512
Bme1390I CCNGG 7 cut(s) 486, 554, 596, 768, 2240, 2604, 3177
Bme18I GGWCC 8 cut(s) 753, 1082, 1147, 1541, 1581, 1637, 2729, 2891
BmeT110I CYCGRG 3 cut(s) 89, 1065, 2352
BmrFI CCNGG 7 cut(s) 486, 554, 596, 768, 2240, 2604, 3177
BmrI ACTGGG 1 cut(s) 1871
BmsI GCATC 7 cut(s) 13, 1363, 1385, 2794, 2915, 3162, 3498
BmuI ACTGGG 1 cut(s) 1871
BpiI GAAGAC 2 cut(s) 1014, 1737
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 2 cut(s) 397, 2019
Bpu10I CCTNAGC 4 cut(s) 923, 999, 1240, 2955
Bpu1102I GCTNAGC 2 cut(s) 600, 3512
Bpu14I TTCGAA 2 cut(s) 15, 435
BpuMI CCSGG 4 cut(s) 486, 596, 768, 2240
BsaAI YACGTR 1 cut(s) 3119
BsaHI GRCGYC 2 cut(s) 515, 3416
BsaI GGTCTC 6 cut(s) 125, 983, 2333, 2537, 2753, 2936
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 4 cut(s) 3406, 3436, 3449, 3479
Bse118I RCCGGY 1 cut(s) 1553
Bse1I ACTGG 5 cut(s) 899, 1453, 1866, 2360, 3091
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 7 cut(s) 1204, 1595, 2111, 2926, 3100, 3311, 3538
BseBI CCWGG 3 cut(s) 554, 2604, 3177
BseGI GGATG 9 cut(s) 28, 100, 319, 472, 850, 1247, 1376, 1378, 3580
BseMI GCAATG 7 cut(s) 1204, 1595, 2111, 2926, 3100, 3311, 3538
BseNI ACTGG 5 cut(s) 899, 1453, 1866, 2360, 3091
BseRI GAGGAG 4 cut(s) 692, 2340, 2368, 3288
BseSI GKGCMC 5 cut(s) 2245, 2580, 3235, 3484, 3576
BseXI GCAGC 9 cut(s) 1544, 2319, 2480, 2497, 2825, 2991, 3010, 3013, 3412
BseYI CCCAGC 3 cut(s) 2426, 2547, 3501
BsgI GTGCAG 1 cut(s) 3099
Bsh1236I CGCG 3 cut(s) 1027, 2587, 2950
Bsh1285I CGRYCG 1 cut(s) 1019
BshFI GGCC 6 cut(s) 484, 506, 1227, 1858, 2243, 3346
BshNI GGYRCC 1 cut(s) 1408
BsiEI CGRYCG 1 cut(s) 1019
BsiHKAI GWGCWC 6 cut(s) 123, 421, 1072, 2443, 3235, 3484
BsiHKCI CYCGRG 3 cut(s) 89, 1065, 2352
BslFI GGGAC 1 cut(s) 1594
BsmBI CGTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 1594
BsmI GAATGC 1 cut(s) 2966
BsnI GGCC 6 cut(s) 484, 506, 1227, 1858, 2243, 3346
Bso31I GGTCTC 6 cut(s) 125, 983, 2333, 2537, 2753, 2936
BsoBI CYCGRG 3 cut(s) 89, 1065, 2352
Bsp119I TTCGAA 2 cut(s) 15, 435
Bsp120I GGGCCC 1 cut(s) 2241
Bsp1407I TGTACA 1 cut(s) 2793
Bsp1720I GCTNAGC 2 cut(s) 600, 3512
BspANI GGCC 6 cut(s) 484, 506, 1227, 1858, 2243, 3346
BspFNI CGCG 3 cut(s) 1027, 2587, 2950
BspMAI CTGCAG 3 cut(s) 2515, 2701, 3009
BspMI ACCTGC 1 cut(s) 2704
BspPI GGATC 8 cut(s) 831, 1273, 1772, 1946, 2107, 2171, 2400, 2745
BspQI GCTCTTC 1 cut(s) 911
BspT104I TTCGAA 2 cut(s) 15, 435
BspT107I GGYRCC 1 cut(s) 1408
BspTNI GGTCTC 6 cut(s) 125, 983, 2333, 2537, 2753, 2936
BsrDI GCAATG 7 cut(s) 1204, 1595, 2111, 2926, 3100, 3311, 3538
BsrFI RCCGGY 1 cut(s) 1553
BsrGI TGTACA 1 cut(s) 2793
BsrI ACTGG 5 cut(s) 899, 1453, 1866, 2360, 3091
BssAI RCCGGY 1 cut(s) 1553
BssNI GRCGYC 2 cut(s) 515, 3416
BssSI CACGAG 2 cut(s) 2657, 3072
BssT1I CCWWGG 2 cut(s) 904, 1989
Bst2BI CACGAG 2 cut(s) 2657, 3072
Bst2UI CCWGG 3 cut(s) 554, 2604, 3177
Bst4CI ACNGT 7 cut(s) 1393, 1769, 1926, 2891, 3023, 3209, 3490
Bst6I CTCTTC 6 cut(s) 911, 972, 1112, 1653, 2037, 3336
BstACI GRCGYC 2 cut(s) 515, 3416
BstAPI GCANNNNNTGC 3 cut(s) 1557, 2717, 3004
BstAUI TGTACA 1 cut(s) 2793
BstBAI YACGTR 1 cut(s) 3119
BstBI TTCGAA 2 cut(s) 15, 435
BstC8I GCNNGC 6 cut(s) 892, 1432, 1549, 2163, 2952, 3560
BstDSI CCRYGG 2 cut(s) 476, 2948
BstENI CCTNNNNNAGG 1 cut(s) 1502
BstF5I GGATG 9 cut(s) 28, 100, 319, 472, 850, 1247, 1376, 1378, 3580
BstFNI CGCG 3 cut(s) 1027, 2587, 2950
BstHHI GCGC 1 cut(s) 528
BstMCI CGRYCG 1 cut(s) 1019
BstNI CCWGG 3 cut(s) 554, 2604, 3177
BstNSI RCATGY 1 cut(s) 2778
BstSCI CCNGG 7 cut(s) 484, 552, 594, 766, 2238, 2602, 3175
BstSFI CTRYAG 5 cut(s) 672, 1536, 2511, 2697, 3005
BstSLI GKGCMC 5 cut(s) 2245, 2580, 3235, 3484, 3576
BstUI CGCG 3 cut(s) 1027, 2587, 2950
BstV1I GCAGC 9 cut(s) 1544, 2319, 2480, 2497, 2825, 2991, 3010, 3013, 3412
BstV2I GAAGAC 2 cut(s) 1014, 1737
BstX2I RGATCY 5 cut(s) 170, 1777, 1951, 2099, 2405
BstYI RGATCY 5 cut(s) 170, 1777, 1951, 2099, 2405
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 6 cut(s) 484, 506, 1227, 1858, 2243, 3346
BtgI CCRYGG 2 cut(s) 476, 2948
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 9 cut(s) 28, 100, 319, 472, 850, 1247, 1376, 1378, 3580
BtsI GCAGTG 2 cut(s) 816, 1047
BtsIMutI CAGTG 7 cut(s) 816, 1047, 1446, 1774, 1859, 3028, 3214
BveI ACCTGC 1 cut(s) 2704
Cac8I GCNNGC 6 cut(s) 892, 1432, 1549, 2163, 2952, 3560
CaiI CAGNNNCTG 1 cut(s) 3004
CfoI GCGC 1 cut(s) 528
Cfr10I RCCGGY 1 cut(s) 1553
Cfr42I CCGCGG 1 cut(s) 2951
CseI GACGC 1 cut(s) 3424
Csp6I GTAC 6 cut(s) 772, 814, 1218, 1409, 2794, 3551
CspCI CAANNNNNGTGG 4 cut(s) 1471, 1506, 1704, 1739
CviQI GTAC 6 cut(s) 772, 814, 1218, 1409, 2794, 3551
DraI TTTAAA 3 cut(s) 244, 1341, 2499
DraIII CACNNNGTG 2 cut(s) 1865, 3023
EaeI YGGCCR 2 cut(s) 482, 1856
Eam1104I CTCTTC 6 cut(s) 911, 972, 1112, 1653, 2037, 3336
EarI CTCTTC 6 cut(s) 911, 972, 1112, 1653, 2037, 3336
EciI GGCGGA 2 cut(s) 1129, 2446
Ecl136II GAGCTC 2 cut(s) 121, 419
Eco130I CCWWGG 2 cut(s) 904, 1989
Eco147I AGGCCT 1 cut(s) 506
Eco24I GRGCYC 8 cut(s) 123, 158, 421, 1015, 1312, 1498, 2245, 2649
Eco31I GGTCTC 6 cut(s) 125, 983, 2333, 2537, 2753, 2936
Eco47I GGWCC 8 cut(s) 753, 1082, 1147, 1541, 1581, 1637, 2729, 2891
Eco53kI GAGCTC 2 cut(s) 121, 419
Eco57I CTGAAG 5 cut(s) 1119, 1930, 2726, 2916, 3068
Eco72I CACGTG 1 cut(s) 3119
Eco81I CCTNAGG 1 cut(s) 66
Eco88I CYCGRG 3 cut(s) 89, 1065, 2352
EcoICRI GAGCTC 2 cut(s) 121, 419
EcoNI CCTNNNNNAGG 1 cut(s) 1502
EcoO109I RGGNCCY 2 cut(s) 1541, 2242
EcoRII CCWGG 3 cut(s) 552, 2602, 3175
EcoT14I CCWWGG 2 cut(s) 904, 1989
EcoT22I ATGCAT 1 cut(s) 1378
EcoT38I GRGCYC 8 cut(s) 123, 158, 421, 1015, 1312, 1498, 2245, 2649
ErhI CCWWGG 2 cut(s) 904, 1989
Esp3I CGTCTC 1 cut(s) 522
FaqI GGGAC 1 cut(s) 1594
FauI CCCGC 4 cut(s) 158, 1494, 2943, 2955
FauNDI CATATG 1 cut(s) 1684
FbaI TGATCA 2 cut(s) 307, 910
FokI GGATG 9 cut(s) 35, 107, 326, 459, 857, 1234, 1363, 1385, 3567
FriOI GRGCYC 8 cut(s) 123, 158, 421, 1015, 1312, 1498, 2245, 2649
FspBI CTAG 7 cut(s) 102, 759, 1233, 2147, 3150, 3213, 3276
GlaI GCGC 1 cut(s) 527
GsaI CCCAGC 3 cut(s) 2430, 2551, 3505
GsuI CTGGAG 2 cut(s) 397, 2019
HaeIII GGCC 6 cut(s) 484, 506, 1227, 1858, 2243, 3346
HgaI GACGC 1 cut(s) 3424
HhaI GCGC 1 cut(s) 528
Hin1I GRCGYC 2 cut(s) 515, 3416
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 1 cut(s) 3522
HindII GTYRAC 1 cut(s) 3522
HindIII AAGCTT 3 cut(s) 1469, 1942, 2260
HinfI GANTC 9 cut(s) 17, 35, 230, 697, 736, 1613, 2119, 2960, 3043
Hpy166II GTNNAC 7 cut(s) 814, 1220, 1396, 2887, 3233, 3482, 3522
Hpy8I GTNNAC 7 cut(s) 814, 1220, 1396, 2887, 3233, 3482, 3522
Hpy99I CGWCG 4 cut(s) 50, 263, 517, 649
HpyCH4III ACNGT 7 cut(s) 1393, 1769, 1926, 2891, 3023, 3209, 3490
HpyCH4IV ACGT 6 cut(s) 48, 515, 2437, 2856, 3118, 3549
HpySE526I ACGT 6 cut(s) 48, 515, 2437, 2856, 3118, 3549
Hsp92I GRCGYC 2 cut(s) 515, 3416
HspAI GCGC 1 cut(s) 526
KpnI GGTACC 1 cut(s) 1412
Ksp22I TGATCA 2 cut(s) 307, 910
KspI CCGCGG 1 cut(s) 2951
LguI GCTCTTC 1 cut(s) 911
LmnI GCTCC 7 cut(s) 118, 161, 806, 1315, 1493, 2038, 2446
Lsp1109I GCAGC 9 cut(s) 1544, 2319, 2480, 2497, 2825, 2991, 3010, 3013, 3412
LweI GCATC 7 cut(s) 13, 1363, 1385, 2794, 2915, 3162, 3498
MaeI CTAG 7 cut(s) 102, 759, 1233, 2147, 3150, 3213, 3276
MaeII ACGT 6 cut(s) 48, 515, 2437, 2856, 3118, 3549
MaeIII GTNAC 9 cut(s) 41, 1296, 1763, 1865, 2592, 3082, 3292, 3443, 3541
MfeI CAATTG 3 cut(s) 1788, 2211, 3164
MflI RGATCY 5 cut(s) 170, 1777, 1951, 2099, 2405
MlyI GAGTC 2 cut(s) 706, 1622
MmeI TCCRAC 3 cut(s) 12, 1753, 2086
Mph1103I ATGCAT 1 cut(s) 1378
MroXI GAANNNNTTC 1 cut(s) 2046
MslI CAYNNNNRTG 3 cut(s) 761, 2190, 2657
MspA1I CMGCKG 5 cut(s) 1808, 2573, 2950, 2995, 3004
MspR9I CCNGG 7 cut(s) 486, 554, 596, 768, 2240, 2604, 3177
MunI CAATTG 3 cut(s) 1788, 2211, 3164
Mva1269I GAATGC 1 cut(s) 2966
MvaI CCWGG 3 cut(s) 554, 2604, 3177
MvnI CGCG 3 cut(s) 1027, 2587, 2950
NciI CCSGG 4 cut(s) 486, 596, 768, 2240
NdeI CATATG 1 cut(s) 1684
NmuCI GTSAC 6 cut(s) 41, 1763, 1865, 2592, 3443, 3541
NsiI ATGCAT 1 cut(s) 1378
NspI RCATGY 1 cut(s) 2778
NspV TTCGAA 2 cut(s) 15, 435
OliI CACNNNNGTG 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 1065
PaqCI CACCTGC 1 cut(s) 2704
PceI AGGCCT 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 911
PctI GAATGC 1 cut(s) 2966
PdmI GAANNNNTTC 1 cut(s) 2046
PfeI GAWTC 7 cut(s) 17, 35, 230, 736, 2119, 2960, 3043
PleI GAGTC 2 cut(s) 705, 1621
PmaCI CACGTG 1 cut(s) 3119
PmlI CACGTG 1 cut(s) 3119
PpsI GAGTC 2 cut(s) 705, 1621
Ppu21I YACGTR 1 cut(s) 3119
PpuMI RGGWCCY 1 cut(s) 1541
PsiI TTATAA 1 cut(s) 3270
Psp124BI GAGCTC 2 cut(s) 123, 421
Psp1406I AACGTT 1 cut(s) 2856
Psp5II RGGWCCY 1 cut(s) 1541
Psp6I CCWGG 3 cut(s) 552, 2602, 3175
PspCI CACGTG 1 cut(s) 3119
PspFI CCCAGC 3 cut(s) 2426, 2547, 3501
PspGI CCWGG 3 cut(s) 552, 2602, 3175
PspOMI GGGCCC 1 cut(s) 2241
PspPPI RGGWCCY 1 cut(s) 1541
PspXI VCTCGAGB 1 cut(s) 1065
PstI CTGCAG 3 cut(s) 2515, 2701, 3009
PstNI CAGNNNCTG 1 cut(s) 3004
PsuI RGATCY 5 cut(s) 170, 1777, 1951, 2099, 2405
PvuII CAGCTG 3 cut(s) 1808, 2573, 3004
RsaI GTAC 6 cut(s) 773, 815, 1219, 1410, 2795, 3552
RsaNI GTAC 6 cut(s) 772, 814, 1218, 1409, 2794, 3551
RseI CAYNNNNRTG 3 cut(s) 761, 2190, 2657
SacI GAGCTC 2 cut(s) 123, 421
SacII CCGCGG 1 cut(s) 2951
SapI GCTCTTC 1 cut(s) 911
SchI GAGTC 2 cut(s) 706, 1622
ScrFI CCNGG 7 cut(s) 486, 554, 596, 768, 2240, 2604, 3177
SfaNI GCATC 7 cut(s) 13, 1363, 1385, 2794, 2915, 3162, 3498
SfcI CTRYAG 5 cut(s) 672, 1536, 2511, 2697, 3005
Sfr274I CTCGAG 1 cut(s) 1065
Sfr303I CCGCGG 1 cut(s) 2951
SfuI TTCGAA 2 cut(s) 15, 435
SgrBI CCGCGG 1 cut(s) 2951
SinI GGWCC 8 cut(s) 753, 1082, 1147, 1541, 1581, 1637, 2729, 2891
SlaI CTCGAG 1 cut(s) 1065
SmiMI CAYNNNNRTG 3 cut(s) 761, 2190, 2657
SmlI CTYRAG 1 cut(s) 1065
SmoI CTYRAG 1 cut(s) 1065
SpeI ACTAGT 2 cut(s) 758, 2146
SseBI AGGCCT 1 cut(s) 506
SspI AATATT 1 cut(s) 3451
SspMI CTAG 7 cut(s) 102, 759, 1233, 2147, 3150, 3213, 3276
SstI GAGCTC 2 cut(s) 123, 421
StuI AGGCCT 1 cut(s) 506
StyD4I CCNGG 7 cut(s) 484, 552, 594, 766, 2238, 2602, 3175
StyI CCWWGG 2 cut(s) 904, 1989
TaaI ACNGT 7 cut(s) 1393, 1769, 1926, 2891, 3023, 3209, 3490
TaiI ACGT 6 cut(s) 51, 518, 2440, 2859, 3121, 3552
TaqII GACCGA 2 cut(s) 149, 1005
TatI WGTACW 3 cut(s) 813, 1217, 2793
TauI GCSGC 5 cut(s) 78, 144, 258, 1333, 2998
TfiI GAWTC 7 cut(s) 17, 35, 230, 736, 2119, 2960, 3043
TscAI CASTG 7 cut(s) 816, 1047, 1453, 1774, 1866, 3028, 3214
TseFI GTSAC 6 cut(s) 41, 1763, 1865, 2592, 3443, 3541
TseI GCWGC 9 cut(s) 1557, 2307, 2468, 2510, 2813, 2998, 3001, 3004, 3400
Tsp45I GTSAC 6 cut(s) 41, 1763, 1865, 2592, 3443, 3541
TspGWI ACGGA 6 cut(s) 408, 465, 729, 836, 2741, 3422
TspRI CASTG 7 cut(s) 816, 1047, 1453, 1774, 1866, 3028, 3214
VneI GTGCAC 2 cut(s) 3231, 3480
VpaK11BI GGWCC 8 cut(s) 753, 1082, 1147, 1541, 1581, 1637, 2729, 2891
XagI CCTNNNNNAGG 1 cut(s) 1502
XapI RAATTY 6 cut(s) 246, 658, 2343, 2666, 2714, 3125
XceI RCATGY 1 cut(s) 2778
XhoI CTCGAG 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 2046
XspI CTAG 7 cut(s) 102, 759, 1233, 2147, 3150, 3213, 3276
ZraI GACGTC 1 cut(s) 516
Zsp2I ATGCAT 1 cut(s) 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.