AT5G01790

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015818
Physical Location & Seq
Reverse (-)
304677 .. 305912
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01790.1

Sequence Viewer

Length: 627 bp
ATGCACACATCTCTCCCTCTCTTTCCTTCCCTCTCTCTCTCTCACTCTCCCAAGACAATAATGCCAAACGCGGGATCTGAGCGGGCAGCTTCACTCTCACTGAAAAAGCAAGACACCGCCACCTTCTCCGGTAAGCTACCGTCGACCAAACAACGTTTTTCGTCGGTATCAGCTGCTTGTCCTTCCTTTAGAATCTACTACTACGACGGAGCCGCCGGTGCCGTCCCTTTCGAATGGGAATCTCATCCAGGCACACCCAAACACCCCTCCTCTGAGCTACCTACTCTGCCACCTCTCACTCCTCCGCCGTCTCATTTCTCTTTCTCCGGCGACCAAATCCGCCGCCGTTCCAAAAAGTCCACCAAGAAAATCCTCGCACTAATCCCGACAAGGCTCTTCTGGCTATCGGGCGATCACAATGGTAAGGCTAAGAAACTGTCGGCTTCATCACCACCATCTCTGTCGGAGAGAGTGTTGATCGACGAAAATGAGTACGATCTGTTCAAGTTTCAAACAGAAAGGAATGTCATGCGAAGATTTTCATCCTTCGACTCTTCTGCTGACTACCCAATTCAGAGATCACAATCCACTTCCTGCTTCGGAATCCGCAGATGTTTCCTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

9.81

Isoelectric Point (pI)

70.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01790
fragaria_vesca FvH4_6g10240
prunus_persica Prupe.1G085100_v2.0.a1 Prupe.6G289800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460991
rosa_laevigata RLG00000024961
rosa_multiflora Rmu_sc0006670.1_g000005 Rmu_sc0007017.1_g000005
rosa_roxburghii Rroxscaffold_6G00418970
rosa_rugosa Rorug03G0047600
rosa_samantha Rh3AG105000 Rh3BG108800 Rh3CG110300 Rh3DG110500
rosa_wichuraiana Rw3G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 143
AccII CGCG 1 cut(s) 71
AciI CCGC 8 cut(s) 71, 82, 117, 213, 305, 340, 343, 607
AclI AACGTT 1 cut(s) 154
AclWI GGATC 1 cut(s) 82
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 505, 512
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 4 cut(s) 89, 136, 173, 277
AluI AGCT 4 cut(s) 89, 136, 173, 277
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 86, 173
Asp700I GAANNNNTTC 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 441
AsuII TTCGAA 1 cut(s) 231
BanI GGYRCC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 98, 160
BccI CCATC 1 cut(s) 463
BceAI ACGGC 3 cut(s) 206, 292, 330
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 315
BisI GCNGC 4 cut(s) 87, 174, 213, 343
BlsI GCNGC 4 cut(s) 88, 175, 214, 344
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 211, 220
BmrFI CCNGG 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 231
BsaBI GATNNNNATC 2 cut(s) 541, 583
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 215
Bse8I GATNNNNATC 2 cut(s) 541, 583
BseBI CCWGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 244, 542
BseJI GATNNNNATC 2 cut(s) 541, 583
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 69, 264
BseRI GAGGAG 2 cut(s) 259, 291
BseXI GCAGC 2 cut(s) 98, 160
Bsh1236I CGCG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 218
BsiSI CCGG 3 cut(s) 129, 216, 327
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 315
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 231
Bsp143I GATC 5 cut(s) 74, 412, 477, 496, 578
BspACI CCGC 8 cut(s) 71, 82, 117, 213, 305, 340, 343, 607
BspCNI CTCAG 2 cut(s) 70, 265
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 211, 220
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssMI GATC 5 cut(s) 74, 412, 477, 496, 578
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 141, 438
Bst6I CTCTTC 2 cut(s) 401, 559
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 78, 273, 429
BstF5I GGATG 2 cut(s) 244, 542
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 5 cut(s) 77, 415, 480, 499, 581
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 5 cut(s) 74, 412, 477, 496, 578
BstMWI GCNNNNNNNGC 2 cut(s) 218, 400
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 98, 160
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsCI GGATG 2 cut(s) 244, 542
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 215
Csp6I GTAC 1 cut(s) 493
CviAII CATG 1 cut(s) 529
CviJI RGCY 9 cut(s) 89, 136, 173, 212, 277, 394, 403, 428, 443
CviKI_1 RGCY 9 cut(s) 89, 136, 173, 212, 277, 394, 403, 428, 443
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 3 cut(s) 78, 273, 429
DpnI GATC 5 cut(s) 76, 414, 479, 498, 580
DpnII GATC 5 cut(s) 74, 412, 477, 496, 578
Eam1104I CTCTTC 2 cut(s) 401, 559
EarI CTCTTC 2 cut(s) 401, 559
EciI GGCGGA 2 cut(s) 294, 329
EcoRII CCWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 1 cut(s) 532
FaiI YATR 1 cut(s) 530
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 528
FauI CCCGC 2 cut(s) 64, 75
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 87, 174, 213, 343
FokI GGATG 2 cut(s) 231, 529
Fsp4HI GCNGC 4 cut(s) 87, 174, 213, 343
GluI GCNGC 4 cut(s) 87, 174, 213, 343
HapII CCGG 3 cut(s) 129, 216, 327
Hin1II CATG 1 cut(s) 532
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 4 cut(s) 192, 239, 551, 603
HpaII CCGG 3 cut(s) 129, 216, 327
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 2 cut(s) 144, 360
Hpy188I TCNGA 5 cut(s) 79, 274, 466, 576, 602
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 2 cut(s) 144, 360
Hpy99I CGWCG 4 cut(s) 145, 166, 209, 485
HpyAV CCTTC 4 cut(s) 36, 133, 192, 556
HpyCH4III ACNGT 2 cut(s) 141, 438
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 400
HpyF3I CTNAG 3 cut(s) 78, 273, 429
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 1 cut(s) 532
Kzo9I GATC 5 cut(s) 74, 412, 477, 496, 578
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 7 cut(s) 142, 229, 234, 261, 340, 385, 607
Lsp1109I GCAGC 2 cut(s) 98, 160
MaeII ACGT 1 cut(s) 154
MalI GATC 5 cut(s) 76, 414, 479, 498, 580
MbiI CCGCTC 1 cut(s) 82
MboI GATC 5 cut(s) 74, 412, 477, 496, 578
MboII GAAGA 3 cut(s) 388, 546, 546
MflI RGATCY 1 cut(s) 74
MluCI AATT 1 cut(s) 570
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 7 cut(s) 27, 41, 277, 280, 303, 312, 383
MroXI GAANNNNTTC 1 cut(s) 538
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 129, 216, 327
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 218, 400
NdeII GATC 5 cut(s) 74, 412, 477, 496, 578
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 2 cut(s) 211, 220
NspV TTCGAA 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 3 cut(s) 192, 239, 603
PkrI GCNGC 4 cut(s) 88, 175, 214, 344
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
Psp1406I AACGTT 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 211, 220
PsrI GAACNNNNNNTAC 2 cut(s) 485, 517
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SalI GTCGAC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 401
SatI GCNGC 4 cut(s) 87, 174, 213, 343
Sau3AI GATC 5 cut(s) 74, 412, 477, 496, 578
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 1 cut(s) 249
SetI ASST 8 cut(s) 91, 125, 138, 157, 175, 279, 283, 295
SfuI TTCGAA 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 215
Sse9I AATT 1 cut(s) 570
SsiI CCGC 8 cut(s) 71, 82, 117, 213, 305, 340, 343, 607
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 141, 438
TaiI ACGT 1 cut(s) 157
TaqI TCGA 4 cut(s) 143, 231, 480, 549
TasI AATT 1 cut(s) 570
TauI GCSGC 2 cut(s) 215, 345
TfiI GAWTC 3 cut(s) 192, 239, 603
TscAI CASTG 1 cut(s) 105
TseI GCWGC 2 cut(s) 86, 173
TspDTI ATGAA 2 cut(s) 435, 531
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.