Rroxscaffold_6G00418970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015818
Physical Location & Seq
Reverse (-)
40531592 .. 40532161
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418970.1

Sequence Viewer

Length: 570 bp
ATGTTCAGCGCCAACCATCAGCTTACCCAGAAGTCTCTCCCAATGAAACAAGAGGATGACAAGTTCTTCTCTAGGGTTCTGTCCAAGGAAAGCTCCATGGCCAACCCATCTTTCAAGGTCTACTATGGAGGACTACCTGCTAATGTACCATTCATGTGGGAATCTCAACCTGGTACTCCTAAACACAAGTTCAGTGAAGAAACACTTCCTCCTCTTACTCCTCCACCTTCTTATTATTCCAACAATCCCAATAAAAAACCATTCAAGAAGAACTCAAGATCCAATCTTTTACGTGTTTTGTTCCTAAAGATAAGCCCCAAGAAAAACCGTCTCCCACAATCTCTATCATCCACATCTTCTTCCTCGTCTTCGTTGTTTTCCAAGTCAGATTTGTCAATGCGCGTGCCTATGAATACCTGTGGGAGCAGGTTTTCGAGCCCGAGTTCATCTTTTGATTTTAGCGGAGATTATGAAGAGGAGGGCGTAGTTGGCTCGCCTACTTCAACATTGTGCTTTGGATTTCGTAGGGTGACTAGTACTGGAGCCGACCGAAATTGTCACCGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

189

Amino Acids

21.13

Weight (kDa)

9.77

Isoelectric Point (pI)

65.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01790
fragaria_vesca FvH4_6g10240
prunus_persica Prupe.1G085100_v2.0.a1 Prupe.6G289800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460991
rosa_laevigata RLG00000024961
rosa_multiflora Rmu_sc0006670.1_g000005 Rmu_sc0007017.1_g000005
rosa_roxburghii Rroxscaffold_6G00418970
rosa_rugosa Rorug03G0047600
rosa_samantha Rh3AG105000 Rh3BG108800 Rh3CG110300 Rh3DG110500
rosa_wichuraiana Rw3G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 145, 417
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 402
AciI CCGC 1 cut(s) 462
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 3 cut(s) 147, 175, 538
AflIII ACRYGT 1 cut(s) 292
AgeI ACCGGT 1 cut(s) 561
AgsI TTSAA 3 cut(s) 115, 265, 504
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 4 cut(s) 47, 79, 263, 295
AluBI AGCT 2 cut(s) 22, 93
AluI AGCT 2 cut(s) 22, 93
Alw26I GTCTC 2 cut(s) 39, 335
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 1 cut(s) 99
AsiGI ACCGGT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 2 cut(s) 11, 402
AsuHPI GGTGA 2 cut(s) 541, 551
AvaI CYCGRG 1 cut(s) 439
BalI TGGCCA 1 cut(s) 101
BanII GRGCYC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 360
BccI CCATC 2 cut(s) 24, 115
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 39, 335
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 2 cut(s) 72, 534
BfoI RGCGCY 1 cut(s) 12
BfuAI ACCTGC 2 cut(s) 145, 417
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 84, 96
BsaWI WCCGGW 1 cut(s) 561
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bse118I RCCGGY 1 cut(s) 561
Bse1I ACTGG 1 cut(s) 544
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 84, 96
BseGI GGATG 2 cut(s) 61, 347
BseNI ACTGG 1 cut(s) 544
BseRI GAGGAG 3 cut(s) 201, 210, 491
Bsh1236I CGCG 1 cut(s) 402
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 561
BsiEI CGRYCG 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 1 cut(s) 562
BsmAI GTCTC 2 cut(s) 39, 335
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 1 cut(s) 278
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 101
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 544
BspMI ACCTGC 2 cut(s) 145, 417
BspPI GGATC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 561
BsrI ACTGG 1 cut(s) 544
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 84, 96
BssMI GATC 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 84, 96
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 404, 494
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 61, 347
BstFNI CGCG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 402
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 2 cut(s) 39, 335
BstMBI GATC 1 cut(s) 278
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 156
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 61, 347
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 2 cut(s) 145, 417
Cac8I GCNNGC 2 cut(s) 404, 494
CfoI GCGC 2 cut(s) 11, 402
Cfr10I RCCGGY 1 cut(s) 561
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 3 cut(s) 146, 174, 537
CspAI ACCGGT 1 cut(s) 561
CviAII CATG 2 cut(s) 97, 154
CviJI RGCY 7 cut(s) 22, 93, 101, 315, 438, 492, 545
CviKI_1 RGCY 7 cut(s) 22, 93, 101, 315, 438, 492, 545
CviQI GTAC 3 cut(s) 146, 174, 537
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 84, 96
Eco24I GRGCYC 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 84, 96
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 2 cut(s) 84, 96
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 2 cut(s) 100, 157
FaiI YATR 5 cut(s) 98, 126, 155, 410, 471
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 2 cut(s) 96, 153
FblI GTMKAC 1 cut(s) 120
FokI GGATG 2 cut(s) 68, 334
FriOI GRGCYC 1 cut(s) 440
FspBI CTAG 2 cut(s) 72, 534
GlaI GCGC 2 cut(s) 10, 401
GsuI CTGGAG 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 562
HhaI GCGC 2 cut(s) 11, 402
Hin1II CATG 2 cut(s) 100, 157
Hin6I GCGC 2 cut(s) 9, 400
HinP1I GCGC 2 cut(s) 9, 400
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 562
HphI GGTGA 2 cut(s) 541, 551
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 2 cut(s) 265, 276
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 2 cut(s) 100, 157
HspAI GCGC 2 cut(s) 9, 400
Kzo9I GATC 1 cut(s) 278
LmnI GCTCC 3 cut(s) 98, 423, 542
LpnPI CCDG 7 cut(s) 41, 150, 156, 183, 412, 430, 525
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 2 cut(s) 72, 534
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 529, 557
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 7 cut(s) 58, 209, 280, 348, 351, 360, 485
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 440
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 1 cut(s) 553
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 8 cut(s) 46, 122, 219, 222, 231, 373, 469, 472
Mox20I TGGCCA 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 154
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 1 cut(s) 489
NcoI CCATGG 1 cut(s) 96
NdeII GATC 1 cut(s) 278
NlaIII CATG 2 cut(s) 100, 157
NlaIV GGNNCC 1 cut(s) 544
NmuCI GTSAC 2 cut(s) 529, 557
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 161
PinAI ACCGGT 1 cut(s) 561
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 544
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 3 cut(s) 147, 175, 538
RsaNI GTAC 3 cut(s) 146, 174, 537
RseI CAYNNNNRTG 1 cut(s) 154
Sau3AI GATC 1 cut(s) 278
ScaI AGTACT 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 440
SetI ASST 9 cut(s) 24, 95, 120, 139, 172, 229, 295, 419, 431
SexAI ACCWGGT 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SpeI ACTAGT 1 cut(s) 533
Sse9I AATT 1 cut(s) 553
SsiI CCGC 1 cut(s) 462
SspMI CTAG 2 cut(s) 72, 534
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 2 cut(s) 84, 96
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 434
TaqII GACCGA 1 cut(s) 564
TasI AATT 1 cut(s) 553
TatI WGTACW 1 cut(s) 536
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 529, 557
Tsp45I GTSAC 2 cut(s) 529, 557
TspDTI ATGAA 5 cut(s) 59, 142, 425, 435, 486
TspRI CASTG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 72, 534
ZrmI AGTACT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.